CmaCh10G003630 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G003630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr10 : 1673359 .. 1673661 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGGAGGTTTTGGAGGAATTCCGGCCACTTACACCATTAAGATCACTATCGCTTCAACTCCCCAAAGAAAAAGCAGACCACAATATTCAAGAACAAGAAAACTGCCAGACGCCGACAGCCGCCGCCACCCGCCTGAAGCCGACCATGGTGTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCTCGAAGAAAATTGAACTTTCTGCCGCCGCCGTTCTTTGAAGCTCCTCAAGATCTCAGTTCTGTGTATATTGAGCTTCAAATTCCTTCCAAGAAGATCAAACCCATTACTACATGA

mRNA sequence

ATGGGTATGGAGGTTTTGGAGGAATTCCGGCCACTTACACCATTAAGATCACTATCGCTTCAACTCCCCAAAGAAAAAGCAGACCACAATATTCAAGAACAAGAAAACTGCCAGACGCCGACAGCCGCCGCCACCCGCCTGAAGCCGACCATGGTGTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCTCGAAGAAAATTGAACTTTCTGCCGCCGCCGTTCTTTGAAGCTCCTCAAGATCTCAGTTCTGTGTATATTGAGCTTCAAATTCCTTCCAAGAAGATCAAACCCATTACTACATGA

Coding sequence (CDS)

ATGGGTATGGAGGTTTTGGAGGAATTCCGGCCACTTACACCATTAAGATCACTATCGCTTCAACTCCCCAAAGAAAAAGCAGACCACAATATTCAAGAACAAGAAAACTGCCAGACGCCGACAGCCGCCGCCACCCGCCTGAAGCCGACCATGGTGTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCTCGAAGAAAATTGAACTTTCTGCCGCCGCCGTTCTTTGAAGCTCCTCAAGATCTCAGTTCTGTGTATATTGAGCTTCAAATTCCTTCCAAGAAGATCAAACCCATTACTACATGA

Protein sequence

MGMEVLEEFRPLTPLRSLSLQLPKEKADHNIQEQENCQTPTAAATRLKPTMVCPPAPKKPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPITT
Homology
[Close]
BLAST of CmaCh10G003630 vs. TrEMBL
Match: A0A0A0M005_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-32
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKADHNIQE--QENCQTPTAAATRLKPTMVCPPAPK 60
           MGME+L+EF PLTPL SL   +PK K +   QE  +E C TPTAAA RLKP ++CPPAPK
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60

Query: 61  KPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPI 99
           KPRPPRRKLNFLPPPFFEAPQDL+SVY +  IPSKKIKPI
Sbjct: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]
BLAST of CmaCh10G003630 vs. TrEMBL
Match: A0A151SX09_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014753 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.2e-11
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MGMEVLEEFRPLTPLRSL---------SLQLPKEKADHNIQ-EQENCQTPTAAATRLKPT 60
          MG+E+LEEFRP+TP+R+L          L   KE  + +++ E E C TPT+ +  L+  
Sbjct: 1  MGLEILEEFRPITPVRTLVPNARTLKHDLGTTKEVLNEDVENENEECHTPTSPSQTLRTP 60

Query: 61 MVCPPAPKKPRPPRRKLNFLPPP--FFEAPQDLSSVYI 87
          +VCPP PKKPR  R++  F PP   F   P DL+SV++
Sbjct: 61 LVCPPPPKKPRVTRKRNKFQPPSQGFLHVPHDLASVFL 98

[Close]
BLAST of CmaCh10G003630 vs. TrEMBL
Match: A0A059CL15_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKAD---------HNIQEQEN-CQTPTAAATRLK-- 60
           MGM V EEFRP TP+R++ +    + +D         H+  + E+ C+TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  PTMVCPPAPKKPRPPRRKLNFLPPP-FFEAPQDLSSVYIELQIPSKKIK 97
               CPPAPKKPRPPRRK +  PP  FF+ P DL+SV++ +  PSKKI+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

[Close]
BLAST of CmaCh10G003630 vs. TrEMBL
Match: V7B2R0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233800g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSL---------SLQLPKEKADHNIQEQENCQTPTAAATRLKPTM 60
           MG+++LEEFRP+TP+R++          L   KE  + ++ E+  C TPT+ + +L+  +
Sbjct: 1   MGLQILEEFRPITPIRTVVPTNRTLKHDLGTTKEVVNEDVVEE--CHTPTSPSQKLRTPL 60

Query: 61  VCPPAPKKPR-PPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKI 96
           VCPPAPKKPR PPRR L+     FF    DL+S+++ L+ P++ +
Sbjct: 61  VCPPAPKKPRVPPRRNLDPPSEGFFSVSHDLASIFV-LRTPNQPL 102

[Close]
BLAST of CmaCh10G003630 vs. TrEMBL
Match: A0A0B2RVM3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_013257 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSL--------------SLQLPKEKADHNIQEQENCQTPTAAATR 60
           MG+E+LEEFRP+TP+R++              +    KE  + ++  +E C TPT+ + +
Sbjct: 1   MGLEILEEFRPITPIRTVVPTVRTTLKHDLGTTTTTTKEVLNEDVVIEEECHTPTSPSQK 60

Query: 61  LKPT--MVCPPAPKKPRPPRRKLNFLPPP----FFEAPQDLSSVYIELQIPS 93
           L PT  +VCPPAPKKPR   R+L  L PP    FF+ P DL+SV++ L+ PS
Sbjct: 61  L-PTNPLVCPPAPKKPRVVPRRLKNLDPPSQEGFFQVPHDLASVFV-LRSPS 110

[Close]
BLAST of CmaCh10G003630 vs. NCBI nr
Match: gi|700210400|gb|KGN65496.1| (hypothetical protein Csa_1G426970 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKADHNIQE--QENCQTPTAAATRLKPTMVCPPAPK 60
           MGME+L+EF PLTPL SL   +PK K +   QE  +E C TPTAAA RLKP ++CPPAPK
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60

Query: 61  KPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPI 99
           KPRPPRRKLNFLPPPFFEAPQDL+SVY +  IPSKKIKPI
Sbjct: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]
BLAST of CmaCh10G003630 vs. NCBI nr
Match: gi|1012348130|gb|KYP59321.1| (hypothetical protein KK1_014753 [Cajanus cajan])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MGMEVLEEFRPLTPLRSL---------SLQLPKEKADHNIQ-EQENCQTPTAAATRLKPT 60
          MG+E+LEEFRP+TP+R+L          L   KE  + +++ E E C TPT+ +  L+  
Sbjct: 1  MGLEILEEFRPITPVRTLVPNARTLKHDLGTTKEVLNEDVENENEECHTPTSPSQTLRTP 60

Query: 61 MVCPPAPKKPRPPRRKLNFLPPP--FFEAPQDLSSVYI 87
          +VCPP PKKPR  R++  F PP   F   P DL+SV++
Sbjct: 61 LVCPPPPKKPRVTRKRNKFQPPSQGFLHVPHDLASVFL 98

[Close]
BLAST of CmaCh10G003630 vs. NCBI nr
Match: gi|629113935|gb|KCW78610.1| (hypothetical protein EUGRSUZ_C00076 [Eucalyptus grandis])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKAD---------HNIQEQEN-CQTPTAAATRLK-- 60
           MGM V EEFRP TP+R++ +    + +D         H+  + E+ C+TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  PTMVCPPAPKKPRPPRRKLNFLPPP-FFEAPQDLSSVYIELQIPSKKIK 97
               CPPAPKKPRPPRRK +  PP  FF+ P DL+SV++ +  PSKKI+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

[Close]
BLAST of CmaCh10G003630 vs. NCBI nr
Match: gi|731408490|ref|XP_010656871.1| (PREDICTED: uncharacterized protein LOC104880788 [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSLSLQL--------PKEKADHNIQEQENCQTPTAAATRLKPTMV 60
           MG+  LEE RP+TP+R  ++          P+ K  H+  E E C+TP +    L+P +V
Sbjct: 1   MGLN-LEELRPITPIRVAAISTRPANLTTTPEFKELHS--EDEECRTPKSEDQVLRPPLV 60

Query: 61  CPPAPKKPRPPRRK-LNFLPPPFFEAPQDLSSVYIELQIPSKKIK 97
           CPPAP+KPRP +RK     P  FF+ P DL+S+++ L  PSKK++
Sbjct: 61  CPPAPRKPRPAKRKAAGPAPREFFQVPYDLASIFVVLSQPSKKMR 102

[Close]
BLAST of CmaCh10G003630 vs. NCBI nr
Match: gi|593330641|ref|XP_007138747.1| (hypothetical protein PHAVU_009G233800g [Phaseolus vulgaris])

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MGMEVLEEFRPLTPLRSL---------SLQLPKEKADHNIQEQENCQTPTAAATRLKPTM 60
           MG+++LEEFRP+TP+R++          L   KE  + ++ E+  C TPT+ + +L+  +
Sbjct: 1   MGLQILEEFRPITPIRTVVPTNRTLKHDLGTTKEVVNEDVVEE--CHTPTSPSQKLRTPL 60

Query: 61  VCPPAPKKPR-PPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKI 96
           VCPPAPKKPR PPRR L+     FF    DL+S+++ L+ P++ +
Sbjct: 61  VCPPAPKKPRVPPRRNLDPPSEGFFSVSHDLASIFV-LRTPNQPL 102

The following BLAST results are available for this feature:
BLAST of CmaCh10G003630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh10G003630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M005_CUCSA3.3e-3272.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426970 PE=4 SV=1[more]
A0A151SX09_CAJCA9.2e-1142.86Uncharacterized protein OS=Cajanus cajan GN=KK1_014753 PE=4 SV=1[more]
A0A059CL15_EUCGR1.6e-1042.20Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00076 PE=4 SV=1[more]
V7B2R0_PHAVU3.5e-1040.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233800g PE=4 SV=1[more]
A0A0B2RVM3_GLYSO3.5e-1041.96Uncharacterized protein OS=Glycine soja GN=glysoja_013257 PE=4 SV=1[more]
BLAST of CmaCh10G003630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh10G003630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210400|gb|KGN65496.1|4.7e-3272.00hypothetical protein Csa_1G426970 [Cucumis sativus][more]
gi|1012348130|gb|KYP59321.1|1.3e-1042.86hypothetical protein KK1_014753 [Cajanus cajan][more]
gi|629113935|gb|KCW78610.1|2.3e-1042.20hypothetical protein EUGRSUZ_C00076 [Eucalyptus grandis][more]
gi|731408490|ref|XP_010656871.1|3.9e-1041.90PREDICTED: uncharacterized protein LOC104880788 [Vitis vinifera][more]
gi|593330641|ref|XP_007138747.1|5.0e-1040.00hypothetical protein PHAVU_009G233800g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G003630.1CmaCh10G003630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35162FAMILY NOT NAMEDcoord: 27..95
score: 2.7
NoneNo IPR availablePANTHERPTHR35162:SF2SUBFAMILY NOT NAMEDcoord: 27..95
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G003630CmoCh10G003930Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G003630Lsi06G012190Bottle gourd (USVL1VR-Ls)cmalsiB068
CmaCh10G003630Cp4.1LG18g06430Cucurbita pepo (Zucchini)cmacpeB080
CmaCh10G003630Cp4.1LG04g13240Cucurbita pepo (Zucchini)cmacpeB092
CmaCh10G003630Cla97C06G123220Watermelon (97103) v2cmawmbB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G003630Cucumber (Chinese Long) v3cmacucB0060
CmaCh10G003630Cucumber (Chinese Long) v3cmacucB0068
CmaCh10G003630Watermelon (97103) v2cmawmbB081
CmaCh10G003630Wax gourdcmawgoB0077
CmaCh10G003630Cucurbita maxima (Rimu)cmacmaB072
CmaCh10G003630Cucumber (Gy14) v1cgycmaB0785
CmaCh10G003630Cucurbita moschata (Rifu)cmacmoB068
CmaCh10G003630Wild cucumber (PI 183967)cmacpiB060
CmaCh10G003630Cucumber (Chinese Long) v2cmacuB058
CmaCh10G003630Melon (DHL92) v3.5.1cmameB067
CmaCh10G003630Watermelon (Charleston Gray)cmawcgB071
CmaCh10G003630Watermelon (97103) v1cmawmB071
CmaCh10G003630Bottle gourd (USVL1VR-Ls)cmalsiB075
CmaCh10G003630Cucumber (Gy14) v2cgybcmaB015
CmaCh10G003630Melon (DHL92) v3.6.1cmamedB070
CmaCh10G003630Silver-seed gourdcarcmaB0828
CmaCh10G003630Silver-seed gourdcarcmaB1091