CmaCh10G011010 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G011010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ralf-like 9
Location	Cma_Chr10 : 7385971 .. 7386318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGGGAATCATGATTATTTTTATTGTGGTTCTCTTTATTGGCATTAACATGATTGAGATAACAAATGCAACACATTACATCACTTACGATCCTTTGAAACGCAACCGTGATCGTGCATGTAGTCCAACTCATCCTGAATTTTGTATTTTAACTCCTGCAAATCCATATCAAAGAGGTTGTAATCCGATCGATCGTTGCAGAGGAGATGAAAGCAATGATATCATAGATAATGATGAAGAAGATGACATCACAAATAATGATGAAGAAGATGATATCATAGATAATGATGAAGGATATGATAATGCGAGTTGCCCAGCAATAAGTCCTAATGGAAAACTTTAA

mRNA sequence

ATGTCTAAGGGAATCATGATTATTTTTATTGTGGTTCTCTTTATTGGCATTAACATGATTGAGATAACAAATGCAACACATTACATCACTTACGATCCTTTGAAACGCAACCGTGATCGTGCATGTAGTCCAACTCATCCTGAATTTTGTATTTTAACTCCTGCAAATCCATATCAAAGAGGTTGTAATCCGATCGATCGTTGCAGAGGAGATGAAAGCAATGATATCATAGATAATGATGAAGAAGATGACATCACAAATAATGATGAAGAAGATGATATCATAGATAATGATGAAGGATATGATAATGCGAGTTGCCCAGCAATAAGTCCTAATGGAAAACTTTAA

Coding sequence (CDS)

ATGTCTAAGGGAATCATGATTATTTTTATTGTGGTTCTCTTTATTGGCATTAACATGATTGAGATAACAAATGCAACACATTACATCACTTACGATCCTTTGAAACGCAACCGTGATCGTGCATGTAGTCCAACTCATCCTGAATTTTGTATTTTAACTCCTGCAAATCCATATCAAAGAGGTTGTAATCCGATCGATCGTTGCAGAGGAGATGAAAGCAATGATATCATAGATAATGATGAAGAAGATGACATCACAAATAATGATGAAGAAGATGATATCATAGATAATGATGAAGGATATGATAATGCGAGTTGCCCAGCAATAAGTCCTAATGGAAAACTTTAA

Protein sequence

MSKGIMIIFIVVLFIGINMIEITNATHYITYDPLKRNRDRACSPTHPEFCILTPANPYQRGCNPIDRCRGDESNDIIDNDEEDDITNNDEEDDIIDNDEGYDNASCPAISPNGKL

Homology

[Close]

BLAST of CmaCh10G011010 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1


Query: 1  MSKGIMIIF--IVVLFIGINMIEITNATHYITYDPLKRNRDRA--CSPTHPEFCILTPAN 60
          MSK I +I    +V+F+ +   ++  AT YITY  + R  D A  C   HP  C    AN
Sbjct: 3  MSKSIKVILSLALVVFLALAATKV-EATRYITYPAIDRG-DHAVHCDKAHPNTCKKKEAN 62

Query: 61 PYQRGCNPIDRCRG 71
          PYQRGC  I+RCRG
Sbjct: 63 PYQRGCEKINRCRG 74

[Close]

BLAST of CmaCh10G011010 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-12
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 1   MSKGIMIIFIVVLFIGINMIEITNATHYITYDPLKRNR-DRACSPTHPEFCILTPANPYQ 60
           MSK + ++FI +L +  +MI ITNA  +I Y  +        CSPTHPE C +  ANPYQ
Sbjct: 3   MSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 61  RGCNPIDRCRGDESNDIIDNDEEDDITNNDEEDDIIDNDEGYDNASCPAISPN 113
           RGCN IDRCR  E NDIID +EE              + EG D +  P+ISPN
Sbjct: 63  RGCNRIDRCR--EGNDIIDAEEE--------------HIEG-DASISPSISPN 98

[Close]

BLAST of CmaCh10G011010 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-08
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1


Query: 1  MSKGIMIIF--IVVLFIGINMIEITNATHYITYDPLKRNRDRA--CSPTHPEFCILTPAN 60
          MSK I +I    +V+F+ +   ++  AT YITY  + R  D A  C   HP  C    AN
Sbjct: 3  MSKSIKVILSLALVVFLALAATKV-EATRYITYPAIDRG-DHAVHCDKAHPNTCKKKEAN 62

Query: 61 PYQRGCNPIDRCRG 71
          PYQRGC  I+RCRG
Sbjct: 63 PYQRGCEKINRCRG 74

[Close]

BLAST of CmaCh10G011010 vs. TAIR10
Match: AT2G22055.1 (AT2G22055.1 RALF-like 15)

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 1  MSKGIMII--FIVVLFIGINMIEITNATHYITYDPLKRNRDRA--CSPTHPEFCILTPAN 60
          MSK I +I    ++LF+ +   ++  AT YI+Y  +    D A  C   HP  C    AN
Sbjct: 3  MSKSIKVIVSLALILFLALAATKV-EATRYISYRGMNHG-DHAIHCDKAHPNTCKKQVAN 62

Query: 61 PYQRGCNPIDRCRGD 72
          PY+RGC  I+RCR D
Sbjct: 63 PYRRGCGTIERCRRD 75

[Close]

BLAST of CmaCh10G011010 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-12
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 1   MSKGIMIIFIVVLFIGINMIEITNATHYITYDPLKRNR-DRACSPTHPEFCILTPANPYQ 60
           MSK + ++FI +L +  +MI ITNA  +I Y  +        CSPTHPE C +  ANPYQ
Sbjct: 3   MSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 61  RGCNPIDRCRGDESNDIIDNDEEDDITNNDEEDDIIDNDEGYDNASCPAISPN 113
           RGCN IDRCR  E NDIID +EE              + EG D +  P+ISPN
Sbjct: 63  RGCNRIDRCR--EGNDIIDAEEE--------------HIEG-DASISPSISPN 98

The following BLAST results are available for this feature:

BLAST of CmaCh10G011010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF9_ARATH	1.7e-06	44.59	Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1	[more]

BLAST of CmaCh10G011010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8B1_CUCSA	5.6e-12	46.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1	[more]

BLAST of CmaCh10G011010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61566.1	9.8e-08	44.59	ralf-like 9	[more]
AT2G22055.1	5.4e-06	40.00	RALF-like 15	[more]

BLAST of CmaCh10G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202865\|gb\|KGN57998.1\|	8.1e-12	46.02	hypothetical protein Csa_3G426350 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G011010.1	CmaCh10G011010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 24..70 score: 3.
None	No IPR available	PANTHER	PTHR34270	FAMILY NOT NAMED	coord: 1..81 score: 2.0
None	No IPR available	PANTHER	PTHR34270:SF1	PROTEIN RALF-LIKE 10-RELATED	coord: 1..81 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G011010	Cucumber (Chinese Long) v3	cmacucB0069
CmaCh10G011010	Cucumber (Chinese Long) v3	cmacucB0075
CmaCh10G011010	Watermelon (97103) v2	cmawmbB061
CmaCh10G011010	Watermelon (97103) v2	cmawmbB062
CmaCh10G011010	Wax gourd	cmawgoB0079
CmaCh10G011010	Cucumber (Gy14) v1	cgycmaB0517
CmaCh10G011010	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G011010	Wild cucumber (PI 183967)	cmacpiB061
CmaCh10G011010	Wild cucumber (PI 183967)	cmacpiB066
CmaCh10G011010	Cucumber (Chinese Long) v2	cmacuB059
CmaCh10G011010	Cucumber (Chinese Long) v2	cmacuB068
CmaCh10G011010	Melon (DHL92) v3.5.1	cmameB068
CmaCh10G011010	Melon (DHL92) v3.5.1	cmameB070
CmaCh10G011010	Watermelon (Charleston Gray)	cmawcgB055
CmaCh10G011010	Watermelon (Charleston Gray)	cmawcgB056
CmaCh10G011010	Watermelon (97103) v1	cmawmB047
CmaCh10G011010	Watermelon (97103) v1	cmawmB049
CmaCh10G011010	Bottle gourd (USVL1VR-Ls)	cmalsiB076
CmaCh10G011010	Bottle gourd (USVL1VR-Ls)	cmalsiB079
CmaCh10G011010	Cucumber (Gy14) v2	cgybcmaB016
CmaCh10G011010	Cucumber (Gy14) v2	cgybcmaB022
CmaCh10G011010	Melon (DHL92) v3.6.1	cmamedB071
CmaCh10G011010	Melon (DHL92) v3.6.1	cmamedB073