CmaCh10G011150 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G011150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_219
Location	Cma_Chr10 : 7646905 .. 7647519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACAAACAGAGAAACTTCAAAGCAAAAAGGCTTCTTACATTGTAACAAAGCATTGTAATATCGATAAAAGAGAGTTATGGGTATCCATTTTGAACCCTATGAAACTTTACATTGGCAAATGGCAGGTAAAGTCATTTGGGTTTGTTTTATTTTACAAAGATTTTTCTTAGCTTTTAAATCTTTTATTTTTCTTGTTTTTGTTGTAGCTTCCGCTGTCGAACACGAACAAGTTGGTCGTAAAGGGCTTATTCGTCAAGAAGCAGCTATGCTATGAGATCTCGAGCAATGGGTGCAGAGTAAAAATTGAAATTGACTGGTCAAATATCATAGGAATAAGAGCGGCAATGAAAAAAAATGAACCCGGAGTTCTTGAAGTGGAGGTTGCTTCCTTTTTCTTTTCTTTTCAAATATGTTATAAACTATTTTAATTTGAATATTCGAATTTTGTAGCTATCAGAACCACCTAAATTTTATAAGGAACTCGGACAAAAAGACGTGGGCGCACATAGCCAATGGGTCGATGGATCAGATTTCACCCGAGGTCAAGCTTCGACATGCAGGTTTGAACGATCTATTTGATTTTGAATGGTTATAGACATGCTCGTTAA

mRNA sequence

ATGGCAGCACAAACAGAGAAACTTCAAAGCAAAAAGGCTTCTTACATTGTAACAAAGCATTGTAATATCGATAAAAGAGAGTTATGGGTATCCATTTTGAACCCTATGAAACTTTACATTGGCAAATGGCAGCTTCCGCTGTCGAACACGAACAAGTTGGTCGTAAAGGGCTTATTCGTCAAGAAGCAGCTATGCTATGAGATCTCGAGCAATGGGTGCAGAGTAAAAATTGAAATTGACTGGTCAAATATCATAGGAATAAGAGCGGCAATGAAAAAAAATGAACCCGGAGTTCTTGAAGTGGAGCTATCAGAACCACCTAAATTTTATAAGGAACTCGGACAAAAAGACGTGGGCGCACATAGCCAATGGGTCGATGGATCAGATTTCACCCGAGGTCAAGCTTCGACATGCAGACATGCTCGTTAA

Coding sequence (CDS)

ATGGCAGCACAAACAGAGAAACTTCAAAGCAAAAAGGCTTCTTACATTGTAACAAAGCATTGTAATATCGATAAAAGAGAGTTATGGGTATCCATTTTGAACCCTATGAAACTTTACATTGGCAAATGGCAGCTTCCGCTGTCGAACACGAACAAGTTGGTCGTAAAGGGCTTATTCGTCAAGAAGCAGCTATGCTATGAGATCTCGAGCAATGGGTGCAGAGTAAAAATTGAAATTGACTGGTCAAATATCATAGGAATAAGAGCGGCAATGAAAAAAAATGAACCCGGAGTTCTTGAAGTGGAGCTATCAGAACCACCTAAATTTTATAAGGAACTCGGACAAAAAGACGTGGGCGCACATAGCCAATGGGTCGATGGATCAGATTTCACCCGAGGTCAAGCTTCGACATGCAGACATGCTCGTTAA

Protein sequence

MAAQTEKLQSKKASYIVTKHCNIDKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCRHAR

Homology

[Close]

BLAST of CmaCh10G011150 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-26
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D   L  SIL  + L IG WQL   N   LV K  F K+QL +EI  NG + KIEI+WSN
Sbjct: 101 DGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSN 160

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQA 136
           IIGI+A +++++PG+LEVEL+ PPKFYKE+ + +   H+QW DGSDFT GQA
Sbjct: 161 IIGIQAFLEEDKPGILEVELNHPPKFYKEI-EPEPRKHTQWTDGSDFTEGQA 211

[Close]

BLAST of CmaCh10G011150 vs. TrEMBL
Match: A0A0A0LYW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561920 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.7e-23
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 25  KRELWVSILNPMKLYIGKWQLPLSNTNK-LVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 84
           K  L  SILNP+ L+IG W+   +     +VVK  FV+KQ+CYE+  NG R KIE+DWSN
Sbjct: 4   KELLMTSILNPLLLHIGTWKFEGNGMKDVMVVKLNFVRKQICYEVMWNGSRKKIEVDWSN 63

Query: 85  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKD----VGAHSQWVDGSDFTRGQASTCR 140
           I+GIRA++  N  G+LEVELS PP  Y+ L   +       H++WV G DFT+GQA  CR
Sbjct: 64  IVGIRASLNDNGFGILEVELSRPPNLYEILNNNNNVDSHRRHNKWVVGWDFTQGQAPLCR 123

[Close]

BLAST of CmaCh10G011150 vs. TrEMBL
Match: A0A059B3G7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03288 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-17
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D  +L V+ +    + IG WQ    +   LV K  F  + L +E+  NG + K+EI WS+
Sbjct: 139 DMEQLKVARVPATLIRIGSWQFASEHEGDLVAKFFFATEILAWEVLMNGIQYKMEIRWSD 198

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTC-RH 141
           I  IRA +++N+PG+LE+EL   P FY+E  Q+    HS W+   DFT GQA TC RH
Sbjct: 199 ISSIRATIEENKPGILEIELHWSPTFYRETNQQP-RDHSNWISADDFTGGQAPTCGRH 255

[Close]

BLAST of CmaCh10G011150 vs. TrEMBL
Match: B9I6Z7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01040g PE=4 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-16
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1


Query: 40  IGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPGVL 99
           IG W+    N   LV K  F KK+L +E+   G + KIEI W++IIGI A M++N+ G+L
Sbjct: 135 IGSWERKSRNEGDLVAKCYFAKKKLVWELLKGGLKNKIEIQWNDIIGINALMQENQLGIL 194

Query: 100 EVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCR 140
           ++EL++PP F++E   +    H+ W   SDFT GQAS CR
Sbjct: 195 QIELNQPPTFHEETDPQP-RKHTIWKPASDFTGGQASICR 233

[Close]

BLAST of CmaCh10G011150 vs. TrEMBL
Match: A0A0D2TPH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G306100 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-16
Identity = 46/123 (37.40%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 17  VTKHCNIDKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVK 76
           + +H N+ K +    +++   + IG W+    N + L+ K  F KK+L +EI  +G + K
Sbjct: 23  ILRHTNMSKLKAENFLMS--SITIGSWERQSKNESDLIAKCYFAKKKLVWEILESGLKSK 82

Query: 77  IEIDWSNIIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQAS 136
           IE+ WS+I   +A +++ EPG L++EL++PP FY E+  +    H+QW   SDFT GQA+
Sbjct: 83  IEVQWSDISAFKATVQEGEPGTLQIELNQPPLFYHEVDPQP-RKHTQWRMVSDFTGGQAT 142

Query: 137 TCR 140
           T R
Sbjct: 143 TNR 142

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BLAST of CmaCh10G011150 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-14
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 38  LYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPG 97
           L IG+W+        LV K  F K +L +E+   G + KIEI WS+I+ ++A + ++EPG
Sbjct: 119 LRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPEDEPG 178

Query: 98  VLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCR 140
            L + L+  P F++E   +    H+ W   SDFT GQAS  R
Sbjct: 179 TLTIVLARRPLFFRETNPQP-RKHTLWQATSDFTDGQASMNR 219

[Close]

BLAST of CmaCh10G011150 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-13
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1


Query: 38  LYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSNIIGIRAAMKKNEPG 97
           L IG+W+        LV K  F K +L +E+   G + KIEI WS+I+ ++A   ++ PG
Sbjct: 146 LKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANCPEDGPG 205

Query: 98  VLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCR 140
            L + L+  P F++E   +    H+ W   SDFT GQAS  R
Sbjct: 206 TLTLVLARQPLFFRETNPQP-RKHTLWQATSDFTDGQASMNR 246

[Close]

BLAST of CmaCh10G011150 vs. NCBI nr
Match: gi|659099334|ref|XP_008450547.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D   L  SIL  + L IG WQL   N   LV K  F K+QL +EI  NG + KIEI+WSN
Sbjct: 101 DGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSN 160

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCRH 141
           IIGI+A +++++PG+LEVEL+ PPKFYKE+ + +   H+QW DGSDFT GQA   RH
Sbjct: 161 IIGIQAFLEEDKPGILEVELNHPPKFYKEI-EPEPRKHTQWTDGSDFTEGQAYVNRH 216

[Close]

BLAST of CmaCh10G011150 vs. NCBI nr
Match: gi|778662235|ref|XP_011659575.1| (PREDICTED: uncharacterized protein LOC105436206 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D   L  SIL  + L IG WQL   N   LV K  F K+QL +EI  NG + KIEI+WSN
Sbjct: 45  DGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSN 104

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQASTCRHA 142
           IIGI+A +++++PG+LEVEL+ PPKFYKE+ + +   H+QW DGSDFT GQA   R++
Sbjct: 105 IIGIQAFLEEDKPGILEVELNHPPKFYKEI-EPEPRKHTQWTDGSDFTEGQAYVNRYS 161

[Close]

BLAST of CmaCh10G011150 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 9.3e-26
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D   L  SIL  + L IG WQL   N   LV K  F K+QL +EI  NG + KIEI+WSN
Sbjct: 101 DGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSN 160

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQA 136
           IIGI+A +++++PG+LEVEL+ PPKFYKE+ + +   H+QW DGSDFT GQA
Sbjct: 161 IIGIQAFLEEDKPGILEVELNHPPKFYKEI-EPEPRKHTQWTDGSDFTEGQA 211

[Close]

BLAST of CmaCh10G011150 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 9.3e-26
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 24  DKRELWVSILNPMKLYIGKWQLPLSNTNKLVVKGLFVKKQLCYEISSNGCRVKIEIDWSN 83
           D   L  SIL  + L IG WQL   N   LV K  F K+QL +EI  NG + KIEI+WSN
Sbjct: 101 DGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSN 160

Query: 84  IIGIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVGAHSQWVDGSDFTRGQA 136
           IIGI+A +++++PG+LEVEL+ PPKFYKE+ + +   H+QW DGSDFT GQA
Sbjct: 161 IIGIQAFLEEDKPGILEVELNHPPKFYKEI-EPEPRKHTQWTDGSDFTEGQA 211

[Close]

BLAST of CmaCh10G011150 vs. NCBI nr
Match: gi|659099336|ref|XP_008450548.1| (PREDICTED: uncharacterized protein LOC103492115 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 1


Query: 28  LWVSILNPMKLYIGKWQLPLSNTNK--LVVKGLFVKKQLCYEISSNGCRVKIEIDWSNII 87
           L  SILNP+ LYIG W+    NT K  LVVK  F  KQ+CYE+  NG R KIE+DWSNI+
Sbjct: 7   LMTSILNPLSLYIGIWKFE-GNTEKDELVVKLNFASKQICYELMWNGSRKKIEVDWSNIM 66

Query: 88  GIRAAMKKNEPGVLEVELSEPPKFYKELGQKDVG------AHSQWVDGSDFTRGQASTCR 140
           GI+A++   E G+LEVEL++PP  Y+ L   +         H++WV G DFT+GQA+ CR
Sbjct: 67  GIKASLNDKEHGILEVELAQPPNLYEVLNHNNNNNVESHRRHNKWVVGWDFTQGQAAICR 125

The following BLAST results are available for this feature:

BLAST of CmaCh10G011150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G011150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1F5_CUCSA	6.5e-26	54.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1	[more]
A0A0A0LYW9_CUCSA	6.7e-23	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561920 PE=4 SV=1	[more]
A0A059B3G7_EUCGR	9.4e-17	41.53	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03288 PE=4 SV=1	[more]
B9I6Z7_POPTR	2.1e-16	45.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01040g PE=4 SV=2	[more]
A0A0D2TPH7_GOSRA	6.1e-16	37.40	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G306100 PE=4 SV=1	[more]

BLAST of CmaCh10G011150 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24100.1	3.9e-14	38.24	unknown protein	[more]
AT4G30780.1	7.3e-13	37.25	unknown protein	[more]

BLAST of CmaCh10G011150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099334\|ref\|XP_008450547.1\|	1.1e-26	53.85	PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo]	[more]
gi\|778662235\|ref\|XP_011659575.1\|	4.2e-26	52.54	PREDICTED: uncharacterized protein LOC105436206 [Cucumis sativus]	[more]
gi\|700210915\|gb\|KGN66011.1\|	9.3e-26	54.46	hypothetical protein Csa_1G561420 [Cucumis sativus]	[more]
gi\|659099332\|ref\|XP_008450546.1\|	9.3e-26	54.46	PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]	[more]
gi\|659099336\|ref\|XP_008450548.1\|	1.5e-23	50.83	PREDICTED: uncharacterized protein LOC103492115 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G011150.1	CmaCh10G011150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	FAMILY NOT NAMED	coord: 38..139 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G011150	Lsi06G000570	Bottle gourd (USVL1VR-Ls)	cmalsiB070
CmaCh10G011150	CsGy1G025170	Cucumber (Gy14) v2	cgybcmaB012

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G011150	Cucurbita maxima (Rimu)	cmacmaB074
CmaCh10G011150	Cucumber (Gy14) v1	cgycmaB0517
CmaCh10G011150	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G011150	Cucurbita moschata (Rifu)	cmacmoB070
CmaCh10G011150	Wild cucumber (PI 183967)	cmacpiB061
CmaCh10G011150	Cucumber (Chinese Long) v2	cmacuB059
CmaCh10G011150	Melon (DHL92) v3.5.1	cmameB068
CmaCh10G011150	Watermelon (Charleston Gray)	cmawcgB055
CmaCh10G011150	Watermelon (97103) v1	cmawmB047
CmaCh10G011150	Cucurbita pepo (Zucchini)	cmacpeB081
CmaCh10G011150	Cucurbita pepo (Zucchini)	cmacpeB089
CmaCh10G011150	Bottle gourd (USVL1VR-Ls)	cmalsiB076
CmaCh10G011150	Cucumber (Gy14) v2	cgybcmaB016
CmaCh10G011150	Melon (DHL92) v3.6.1	cmamedB071
CmaCh10G011150	Silver-seed gourd	carcmaB0341
CmaCh10G011150	Cucumber (Chinese Long) v3	cmacucB0069
CmaCh10G011150	Watermelon (97103) v2	cmawmbB061
CmaCh10G011150	Wax gourd	cmawgoB0079
CmaCh10G011150	Wax gourd	cmawgoB0090