CmaCh10G003560 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Homeobox associated leucine zipper protein
Location	Cma_Chr10 : 1650067 .. 1651123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTCCAAATCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACCGCCATGGGAGACCAAGATGAGCTCTGCAACACCAGGCTTGGCCTTGCTTTAGGATTTGGCGATTATGTTCCAAAAACGATGCAGAAAGCCAACAAACAGCCCAAGTTCTTGTCTGACCTCTCTTTCTCTCTCATTCCAAGACAGGAATCCGCCATTAACATGCAGCTTCAAGCTAATGAACCCTCCAAGGATTCCTCCTTTGGAATTACTAGAGATCGGTCATCCACTAATTATAATTGCAACGCCATTAGTGGTGGATTAGAAAGAGACAGAAAAAAGCTTAGGCTTTCCCAAGAACAGCTCACTTTGCTTGAAGAAACCTTCAAACTTCACACCACCTTGAATCTGGTAACCCTTAATTATTATTTCCACAACCCATTTCACCCTTTTTCCTTCTTTTCATTTTTCTTAAATACCCATCAAATTTTCTTACGAAAAATTTAAACTTTTCTCTGTTTTTGCATGGATTTGCAGGCCCAGAAACTGGCACTTGCCGATCAATTAAACCTCAAATCTCGACAAGTGGAAGTTTGGTTTCAAAACAGGCGTGCAAGGTTAGTTATGTCGAGGATTATCGGGAGATTAGATATGTTTATAGCTAAATAATATATCTCCATCGATATGAAATTTTTTGGAAAAACACCTGAATGAGAGCTTAAATTCAAAGTGGACAATATCATAGTATTGTAGATGGTCGGGGTTCTTAAATTTTTTAAAAATTTAGCTATGGATTCAAATGTTTTTTTTTATGGAACAGGTCGAAATTGAAACAAACGGAAGTAGATTGTGAGTTCTTGAAGAAATATTGCGAAAGGCTGAAGGAAGAGAATGGAAGGTTGAAGAAAGAGTTGCAGGAATTAAGATCCAGAAAAATTGGAGCTTCACAATTGTATATTCAGCTACCCAAGGCGGCGACGCTCACAATTTGTCCCTCATGCGACAAAACTACGAGGCCGGTCGCCGCCGTGGAGGCCCATTCTCCGCCACAATAATTTTCATTTTTCC

mRNA sequence

TCTTCTCCAAATCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACCGCCATGGGAGACCAAGATGAGCTCTGCAACACCAGGCTTGGCCTTGCTTTAGGATTTGGCGATTATGTTCCAAAAACGATGCAGAAAGCCAACAAACAGCCCAAGTTCTTGTCTGACCTCTCTTTCTCTCTCATTCCAAGACAGGAATCCGCCATTAACATGCAGCTTCAAGCTAATGAACCCTCCAAGGATTCCTCCTTTGGAATTACTAGAGATCGGTCATCCACTAATTATAATTGCAACGCCATTAGTGGTGGATTAGAAAGAGACAGAAAAAAGCTTAGGCTTTCCCAAGAACAGCTCACTTTGCTTGAAGAAACCTTCAAACTTCACACCACCTTGAATCTGGCCCAGAAACTGGCACTTGCCGATCAATTAAACCTCAAATCTCGACAAGTGGAAGTTTGGTTTCAAAACAGGCGTGCAAGGTCGAAATTGAAACAAACGGAAGTAGATTGTGAGTTCTTGAAGAAATATTGCGAAAGGCTGAAGGAAGAGAATGGAAGGTTGAAGAAAGAGTTGCAGGAATTAAGATCCAGAAAAATTGGAGCTTCACAATTGTATATTCAGCTACCCAAGGCGGCGACGCTCACAATTTGTCCCTCATGCGACAAAACTACGAGGCCGGTCGCCGCCGTGGAGGCCCATTCTCCGCCACAATAATTTTCATTTTTCC

Coding sequence (CDS)

ATGGGAGACCAAGATGAGCTCTGCAACACCAGGCTTGGCCTTGCTTTAGGATTTGGCGATTATGTTCCAAAAACGATGCAGAAAGCCAACAAACAGCCCAAGTTCTTGTCTGACCTCTCTTTCTCTCTCATTCCAAGACAGGAATCCGCCATTAACATGCAGCTTCAAGCTAATGAACCCTCCAAGGATTCCTCCTTTGGAATTACTAGAGATCGGTCATCCACTAATTATAATTGCAACGCCATTAGTGGTGGATTAGAAAGAGACAGAAAAAAGCTTAGGCTTTCCCAAGAACAGCTCACTTTGCTTGAAGAAACCTTCAAACTTCACACCACCTTGAATCTGGCCCAGAAACTGGCACTTGCCGATCAATTAAACCTCAAATCTCGACAAGTGGAAGTTTGGTTTCAAAACAGGCGTGCAAGGTCGAAATTGAAACAAACGGAAGTAGATTGTGAGTTCTTGAAGAAATATTGCGAAAGGCTGAAGGAAGAGAATGGAAGGTTGAAGAAAGAGTTGCAGGAATTAAGATCCAGAAAAATTGGAGCTTCACAATTGTATATTCAGCTACCCAAGGCGGCGACGCTCACAATTTGTCCCTCATGCGACAAAACTACGAGGCCGGTCGCCGCCGTGGAGGCCCATTCTCCGCCACAATAA

Protein sequence

MGDQDELCNTRLGLALGFGDYVPKTMQKANKQPKFLSDLSFSLIPRQESAINMQLQANEPSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDKTTRPVAAVEAHSPPQ

Homology

[Close]

BLAST of CmaCh10G003560 vs. Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 1


Query: 84  GGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARS 143
           G  +  RKKLRLS++Q  +LEETFK H+TLN  QKLALA QLNL++RQVEVWFQNRRAR+
Sbjct: 156 GNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRART 215

Query: 144 KLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCD 203
           KLKQTEVDCE+LK+ C+ L EEN RL+KE+ ELR+ K+ +  LY+ +    TLT+CPSC+
Sbjct: 216 KLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKL-SPHLYMHMTPPTTLTMCPSCE 275

Query: 204 KTTRPVAAVEA 215
           + +   A V A
Sbjct: 276 RVSSSAATVTA 285

[Close]

BLAST of CmaCh10G003560 vs. Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 76/120 (63.33%), Postives = 97/120 (80.83%), Query Frame = 1


Query: 85  GLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSK 144
           G +  RKKLRLS+EQ  +LEETFK H+TLN  QK+ALA QLNL++RQVEVWFQNRRAR+K
Sbjct: 156 GDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 215

Query: 145 LKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 204
           LKQTEVDCE+LK+ CE L +EN RL+KE+ ELR+ K+ +  LY+ +    TLT+CPSC++
Sbjct: 216 LKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPSCER 274

[Close]

BLAST of CmaCh10G003560 vs. Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-33
Identity = 73/122 (59.84%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 85  GLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSK 144
           G++  RKKLRLS++Q  +LE++F+ H TLN  QK  LA QL L+ RQVEVWFQNRRAR+K
Sbjct: 76  GIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 135

Query: 145 LKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 204
           LKQTEVDCEFLK+ CE L EEN RL+KE+QELR+ K+ +  LY+ +    TLT+CPSC++
Sbjct: 136 LKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195

Query: 205 TT 207
            +
Sbjct: 196 VS 197

[Close]

BLAST of CmaCh10G003560 vs. Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-33
Identity = 73/122 (59.84%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 85  GLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSK 144
           G++  RKKLRLS++Q  +LE++F+ H TLN  QK  LA QL L+ RQVEVWFQNRRAR+K
Sbjct: 76  GIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 135

Query: 145 LKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 204
           LKQTEVDCEFLK+ CE L EEN RL+KE+QELR+ K+ +  LY+ +    TLT+CPSC++
Sbjct: 136 LKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195

Query: 205 TT 207
            +
Sbjct: 196 VS 197

[Close]

BLAST of CmaCh10G003560 vs. Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-33
Identity = 77/115 (66.96%), Postives = 96/115 (83.48%), Query Frame = 1


Query: 90  RKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSKLKQTE 149
           RKKLRL+++Q  LLE+ FKLH+TLN  QK ALA QLNL+ RQVEVWFQNRRAR+KLKQTE
Sbjct: 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 184

Query: 150 VDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 205
           VDCEFLKK CE L +EN RL+KELQ+L++ K+ +   Y+ +P AATLT+CPSC++
Sbjct: 185 VDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMP-AATLTMCPSCER 237

[Close]

BLAST of CmaCh10G003560 vs. TrEMBL
Match: A0A0A0M012_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433050 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.8e-60
Identity = 154/263 (58.56%), Postives = 176/263 (66.92%), Query Frame = 1


Query: 4   QDELCNTR-LGLALGFGD-YVPKTMQKANKQPKFLSDLSFSLIPRQESAI----NMQLQA 63
           +DE+CN   L L LGFGD YVPK +QK  +Q +    LSF+LIP++E  I    NM++  
Sbjct: 6   EDEICNISWLSLGLGFGDQYVPKKIQKNQQQQQ---QLSFTLIPKEELEITNNNNMEIDD 65

Query: 64  NEPS---------------------------KDSSFGITRDRSS------------TNYN 123
           +E +                           +DSSFG  R  SS            TN+N
Sbjct: 66  DEANSSEEDDDHHLMKRIRSSNNIVNYDHHRQDSSFGSIRRLSSDHYINNSDIVNTTNHN 125

Query: 124 CNAI--SGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWF 183
              I  SG   R+RKKLRLS+EQ TLLEE+FKLHTTLN AQK ALA QLNLK+RQVEVWF
Sbjct: 126 YKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWF 185

Query: 184 QNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATL 220
           QNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKEL ELRS K+GASQLYIQLPKAATL
Sbjct: 186 QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATL 245

[Close]

BLAST of CmaCh10G003560 vs. TrEMBL
Match: V7AYM1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233400g PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 109/206 (52.91%), Postives = 139/206 (67.48%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGFGDYVPKTMQKANKQPKFLSDLSFSLIPRQESAINMQLQANEPSK 62
           + DE C T L L LG G +VPK  ++  K P    DL+F + PR+E  I++  Q      
Sbjct: 2   EDDEPCITTLSLGLGMGGHVPKKDKQKQKLPSL--DLTFDICPRREQMIHVDHQQQLHDD 61

Query: 63  DSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALA 122
            +   +     + N +  + +      RKKL+L++EQ   LE+ FKLHTTLN AQK ALA
Sbjct: 62  KAKGLLCLKHPNENNSPESSNNSNNGTRKKLKLTKEQSATLEDIFKLHTTLNPAQKQALA 121

Query: 123 DQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIG 182
           ++LNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CE+L +EN RLKKELQELR++K+G
Sbjct: 122 EKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKVG 181

Query: 183 ASQLYIQLPKAATLTICPSCDKTTRP 209
              LYIQL KA TL+IC SC+K  +P
Sbjct: 182 PKPLYIQLSKATTLSICSSCEKELKP 205

[Close]

BLAST of CmaCh10G003560 vs. TrEMBL
Match: A0A151SCQ9_CAJCA (Homeobox-leucine zipper protein HAT3 OS=Cajanus cajan GN=KK1_025520 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-46
Identity = 110/203 (54.19%), Postives = 140/203 (68.97%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGFGDYVPKTMQKANKQPKFLSDLSFSLIPRQESA-INMQLQANEPS 62
           + DE C T L L LG G +VPK  +    +P    DL+F L P++E+  +N  + ++ P+
Sbjct: 2   ENDEECITGLCLGLGMGGHVPKRAKHKENKPVKCLDLAFELCPKEEAMNVNHNIDSDNPN 61

Query: 63  KDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLAL 122
           + S+     D S+ N N           RKKLRLS+EQ  +LE +FKLH+TLN  QK AL
Sbjct: 62  EKST---DSDNSNNNNNSGC--------RKKLRLSKEQSAMLENSFKLHSTLNPVQKQAL 121

Query: 123 ADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKI 182
           ADQLNLK+RQVEVWFQNRRAR+KLKQTEVD EFLKK+C+ L +EN RLK+ELQELR+ K+
Sbjct: 122 ADQLNLKARQVEVWFQNRRARTKLKQTEVDREFLKKHCQNLSDENRRLKRELQELRALKV 181

Query: 183 GASQLYIQLPKAATLTICPSCDK 205
           G SQL IQL K  TLT+C SC+K
Sbjct: 182 GPSQLCIQLSKTTTLTMCSSCEK 193

[Close]

BLAST of CmaCh10G003560 vs. TrEMBL
Match: I1MH62_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G168800 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-46
Identity = 115/211 (54.50%), Postives = 142/211 (67.30%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGF-GDYVPKTMQKANKQPKFLSDLSFSLIPR----QESAINMQLQA 62
           + DE C T L L LG  G + PK   K NKQ     DLSF L P+    +E AI++  Q 
Sbjct: 2   EDDEACITSLSLGLGIMGGHAPK---KENKQKVPCLDLSFELCPKGEEEEEEAIDVDQQQ 61

Query: 63  NEPSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQ 122
           +         +      T+ + N  + G    RKKL+L++EQ   LE+ FKLH++LN AQ
Sbjct: 62  HGDKAKGLLCLKHPNDETSPDSNNSNNG---SRKKLKLTKEQSATLEDIFKLHSSLNPAQ 121

Query: 123 KLALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELR 182
           K ALA+QLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CE+L +EN RLKKELQELR
Sbjct: 122 KQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELR 181

Query: 183 SRKIGASQLYIQLPKAATLTICPSCDKTTRP 209
           ++KIG++ LYIQL KA TLTIC SC+K  +P
Sbjct: 182 AQKIGSTPLYIQLSKATTLTICSSCEKLLKP 206

[Close]

BLAST of CmaCh10G003560 vs. TrEMBL
Match: A0A0K2CTK4_SOYBN (Homeodomain/HOMEOBOX transcription factor (Fragment) OS=Glycine max GN=Glyma15g18320.1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-46
Identity = 115/211 (54.50%), Postives = 142/211 (67.30%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGF-GDYVPKTMQKANKQPKFLSDLSFSLIPR----QESAINMQLQA 62
           + DE C T L L LG  G + PK   K NKQ     DLSF L P+    +E AI++  Q 
Sbjct: 2   EDDEACITSLSLGLGIMGGHAPK---KENKQKVPCLDLSFELCPKGEEEEEEAIDVDQQQ 61

Query: 63  NEPSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQ 122
           +         +      T+ + N  + G    RKKL+L++EQ   LE+ FKLH++LN AQ
Sbjct: 62  HGDKAKGLLCLKHPNDETSPDSNNSNNG---SRKKLKLTKEQSATLEDIFKLHSSLNPAQ 121

Query: 123 KLALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELR 182
           K ALA+QLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CE+L +EN RLKKELQELR
Sbjct: 122 KQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELR 181

Query: 183 SRKIGASQLYIQLPKAATLTICPSCDKTTRP 209
           ++KIG++ LYIQL KA TLTIC SC+K  +P
Sbjct: 182 AQKIGSTPLYIQLSKATTLTICSSCEKLLKP 206

[Close]

BLAST of CmaCh10G003560 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-35
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 1


Query: 84  GGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARS 143
           G  +  RKKLRLS++Q  +LEETFK H+TLN  QKLALA QLNL++RQVEVWFQNRRAR+
Sbjct: 156 GNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRART 215

Query: 144 KLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCD 203
           KLKQTEVDCE+LK+ C+ L EEN RL+KE+ ELR+ K+ +  LY+ +    TLT+CPSC+
Sbjct: 216 KLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKL-SPHLYMHMTPPTTLTMCPSCE 275

Query: 204 KTTRPVAAVEA 215
           + +   A V A
Sbjct: 276 RVSSSAATVTA 285

[Close]

BLAST of CmaCh10G003560 vs. TAIR10
Match: AT3G60390.1 (AT3G60390.1 homeobox-leucine zipper protein 3)

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-35
Identity = 76/120 (63.33%), Postives = 97/120 (80.83%), Query Frame = 1


Query: 85  GLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSK 144
           G +  RKKLRLS+EQ  +LEETFK H+TLN  QK+ALA QLNL++RQVEVWFQNRRAR+K
Sbjct: 156 GDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 215

Query: 145 LKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 204
           LKQTEVDCE+LK+ CE L +EN RL+KE+ ELR+ K+ +  LY+ +    TLT+CPSC++
Sbjct: 216 LKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPSCER 274

[Close]

BLAST of CmaCh10G003560 vs. TAIR10
Match: AT4G37790.1 (AT4G37790.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-34
Identity = 77/115 (66.96%), Postives = 96/115 (83.48%), Query Frame = 1


Query: 90  RKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSKLKQTE 149
           RKKLRL+++Q  LLE+ FKLH+TLN  QK ALA QLNL+ RQVEVWFQNRRAR+KLKQTE
Sbjct: 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 184

Query: 150 VDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDK 205
           VDCEFLKK CE L +EN RL+KELQ+L++ K+ +   Y+ +P AATLT+CPSC++
Sbjct: 185 VDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMP-AATLTMCPSCER 237

[Close]

BLAST of CmaCh10G003560 vs. TAIR10
Match: AT4G16780.1 (AT4G16780.1 homeobox protein 2)

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-34
Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 87  ERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWFQNRRARSKLK 146
           +  RKKLRLS++Q  +LEETFK H+TLN  QK ALA QL L++RQVEVWFQNRRAR+KLK
Sbjct: 125 DNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLK 184

Query: 147 QTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATLTICPSCDKTT 206
           QTEVDCEFL++ CE L EEN RL+KE+ ELR+ K+ + Q Y+ +    TLT+CPSC+  +
Sbjct: 185 QTEVDCEFLRRCCENLTEENRRLQKEVTELRALKL-SPQFYMHMSPPTTLTMCPSCEHVS 244

Query: 207 ----RPVAAVEAH 216
               +P AA  AH
Sbjct: 245 VPPPQPQAATSAH 256

[Close]

BLAST of CmaCh10G003560 vs. TAIR10
Match: AT5G47370.1 (AT5G47370.1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein)

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-34
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 1


Query: 61  SKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLA 120
           S D    IT DR  +    +    G E  RKKLRLS++Q   LEETFK H TLN  QKLA
Sbjct: 100 SGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLA 159

Query: 121 LADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRK 180
           LA +LNL +RQVEVWFQNRRAR+KLKQTEVDCE+LK+  E+L EEN RL+KE  ELR+ K
Sbjct: 160 LAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLK 219

Query: 181 IGASQLYIQLPKAATLTICPSCDKTTRPVAAVEAHS 217
           + + Q Y Q+    TL +CPSC++   P ++   H+
Sbjct: 220 L-SPQFYGQMTPPTTLIMCPSCERVGGPSSSNHHHN 254

[Close]

BLAST of CmaCh10G003560 vs. NCBI nr
Match: gi|449466061|ref|XP_004150745.1| (PREDICTED: homeobox-leucine zipper protein HOX18-like [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 4.0e-60
Identity = 154/263 (58.56%), Postives = 176/263 (66.92%), Query Frame = 1


Query: 4   QDELCNTR-LGLALGFGD-YVPKTMQKANKQPKFLSDLSFSLIPRQESAI----NMQLQA 63
           +DE+CN   L L LGFGD YVPK +QK  +Q +    LSF+LIP++E  I    NM++  
Sbjct: 6   EDEICNISWLSLGLGFGDQYVPKKIQKNQQQQQ---QLSFTLIPKEELEITNNNNMEIDD 65

Query: 64  NEPS---------------------------KDSSFGITRDRSS------------TNYN 123
           +E +                           +DSSFG  R  SS            TN+N
Sbjct: 66  DEANSSEEDDDHHLMKRIRSSNNIVNYDHHRQDSSFGSIRRLSSDHYINNSDIVNTTNHN 125

Query: 124 CNAI--SGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVWF 183
              I  SG   R+RKKLRLS+EQ TLLEE+FKLHTTLN AQK ALA QLNLK+RQVEVWF
Sbjct: 126 YKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWF 185

Query: 184 QNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAATL 220
           QNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKEL ELRS K+GASQLYIQLPKAATL
Sbjct: 186 QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATL 245

[Close]

BLAST of CmaCh10G003560 vs. NCBI nr
Match: gi|659107131|ref|XP_008453538.1| (PREDICTED: homeobox-leucine zipper protein HOX18-like [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 7.1e-57
Identity = 151/269 (56.13%), Postives = 174/269 (64.68%), Query Frame = 1


Query: 4   QDELCNTR-LGLALGFGD-YVPKTMQKANKQPKFLSDLSFSLIPR----QESAINMQLQA 63
           +DE+CN   L L LGFGD YVPK +QK   Q +    +SF+LIP+      +  NM++  
Sbjct: 6   EDEICNISWLSLGLGFGDQYVPKKIQKNQHQQQ---QVSFTLIPKEELEITNNNNMEIDD 65

Query: 64  NEPS----------------------------KDSSFGITRDRSS------------TNY 123
           +E +                            +DSSFG  R  SS            TN+
Sbjct: 66  DEVNSSEEDDDHHLMKRIRSNNNIVNYDHHHRQDSSFGSIRRLSSDQYINNNDIVNSTNH 125

Query: 124 NCNAIS--GGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALADQLNLKSRQVEVW 183
           N   IS  G   R+RKKLRLS+EQ TLLEE+FKLHTTLN AQK ALA QLNLK+RQVEVW
Sbjct: 126 NYKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVW 185

Query: 184 FQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIGASQLYIQLPKAAT 220
           FQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKEL ELRS K+GASQLYIQLPKAAT
Sbjct: 186 FQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAAT 245

[Close]

BLAST of CmaCh10G003560 vs. NCBI nr
Match: gi|593330633|ref|XP_007138743.1| (hypothetical protein PHAVU_009G233400g [Phaseolus vulgaris])

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 109/206 (52.91%), Postives = 139/206 (67.48%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGFGDYVPKTMQKANKQPKFLSDLSFSLIPRQESAINMQLQANEPSK 62
           + DE C T L L LG G +VPK  ++  K P    DL+F + PR+E  I++  Q      
Sbjct: 2   EDDEPCITTLSLGLGMGGHVPKKDKQKQKLPSL--DLTFDICPRREQMIHVDHQQQLHDD 61

Query: 63  DSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLALA 122
            +   +     + N +  + +      RKKL+L++EQ   LE+ FKLHTTLN AQK ALA
Sbjct: 62  KAKGLLCLKHPNENNSPESSNNSNNGTRKKLKLTKEQSATLEDIFKLHTTLNPAQKQALA 121

Query: 123 DQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKIG 182
           ++LNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CE+L +EN RLKKELQELR++K+G
Sbjct: 122 EKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKVG 181

Query: 183 ASQLYIQLPKAATLTICPSCDKTTRP 209
              LYIQL KA TL+IC SC+K  +P
Sbjct: 182 PKPLYIQLSKATTLSICSSCEKELKP 205

[Close]

BLAST of CmaCh10G003560 vs. NCBI nr
Match: gi|1012341362|gb|KYP52566.1| (Homeobox-leucine zipper protein HAT3 [Cajanus cajan])

HSP 1 Score: 193.4 bits (490), Expect = 4.3e-46
Identity = 110/203 (54.19%), Postives = 140/203 (68.97%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGFGDYVPKTMQKANKQPKFLSDLSFSLIPRQESA-INMQLQANEPS 62
           + DE C T L L LG G +VPK  +    +P    DL+F L P++E+  +N  + ++ P+
Sbjct: 2   ENDEECITGLCLGLGMGGHVPKRAKHKENKPVKCLDLAFELCPKEEAMNVNHNIDSDNPN 61

Query: 63  KDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKLAL 122
           + S+     D S+ N N           RKKLRLS+EQ  +LE +FKLH+TLN  QK AL
Sbjct: 62  EKST---DSDNSNNNNNSGC--------RKKLRLSKEQSAMLENSFKLHSTLNPVQKQAL 121

Query: 123 ADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSRKI 182
           ADQLNLK+RQVEVWFQNRRAR+KLKQTEVD EFLKK+C+ L +EN RLK+ELQELR+ K+
Sbjct: 122 ADQLNLKARQVEVWFQNRRARTKLKQTEVDREFLKKHCQNLSDENRRLKRELQELRALKV 181

Query: 183 GASQLYIQLPKAATLTICPSCDK 205
           G SQL IQL K  TLT+C SC+K
Sbjct: 182 GPSQLCIQLSKTTTLTMCSSCEK 193

[Close]

BLAST of CmaCh10G003560 vs. NCBI nr
Match: gi|356556274|ref|XP_003546451.1| (PREDICTED: homeobox-leucine zipper protein HOX17-like [Glycine max])

HSP 1 Score: 192.6 bits (488), Expect = 7.3e-46
Identity = 115/211 (54.50%), Postives = 142/211 (67.30%), Query Frame = 1


Query: 3   DQDELCNTRLGLALGF-GDYVPKTMQKANKQPKFLSDLSFSLIPR----QESAINMQLQA 62
           + DE C T L L LG  G + PK   K NKQ     DLSF L P+    +E AI++  Q 
Sbjct: 2   EDDEACITSLSLGLGIMGGHAPK---KENKQKVPCLDLSFELCPKGEEEEEEAIDVDQQQ 61

Query: 63  NEPSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQ 122
           +         +      T+ + N  + G    RKKL+L++EQ   LE+ FKLH++LN AQ
Sbjct: 62  HGDKAKGLLCLKHPNDETSPDSNNSNNG---SRKKLKLTKEQSATLEDIFKLHSSLNPAQ 121

Query: 123 KLALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELR 182
           K ALA+QLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CE+L +EN RLKKELQELR
Sbjct: 122 KQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELR 181

Query: 183 SRKIGASQLYIQLPKAATLTICPSCDKTTRP 209
           ++KIG++ LYIQL KA TLTIC SC+K  +P
Sbjct: 182 AQKIGSTPLYIQLSKATTLTICSSCEKLLKP 206

The following BLAST results are available for this feature:

BLAST of CmaCh10G003560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATHB4_ARATH	2.2e-34	60.31	Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV...	[more]
HAT3_ARATH	1.1e-33	63.33	Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2	[more]
HOX17_ORYSJ	3.2e-33	59.84	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 P...	[more]
HOX17_ORYSI	3.2e-33	59.84	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=...	[more]
HAT22_ARATH	3.2e-33	66.96	Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1	[more]

BLAST of CmaCh10G003560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M012_CUCSA	2.8e-60	58.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433050 PE=4 SV=1	[more]
V7AYM1_PHAVU	1.3e-46	52.91	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233400g PE=4 SV=1	[more]
A0A151SCQ9_CAJCA	3.0e-46	54.19	Homeobox-leucine zipper protein HAT3 OS=Cajanus cajan GN=KK1_025520 PE=4 SV=1	[more]
I1MH62_SOYBN	5.1e-46	54.50	Uncharacterized protein OS=Glycine max GN=GLYMA_15G168800 PE=4 SV=1	[more]
A0A0K2CTK4_SOYBN	5.1e-46	54.50	Homeodomain/HOMEOBOX transcription factor (Fragment) OS=Glycine max GN=Glyma15g1...	[more]

BLAST of CmaCh10G003560 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44910.1	1.2e-35	60.31	homeobox-leucine zipper protein 4	[more]
AT3G60390.1	6.2e-35	63.33	homeobox-leucine zipper protein 3	[more]
AT4G37790.1	1.8e-34	66.96	Homeobox-leucine zipper protein family	[more]
AT4G16780.1	1.8e-34	59.40	homeobox protein 2	[more]
AT5G47370.1	3.1e-34	53.85	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	[more]

BLAST of CmaCh10G003560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466061\|ref\|XP_004150745.1\|	4.0e-60	58.56	PREDICTED: homeobox-leucine zipper protein HOX18-like [Cucumis sativus]	[more]
gi\|659107131\|ref\|XP_008453538.1\|	7.1e-57	56.13	PREDICTED: homeobox-leucine zipper protein HOX18-like [Cucumis melo]	[more]
gi\|593330633\|ref\|XP_007138743.1\|	1.9e-46	52.91	hypothetical protein PHAVU_009G233400g [Phaseolus vulgaris]	[more]
gi\|1012341362\|gb\|KYP52566.1\|	4.3e-46	54.19	Homeobox-leucine zipper protein HAT3 [Cajanus cajan]	[more]
gi\|356556274\|ref\|XP_003546451.1\|	7.3e-46	54.50	PREDICTED: homeobox-leucine zipper protein HOX17-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR003106	Leu_zip_homeo
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003560.1	CmaCh10G003560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 90..144 score: 5.4
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 88..150 score: 4.7
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 86..146 score: 16
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 146..179 score: 4.
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 146..189 score: 5.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 72..147 score: 2.8
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 75..147 score: 5.99
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 121..144 scor
None	No IPR available	unknown	Coil	Coil	coord: 145..179 score: -coord: 86..106 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 63..206 score: 4.0E-67coord: 1..45 score: 4.0
None	No IPR available	PANTHER	PTHR24326:SF177	SUBFAMILY NOT NAMED	coord: 1..45 score: 4.0E-67coord: 63..206 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G003560	Cucsa.281950	Cucumber (Gy14) v1	cgycmaB0785
CmaCh10G003560	Cla018880	Watermelon (97103) v1	cmawmB071
CmaCh10G003560	Csa1G433050	Cucumber (Chinese Long) v2	cmacuB058
CmaCh10G003560	MELO3C017407	Melon (DHL92) v3.5.1	cmameB067
CmaCh10G003560	ClCG06G013890	Watermelon (Charleston Gray)	cmawcgB071
CmaCh10G003560	CSPI01G20770	Wild cucumber (PI 183967)	cmacpiB060
CmaCh10G003560	CmoCh11G003480	Cucurbita moschata (Rifu)	cmacmoB068
CmaCh10G003560	CmoCh10G003850	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G003560	Lsi06G012290	Bottle gourd (USVL1VR-Ls)	cmalsiB075
CmaCh10G003560	Cp4.1LG18g06470	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G003560	Cp4.1LG04g13320	Cucurbita pepo (Zucchini)	cmacpeB092
CmaCh10G003560	MELO3C017407.2	Melon (DHL92) v3.6.1	cmamedB070
CmaCh10G003560	CsaV3_1G032090	Cucumber (Chinese Long) v3	cmacucB0068
CmaCh10G003560	Cla97C06G123330	Watermelon (97103) v2	cmawmbB081
CmaCh10G003560	Bhi02G000149	Wax gourd	cmawgoB0077
CmaCh10G003560	CsGy1G020550	Cucumber (Gy14) v2	cgybcmaB015
CmaCh10G003560	Carg15205	Silver-seed gourd	carcmaB1091
CmaCh10G003560	Carg09070	Silver-seed gourd	carcmaB0828

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh10G003560	CmaCh11G003460	Cucurbita maxima (Rimu)	cmacmaB072

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G003560	Cucumber (Chinese Long) v3	cmacucB0060