CmaCh10G003680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleolar and coiled-body phosphoprotein 1
Location	Cma_Chr10 : 1692863 .. 1693153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGAACCCTAACCAATTCTGTTAGTCCATCTCTTCTCGCCTTCAAACCTCGTCAAGTTCTTCTCTCCCACCACGCTATGAAGCAAAGAAACGACGCCCAAACTCCCAAGTCTGCCGATGAAGCCGCATCCTTACACCCGGAGCAGAGGACTCTTCTTCTTCACGCTGTAGCTTTCTTTTTGGAGCACAATGGCTTCTCCAAAACCCTCAAAAAGTTTCGTTCCGAAGCGCAGATTGAGGTCCGTACTTCTTCCATGTCTCTAGAAAAACAGTTATTCGCACTGTAG

mRNA sequence

ATGTCCCGAACCCTAACCAATTCTGTTAGTCCATCTCTTCTCGCCTTCAAACCTCGTCAAGTTCTTCTCTCCCACCACGCTATGAAGCAAAGAAACGACGCCCAAACTCCCAAGTCTGCCGATGAAGCCGCATCCTTACACCCGGAGCAGAGGACTCTTCTTCTTCACGCTGTAGCTTTCTTTTTGGAGCACAATGGCTTCTCCAAAACCCTCAAAAAGTTTCGTTCCGAAGCGCAGATTGAGGTCCGTACTTCTTCCATGTCTCTAGAAAAACAGTTATTCGCACTGTAG

Coding sequence (CDS)

ATGTCCCGAACCCTAACCAATTCTGTTAGTCCATCTCTTCTCGCCTTCAAACCTCGTCAAGTTCTTCTCTCCCACCACGCTATGAAGCAAAGAAACGACGCCCAAACTCCCAAGTCTGCCGATGAAGCCGCATCCTTACACCCGGAGCAGAGGACTCTTCTTCTTCACGCTGTAGCTTTCTTTTTGGAGCACAATGGCTTCTCCAAAACCCTCAAAAAGTTTCGTTCCGAAGCGCAGATTGAGGTCCGTACTTCTTCCATGTCTCTAGAAAAACAGTTATTCGCACTGTAG

Protein sequence

MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSSMSLEKQLFAL

Homology

[Close]

BLAST of CmaCh10G003680 vs. TrEMBL
Match: A0A0A0L738_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G135020 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADE  SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSSMSL 90
          RSEAQIE  +  + L
Sbjct: 68 RSEAQIEGSSKDLLL 82

[Close]

BLAST of CmaCh10G003680 vs. TrEMBL
Match: M5XB01_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007564mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.0e-11
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 1


Query: 1  MSRTLTNS---VSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHA 60
          M ++LT++   ++P+LLAF+PRQV L++  ++    ++   S+D   +L P Q+  LLHA
Sbjct: 1  MPKSLTSTQDTINPTLLAFRPRQVQLAN--LEDMKHSKPNISSDSTQTLSPGQKGPLLHA 60

Query: 61 VAFFLEHNGFSKTLKKFRSEAQIE---VRTSSMSLEK 92
          VA FLE NGFSKTLKKFRSEAQIE    + SS+ LE+
Sbjct: 61 VARFLESNGFSKTLKKFRSEAQIEKSGPKESSLDLEE 95

[Close]

BLAST of CmaCh10G003680 vs. TrEMBL
Match: B9HAX3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07280g PE=4 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 6  TNSVSPSLLAFKPRQVLLSHHA---MKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFL 65
          T +++P+LL+FKPRQVLL+ +    MKQ N         E+ +L PEQ+T+LLH++A +L
Sbjct: 9  TVNINPNLLSFKPRQVLLNSNRPPIMKQENTT-------ESQTLKPEQKTILLHSIANYL 68

Query: 66 EH-NGFSKTLKKFRSEAQIE 82
          E+  GFSKTLKKF+SEA+ E
Sbjct: 69 ENTGGFSKTLKKFKSEAKFE 81

[Close]

BLAST of CmaCh10G003680 vs. TrEMBL
Match: B9RWZ8_RICCO (Cylicin-2, putative OS=Ricinus communis GN=RCOM_1708080 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 6  TNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHN 65
          T  V+PS+LAFKPRQVLL               + ++   L PEQ+TLLL+++A +LE +
Sbjct: 9  TVEVNPSILAFKPRQVLLLSKPPASSMKLDDGSNNNDKLILKPEQKTLLLNSIAQYLERS 68

Query: 66 GFSKTLKKFRSEAQIE 82
          GFSKT+KKFRSEA+I+
Sbjct: 69 GFSKTVKKFRSEARIQ 84

[Close]

BLAST of CmaCh10G003680 vs. TrEMBL
Match: A0A067F734_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013539mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 6  TNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHN 65
          T S++PSL++FKPRQVLL+      + +A+   +     +L PEQ+ LLL +VA +L+ N
Sbjct: 9  TISINPSLISFKPRQVLLA------KANAEPSMNKSSTRALKPEQKVLLLRSVAGYLKSN 68

Query: 66 GFSKTLKKFRSEAQIE 82
          GF KTLKKF SEAQIE
Sbjct: 69 GFCKTLKKFLSEAQIE 78

[Close]

BLAST of CmaCh10G003680 vs. NCBI nr
Match: gi|659076131|ref|XP_008438518.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-20
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADEA SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADEALSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSS---MSLEK 92
          RSEAQI+  +S    +SLE+
Sbjct: 68 RSEAQIQKGSSKDLLLSLEE 87

[Close]

BLAST of CmaCh10G003680 vs. NCBI nr
Match: gi|778678184|ref|XP_011650932.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADE  SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSS---MSLEK 92
          RSEAQIE  +S    +SLE+
Sbjct: 68 RSEAQIEKGSSKDLLLSLEE 87

[Close]

BLAST of CmaCh10G003680 vs. NCBI nr
Match: gi|449432550|ref|XP_004134062.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADE  SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSS---MSLEK 92
          RSEAQIE  +S    +SLE+
Sbjct: 68 RSEAQIEKGSSKDLLLSLEE 87

[Close]

BLAST of CmaCh10G003680 vs. NCBI nr
Match: gi|778678187|ref|XP_011650933.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X4 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADE  SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSSMSL 90
          RSEAQIE  +  + L
Sbjct: 68 RSEAQIEGSSKDLLL 82

[Close]

BLAST of CmaCh10G003680 vs. NCBI nr
Match: gi|700201721|gb|KGN56854.1| (hypothetical protein Csa_3G135020 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 16 FKPRQVLLSHHAMKQRND-AQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKF 75
          FKPRQVLLSHH MKQ N+  Q P SADE  SLHP+ RTLLLHAVAFFLE NGFSKTLKKF
Sbjct: 8  FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 76 RSEAQIEVRTSSMSL 90
          RSEAQIE  +  + L
Sbjct: 68 RSEAQIEGSSKDLLL 82

The following BLAST results are available for this feature:

BLAST of CmaCh10G003680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G003680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L738_CUCSA	1.6e-20	74.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G135020 PE=4 SV=1	[more]
M5XB01_PRUPE	4.0e-11	49.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007564mg PE=4 SV=1	[more]
B9HAX3_POPTR	1.3e-09	51.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07280g PE=4 SV=2	[more]
B9RWZ8_RICCO	1.7e-09	50.00	Cylicin-2, putative OS=Ricinus communis GN=RCOM_1708080 PE=4 SV=1	[more]
A0A067F734_CITSI	1.7e-09	51.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013539mg PE=4 SV=1	[more]

BLAST of CmaCh10G003680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh10G003680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076131\|ref\|XP_008438518.1\|	1.4e-20	73.75	PREDICTED: nucleolar and coiled-body phosphoprotein 1 [Cucumis melo]	[more]
gi\|778678184\|ref\|XP_011650932.1\|	1.8e-20	73.75	PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X3 [Cucumis sativu...	[more]
gi\|449432550\|ref\|XP_004134062.1\|	1.8e-20	73.75	PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X1 [Cucumis sativu...	[more]
gi\|778678187\|ref\|XP_011650933.1\|	2.3e-20	74.67	PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X4 [Cucumis sativu...	[more]
gi\|700201721\|gb\|KGN56854.1\|	2.3e-20	74.67	hypothetical protein Csa_3G135020 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006594	LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003680.1	CmaCh10G003680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 50..82 score: 0.
IPR006594	LIS1 homology motif	PROFILE	PS50896	LISH	coord: 50..82 score: 9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G003680	Cla018866	Watermelon (97103) v1	cmawmB071
CmaCh10G003680	ClCG06G013720	Watermelon (Charleston Gray)	cmawcgB071
CmaCh10G003680	CmoCh10G003980	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G003680	CmoCh11G003570	Cucurbita moschata (Rifu)	cmacmoB068
CmaCh10G003680	Lsi06G012160	Bottle gourd (USVL1VR-Ls)	cmalsiB075
CmaCh10G003680	Cp4.1LG04g13230	Cucurbita pepo (Zucchini)	cmacpeB092
CmaCh10G003680	Cp4.1LG18g06560	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G003680	Cla97C06G123180	Watermelon (97103) v2	cmawmbB081
CmaCh10G003680	Bhi02G000166	Wax gourd	cmawgoB0077
CmaCh10G003680	Carg09060	Silver-seed gourd	carcmaB0828
CmaCh10G003680	Carg15215	Silver-seed gourd	carcmaB1091

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh10G003680	CmaCh11G003550	Cucurbita maxima (Rimu)	cmacmaB072

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G003680	Cucumber (Gy14) v2	cgybcmaB015
CmaCh10G003680	Melon (DHL92) v3.6.1	cmamedB070
CmaCh10G003680	Cucumber (Chinese Long) v3	cmacucB0068
CmaCh10G003680	Cucumber (Gy14) v1	cgycmaB0785
CmaCh10G003680	Wild cucumber (PI 183967)	cmacpiB060
CmaCh10G003680	Cucumber (Chinese Long) v2	cmacuB058
CmaCh10G003680	Melon (DHL92) v3.5.1	cmameB067