CmaCh10G003580 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G003580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr10 : 1653489 .. 1654068 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATATAACCTGATATTTATTAGAGAAGATAAGAGTCAAGAAATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCTCTCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATTGTTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTATGAAACAAATACTAACCTGTGCCAATGGATTTCACCACCCTAAACATGTACTGATATTTCCTTATTTATGGTTATGGATATGCCAAATGCAGGTTCACGAAGACGAGCTCAATAGACCATCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGACTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAGCCATAGATAACATATCAATTTTAAAGATGAAATGAACTATTCATACGTGTACTGAACTTCAGATACTCTCTTTTGTTTTATAATCTATCAAATGCTCGTTTTTTTCATATACGATAGAATCATT

mRNA sequence

TCTATATAACCTGATATTTATTAGAGAAGATAAGAGTCAAGAAATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCTCTCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATTGTTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTTCACGAAGACGAGCTCAATAGACCATCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGACTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAGCCATAGATAACATATCAATTTTAAAGATGAAATGAACTATTCATACGTGTACTGAACTTCAGATACTCTCTTTTGTTTTATAATCTATCAAATGCTCGTTTTTTTCATATACGATAGAATCATT

Coding sequence (CDS)

ATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCTCTCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATTGTTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTTCACGAAGACGAGCTCAATAGACCATCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGACTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAG

Protein sequence

MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Homology
[Close]
BLAST of CmaCh10G003580 vs. TrEMBL
Match: A0A0A0LUD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427550 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 74/108 (68.52%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVHE 60
           M SSHF+FF LLF  FYL S+  L SPP    S GR ARKYLG+ FS+        EVHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           DE NRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of CmaCh10G003580 vs. TrEMBL
Match: A0A061FIL0_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_035994 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-08
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHR----LQSPPLS---TGRPARKYLGSLFSNPESEFLKV 60
           M   HF+   LL  + YL S +     L S P S   TGR + + L     + ++ +LK 
Sbjct: 1   MRPPHFILLCLLTAVMYLWSPYNEFQNLASSPSSIFLTGRRSLRGLKMPLPDHKNRYLKS 60

Query: 61  EVHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           EV  DE  + +AKD  +       S   M +L Y+IDYHGVTTHP PTPKHP
Sbjct: 61  EVAVDEALQSAAKDSMALRYSRSHSNGNMEDLAYYIDYHGVTTHPTPTPKHP 112

[Close]
BLAST of CmaCh10G003580 vs. TrEMBL
Match: D7SQE2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00490 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-08
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 43  FSNPESEFLKVEVHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTP 102
           FSN ++E+ +++  +DE+ +PS     S   E+ +S   + E+VYHIDYHGV THP PTP
Sbjct: 3   FSNRKNEYQEIQDVDDEM-KPSTMQEDSIAVEHRSSSKNLEEIVYHIDYHGVMTHPTPTP 62

Query: 103 KHP 106
           KHP
Sbjct: 63  KHP 64

[Close]
BLAST of CmaCh10G003580 vs. TrEMBL
Match: A0A067F3K8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034028mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDEL 60
           M S HF+F  ++    YL S     S   ST  P R+    +  +P +        + E+
Sbjct: 1   MKSLHFIFLCMITISLYLFSKSTASSAA-STFYPGRRTFTEVPISPPNHKNPRHRTQCEM 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
               AK   S + +Y AS +   E+VYHIDYHGVTTHP PTP+HP
Sbjct: 61  QAIDAKTKQSTV-KYAASTNDFDEIVYHIDYHGVTTHPTPTPRHP 103

[Close]
BLAST of CmaCh10G003580 vs. TrEMBL
Match: V4UQ65_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010003mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.5e-07
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDEL 60
           M S HF+F  ++    YL S     S   ST  P R+    +  +P +       H++  
Sbjct: 1   MKSLHFIFLCMITISLYLFSKSTASSAA-STFYPGRRTFTEVPISPPN-------HKNPR 60

Query: 61  NRPSAKDISS--NIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           +R  A D  +  +  +Y AS +   E+VYHIDYHGVTTHP PTP+HP
Sbjct: 61  HRTQAIDAKTKQSTVKYAASTNDFDEIVYHIDYHGVTTHPTPTPRHP 99

[Close]
BLAST of CmaCh10G003580 vs. NCBI nr
Match: gi|449457219|ref|XP_004146346.1| (PREDICTED: uncharacterized protein LOC101205829 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 74/108 (68.52%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVHE 60
           M SSHF+FF LLF  FYL S+  L SPP    S GR ARKYLG+ FS+        EVHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           DE NRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of CmaCh10G003580 vs. NCBI nr
Match: gi|731408485|ref|XP_003633204.2| (PREDICTED: uncharacterized protein LOC100852603 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGR---PARKYLGSL---FSNPESEFLKVE 60
           M SS  L   LL   FYLL  H   +   S+     P R+++  L   FSN ++E+ +++
Sbjct: 3   MKSSRILLLCLLTTAFYLLHQHSSIASTSSSSLNFLPGRRHVRELSMSFSNRKNEYQEIQ 62

Query: 61  VHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
             +DE+ +PS     S   E+ +S   + E+VYHIDYHGV THP PTPKHP
Sbjct: 63  DVDDEM-KPSTMQEDSIAVEHRSSSKNLEEIVYHIDYHGVMTHPTPTPKHP 112

[Close]
BLAST of CmaCh10G003580 vs. NCBI nr
Match: gi|590602220|ref|XP_007019696.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-08
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHR----LQSPPLS---TGRPARKYLGSLFSNPESEFLKV 60
           M   HF+   LL  + YL S +     L S P S   TGR + + L     + ++ +LK 
Sbjct: 1   MRPPHFILLCLLTAVMYLWSPYNEFQNLASSPSSIFLTGRRSLRGLKMPLPDHKNRYLKS 60

Query: 61  EVHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           EV  DE  + +AKD  +       S   M +L Y+IDYHGVTTHP PTPKHP
Sbjct: 61  EVAVDEALQSAAKDSMALRYSRSHSNGNMEDLAYYIDYHGVTTHPTPTPKHP 112

[Close]
BLAST of CmaCh10G003580 vs. NCBI nr
Match: gi|297735433|emb|CBI17873.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-08
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 43  FSNPESEFLKVEVHEDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTP 102
           FSN ++E+ +++  +DE+ +PS     S   E+ +S   + E+VYHIDYHGV THP PTP
Sbjct: 3   FSNRKNEYQEIQDVDDEM-KPSTMQEDSIAVEHRSSSKNLEEIVYHIDYHGVMTHPTPTP 62

Query: 103 KHP 106
           KHP
Sbjct: 63  KHP 64

[Close]
BLAST of CmaCh10G003580 vs. NCBI nr
Match: gi|641843077|gb|KDO61979.1| (hypothetical protein CISIN_1g034028mg [Citrus sinensis])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = 1 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDEL 60
           M S HF+F  ++    YL S     S   ST  P R+    +  +P +        + E+
Sbjct: 1   MKSLHFIFLCMITISLYLFSKSTASSAA-STFYPGRRTFTEVPISPPNHKNPRHRTQCEM 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
               AK   S + +Y AS +   E+VYHIDYHGVTTHP PTP+HP
Sbjct: 61  QAIDAKTKQSTV-KYAASTNDFDEIVYHIDYHGVTTHPTPTPRHP 103

The following BLAST results are available for this feature:
BLAST of CmaCh10G003580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh10G003580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD6_CUCSA1.4e-3068.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427550 PE=4 SV=1[more]
A0A061FIL0_THECC5.9e-0840.18Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_035994 PE=4 SV=1[more]
D7SQE2_VITVI5.9e-0847.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00490 PE=4 SV=... [more]
A0A067F3K8_CITSI5.0e-0738.10Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034028mg PE=4 SV=1[more]
V4UQ65_9ROSI8.5e-0737.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010003mg PE=4 SV=1[more]
BLAST of CmaCh10G003580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh10G003580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457219|ref|XP_004146346.1|2.1e-3068.52PREDICTED: uncharacterized protein LOC101205829 [Cucumis sativus][more]
gi|731408485|ref|XP_003633204.2|3.1e-1040.54PREDICTED: uncharacterized protein LOC100852603 [Vitis vinifera][more]
gi|590602220|ref|XP_007019696.1|8.5e-0840.18Uncharacterized protein isoform 2 [Theobroma cacao][more]
gi|297735433|emb|CBI17873.3|8.5e-0847.62unnamed protein product [Vitis vinifera][more]
gi|641843077|gb|KDO61979.1|7.2e-0738.10hypothetical protein CISIN_1g034028mg [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G003580.1CmaCh10G003580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G003580CmoCh10G003860Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G003580CmoCh11G003490Cucurbita moschata (Rifu)cmacmoB068
CmaCh10G003580Lsi06G012280Bottle gourd (USVL1VR-Ls)cmalsiB075
CmaCh10G003580Cp4.1LG04g13360Cucurbita pepo (Zucchini)cmacpeB092
CmaCh10G003580Carg09069Silver-seed gourdcarcmaB0828
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh10G003580CmaCh11G003480Cucurbita maxima (Rimu)cmacmaB072
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G003580Cucumber (Chinese Long) v3cmacucB0060
CmaCh10G003580Cucumber (Chinese Long) v3cmacucB0068
CmaCh10G003580Watermelon (97103) v2cmawmbB081
CmaCh10G003580Wax gourdcmawgoB0077
CmaCh10G003580Cucumber (Gy14) v1cgycmaB0785
CmaCh10G003580Wild cucumber (PI 183967)cmacpiB060
CmaCh10G003580Cucumber (Chinese Long) v2cmacuB058
CmaCh10G003580Melon (DHL92) v3.5.1cmameB067
CmaCh10G003580Watermelon (Charleston Gray)cmawcgB071
CmaCh10G003580Watermelon (97103) v1cmawmB071
CmaCh10G003580Cucurbita pepo (Zucchini)cmacpeB080
CmaCh10G003580Cucumber (Gy14) v2cgybcmaB015
CmaCh10G003580Melon (DHL92) v3.6.1cmamedB070
CmaCh10G003580Silver-seed gourdcarcmaB1091