CmaCh10G006490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G006490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionXyloglucan endotransglucosylase/hydrolase
LocationCma_Chr10 : 2949632 .. 2949868 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACACAAACACAAGCACTACTACCAGCAATAACGCTATCGCGCTGGTGGACTTCTCCAGTTCATGCACAGCTAAGTGCTTCTCAGTCGACCAAGCTTAGGGAAATCCGCGAGAAATACATGATATATGATTACTGCTTACACCCTACACGGAGACGATCCAACGGGGTACTGCCACCAGAATGTTATAGACGGCCATTCAAACACAAACACAAGCACTACGGCCAGCAATAA

mRNA sequence

ATGCGAACACAAACACAAGCACTACTACCAGCAATAACGCTATCGCGCTGGTGGACTTCTCCAGTTCATGCACAGCTAAGTGCTTCTCAGTCGACCAAGCTTAGGGAAATCCGCGAGAAATACATGATATATGATTACTGCTTACACCCTACACGGAGACGATCCAACGGGGTACTGCCACCAGAATGTTATAGACGGCCATTCAAACACAAACACAAGCACTACGGCCAGCAATAA

Coding sequence (CDS)

ATGCGAACACAAACACAAGCACTACTACCAGCAATAACGCTATCGCGCTGGTGGACTTCTCCAGTTCATGCACAGCTAAGTGCTTCTCAGTCGACCAAGCTTAGGGAAATCCGCGAGAAATACATGATATATGATTACTGCTTACACCCTACACGGAGACGATCCAACGGGGTACTGCCACCAGAATGTTATAGACGGCCATTCAAACACAAACACAAGCACTACGGCCAGCAATAA

Protein sequence

MRTQTQALLPAITLSRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPFKHKHKHYGQQ
Homology
[Close]
BLAST of CmaCh10G006490 vs. Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-10
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ASQ TK+++IR+ +MIYDYC      R  GV+PPEC ++ F
Sbjct: 241 SNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKKQF 292

[Close]
BLAST of CmaCh10G006490 vs. TrEMBL
Match: N0DX88_CUCSA (Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth20 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.9e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 17  WWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           WWTSP H+QL+  Q  KL ++R+KYMIYDYC  P R+R NG++PPECYRR +
Sbjct: 242 WWTSPDHSQLTDRQLAKLGQVRKKYMIYDYCRDPARKRPNGLMPPECYRRQY 293

[Close]
BLAST of CmaCh10G006490 vs. TrEMBL
Match: R0H066_9BRAS (Xyloglucan endotransglucosylase/hydrolase OS=Capsella rubella GN=CARUB_v10006385mg PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ASQ T++++IR+ +MIYDYC      R  GV+PPEC +R F
Sbjct: 237 SNWWTSPSFSQLTASQLTRMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKRQF 288

[Close]
BLAST of CmaCh10G006490 vs. TrEMBL
Match: A0A0D2R3M9_GOSRA (Xyloglucan endotransglucosylase/hydrolase OS=Gossypium raimondii GN=B456_010G074000 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-07
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           + WWTSP  +QLS+SQ  +L  +R+ +MIYDYC     +R NG +PPEC+++ F
Sbjct: 233 ANWWTSPSFSQLSSSQMGQLNWVRQNFMIYDYC--KDTKRFNGQIPPECFKQQF 284

[Close]
BLAST of CmaCh10G006490 vs. TrEMBL
Match: W9S4R4_9ROSA (Xyloglucan endotransglucosylase/hydrolase OS=Morus notabilis GN=L484_003659 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-07
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 17  WWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           WW +PV++QLS+++  +L  +R  YMIYDYC     +R NG +PPEC++R F
Sbjct: 239 WWNNPVYSQLSSAKLGQLNWVRSNYMIYDYC--KDTKRFNGQIPPECFKRQF 288

[Close]
BLAST of CmaCh10G006490 vs. TrEMBL
Match: A0A061GNK7_THECC (Xyloglucan endotransglucosylase/hydrolase OS=Theobroma cacao GN=TCM_037831 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-07
Identity = 24/54 (44.44%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           + WWTSP ++QLS+S+  +++ +R+ +MIYDYC     +R NG +PPEC++  F
Sbjct: 240 ANWWTSPTYSQLSSSKMGQMKWVRDNFMIYDYC--KDTKRFNGQMPPECFKPQF 291

[Close]
BLAST of CmaCh10G006490 vs. TAIR10
Match: AT4G28850.1 (AT4G28850.1 xyloglucan endotransglucosylase/hydrolase 26)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ASQ TK+++IR+ +MIYDYC      R  GV+PPEC ++ F
Sbjct: 241 SNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKKQF 292

[Close]
BLAST of CmaCh10G006490 vs. NCBI nr
Match: gi|449465675|ref|XP_004150553.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 17  WWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           WWTSP H+QL+  Q  KL ++R+KYMIYDYC  P R+R NG++PPECYRR +
Sbjct: 242 WWTSPDHSQLTDRQLAKLGQVRKKYMIYDYCRDPARKRPNGLMPPECYRRQY 293

[Close]
BLAST of CmaCh10G006490 vs. NCBI nr
Match: gi|659125573|ref|XP_008462754.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 17  WWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYR 66
           WWTSP H+QL+  Q  KL ++R+KYMIYDYC  P R+R NG +PPECYR
Sbjct: 242 WWTSPDHSQLTVRQLAKLGQVRKKYMIYDYCRDPARKRPNGRMPPECYR 290

[Close]
BLAST of CmaCh10G006490 vs. NCBI nr
Match: gi|565448350|ref|XP_006285072.1| (hypothetical protein CARUB_v10006385mg [Capsella rubella])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ASQ T++++IR+ +MIYDYC      R  GV+PPEC +R F
Sbjct: 237 SNWWTSPSFSQLTASQLTRMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKRQF 288

[Close]
BLAST of CmaCh10G006490 vs. NCBI nr
Match: gi|15235455|ref|NP_194614.1| (xyloglucan endotransglucosylase/hydrolase 26 [Arabidopsis thaliana])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ASQ TK+++IR+ +MIYDYC      R  GV+PPEC ++ F
Sbjct: 241 SNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKKQF 292

[Close]
BLAST of CmaCh10G006490 vs. NCBI nr
Match: gi|727550463|ref|XP_010447909.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Camelina sativa])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 15  SRWWTSPVHAQLSASQSTKLREIREKYMIYDYCLHPTRRRSNGVLPPECYRRPF 69
           S WWTSP  +QL+ SQ T++++IR+ +MIYDYC      R  GV+PPEC +R F
Sbjct: 241 SNWWTSPSFSQLTPSQLTRMQKIRDGFMIYDYC--KDTNRFKGVMPPECSKRQF 292

The following BLAST results are available for this feature:
BLAST of CmaCh10G006490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XTH26_ARATH2.3e-1053.70Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis tha... [more]
BLAST of CmaCh10G006490 vs. TrEMBL
Match NameE-valueIdentityDescription
N0DX88_CUCSA5.9e-1361.54Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus GN=xth20 PE=3 SV=1[more]
R0H066_9BRAS2.6e-0853.70Xyloglucan endotransglucosylase/hydrolase OS=Capsella rubella GN=CARUB_v10006385... [more]
A0A0D2R3M9_GOSRA2.8e-0748.15Xyloglucan endotransglucosylase/hydrolase OS=Gossypium raimondii GN=B456_010G074... [more]
W9S4R4_9ROSA4.8e-0748.08Xyloglucan endotransglucosylase/hydrolase OS=Morus notabilis GN=L484_003659 PE=3... [more]
A0A061GNK7_THECC4.8e-0744.44Xyloglucan endotransglucosylase/hydrolase OS=Theobroma cacao GN=TCM_037831 PE=3 ... [more]
BLAST of CmaCh10G006490 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28850.11.3e-1153.70 xyloglucan endotransglucosylase/hydrolase 26[more]
BLAST of CmaCh10G006490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465675|ref|XP_004150553.1|8.5e-1361.54PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Cucumi... [more]
gi|659125573|ref|XP_008462754.1|9.4e-1263.27PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Cucumi... [more]
gi|565448350|ref|XP_006285072.1|3.7e-0853.70hypothetical protein CARUB_v10006385mg [Capsella rubella][more]
gi|15235455|ref|NP_194614.1|3.7e-0853.70xyloglucan endotransglucosylase/hydrolase 26 [Arabidopsis thaliana][more]
gi|727550463|ref|XP_010447909.1|1.4e-0751.85PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Cameli... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010713XET_C
IPR013320ConA-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
GO:0048046apoplast
Vocabulary: Biological Process
TermDefinition
GO:0006073cellular glucan metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016762xyloglucan:xyloglucosyl transferase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0071554 cell wall organization or biogenesis
cellular_component GO:0048046 apoplast
cellular_component GO:0005618 cell wall
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G006490.1CmaCh10G006490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010713Xyloglucan endo-transglycosylase, C-terminalPFAMPF06955XET_Ccoord: 15..63
score: 1.5
IPR013320Concanavalin A-like lectin/glucanase domainGENE3DG3DSA:2.60.120.200coord: 15..66
score: 1.
NoneNo IPR availablePANTHERPTHR31062FAMILY NOT NAMEDcoord: 13..69
score: 2.8
NoneNo IPR availablePANTHERPTHR31062:SF55XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 26-RELATEDcoord: 13..69
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G006490Cucumber (Chinese Long) v3cmacucB0064
CmaCh10G006490Cucumber (Chinese Long) v3cmacucB0081
CmaCh10G006490Watermelon (97103) v2cmawmbB058
CmaCh10G006490Watermelon (97103) v2cmawmbB084
CmaCh10G006490Watermelon (97103) v2cmawmbB079
CmaCh10G006490Wax gourdcmawgoB0052
CmaCh10G006490Wax gourdcmawgoB0059
CmaCh10G006490Wax gourdcmawgoB0076
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB072
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB086
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB097
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB107
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB115
CmaCh10G006490Cucurbita maxima (Rimu)cmacmaB119
CmaCh10G006490Cucumber (Gy14) v1cgycmaB0283
CmaCh10G006490Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G006490Cucurbita moschata (Rifu)cmacmoB068
CmaCh10G006490Cucurbita moschata (Rifu)cmacmoB080
CmaCh10G006490Cucurbita moschata (Rifu)cmacmoB086
CmaCh10G006490Cucurbita moschata (Rifu)cmacmoB095
CmaCh10G006490Wild cucumber (PI 183967)cmacpiB073
CmaCh10G006490Cucumber (Chinese Long) v2cmacuB075
CmaCh10G006490Melon (DHL92) v3.5.1cmameB058
CmaCh10G006490Melon (DHL92) v3.5.1cmameB061
CmaCh10G006490Melon (DHL92) v3.5.1cmameB073
CmaCh10G006490Melon (DHL92) v3.5.1cmameB074
CmaCh10G006490Watermelon (Charleston Gray)cmawcgB047
CmaCh10G006490Watermelon (Charleston Gray)cmawcgB070
CmaCh10G006490Watermelon (97103) v1cmawmB066
CmaCh10G006490Watermelon (97103) v1cmawmB070
CmaCh10G006490Cucurbita pepo (Zucchini)cmacpeB080
CmaCh10G006490Cucurbita pepo (Zucchini)cmacpeB093
CmaCh10G006490Cucurbita pepo (Zucchini)cmacpeB101
CmaCh10G006490Bottle gourd (USVL1VR-Ls)cmalsiB049
CmaCh10G006490Bottle gourd (USVL1VR-Ls)cmalsiB074
CmaCh10G006490Cucumber (Gy14) v2cgybcmaB010
CmaCh10G006490Cucumber (Gy14) v2cgybcmaB154
CmaCh10G006490Cucumber (Gy14) v2cgybcmaB290
CmaCh10G006490Cucumber (Gy14) v2cgybcmaB584
CmaCh10G006490Melon (DHL92) v3.6.1cmamedB079
CmaCh10G006490Melon (DHL92) v3.6.1cmamedB060
CmaCh10G006490Melon (DHL92) v3.6.1cmamedB063
CmaCh10G006490Melon (DHL92) v3.6.1cmamedB077
CmaCh10G006490Silver-seed gourdcarcmaB0044
CmaCh10G006490Silver-seed gourdcarcmaB0166
CmaCh10G006490Silver-seed gourdcarcmaB0793
CmaCh10G006490Silver-seed gourdcarcmaB1234
CmaCh10G006490Silver-seed gourdcarcmaB1416