CmaCh09G012690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat protein
LocationCma_Chr09 : 8677837 .. 8678208 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAGATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGACAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCTATTGAAAGCATTGCTCTAACCCCAGAGATTGCATCAGTTGAAAGCATTGCTCTCACTCCGAAGGCGGCATGA

mRNA sequence

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAGATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGACAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCTATTGAAAGCATTGCTCTAACCCCAGAGATTGCATCAGTTGAAAGCATTGCTCTCACTCCGAAGGCGGCATGA

Coding sequence (CDS)

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAGATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGACAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCTATTGAAAGCATTGCTCTAACCCCAGAGATTGCATCAGTTGAAAGCATTGCTCTCACTCCGAAGGCGGCATGA

Protein sequence

MAMGKGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLDHQFSFRAFGSHDTQAPIVAPIGSSTDVLVAAPFGSIAQTPEALTPKASTTESIALTPEVASIESIALTPEIASVESIALTPKAA
Homology
[Close]
BLAST of CmaCh09G012690 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 6  GFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 63
          GFKLFHT+FLV+ WQ C KVGATFGD TG +   LD +   RAFGSH TQA  VAP+ S
Sbjct: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 65

[Close]
BLAST of CmaCh09G012690 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 3  MGKGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLD--HQFSFRAFGSHDTQAPIVAPI 62
          M +GFKLF T+FLV  WQ+C KV ATF D TGV+NLD  H FSFR FG      P     
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTP----- 60

Query: 63 GSSTDVLVAAPFGSIAQTPEALTP 85
            +TD  +A+   + A+ P  + P
Sbjct: 61 --NTDGSLASTVNNHAEAPTGIAP 77

[Close]
BLAST of CmaCh09G012690 vs. TrEMBL
Match: A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 45/100 (45.00%), Postives = 55/100 (55.00%), Query Frame = 1 

Query: 1   MAMGKGFKLFHTIFLVIVWQY-CAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIV 60
           M M +GFKLF T+ LV  W+Y CA+VGATF D TGV+N  L+HQFSFRAFG      P V
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61  APIGSST---DVLVAAPFGSIAQTPEALTPKASTTESIAL 95
               +ST    +   AP G      E +  K    +S  L
Sbjct: 61  DGSITSTVKKQIHAEAPAGIAPVGLETMINKEDKVQSYDL 100

[Close]
BLAST of CmaCh09G012690 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 5  KGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 64
          KGFKLFHT+FLV+VWQ C KVGATFGD TG +   +D++F FRAFGSH  QAP VAP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

Query: 65 STDVLVAAPFGSIAQT 79
              ++    G    T
Sbjct: 64 VGGKILVVSHGHETST 79

[Close]
BLAST of CmaCh09G012690 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 5  KGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 64
          KGFKLFHT+FLV+VWQ C KV ATFGD TG +   +D +F FRAFGSH T  P VAP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

Query: 65 STDVLVAAPFGSIAQT 79
              ++    G    T
Sbjct: 64 VGGKILVVSHGHETST 79

[Close]
BLAST of CmaCh09G012690 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 6  GFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 63
          GFKLFHT+FLV+ WQ C KVGATFGD TG +   LD +   RAFGSH TQA  VAP+ S
Sbjct: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 65

[Close]
BLAST of CmaCh09G012690 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 3  MGKGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLD--HQFSFRAFGSHDTQAPIVAPI 62
          M +GFKLF T+FLV  WQ+C KV ATF D TGV+NLD  H FSFR FG      P     
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTP----- 60

Query: 63 GSSTDVLVAAPFGSIAQTPEALTP 85
            +TD  +A+   + A+ P  + P
Sbjct: 61 --NTDGSLASTVNNHAEAPTGIAP 77

[Close]
BLAST of CmaCh09G012690 vs. NCBI nr
Match: gi|700189736|gb|KGN44969.1| (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 45/100 (45.00%), Postives = 55/100 (55.00%), Query Frame = 1 

Query: 1   MAMGKGFKLFHTIFLVIVWQY-CAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIV 60
           M M +GFKLF T+ LV  W+Y CA+VGATF D TGV+N  L+HQFSFRAFG      P V
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61  APIGSST---DVLVAAPFGSIAQTPEALTPKASTTESIAL 95
               +ST    +   AP G      E +  K    +S  L
Sbjct: 61  DGSITSTVKKQIHAEAPAGIAPVGLETMINKEDKVQSYDL 100

The following BLAST results are available for this feature:
BLAST of CmaCh09G012690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K662_CUCSA1.6e-1264.41Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1[more]
A0A0A0K5J0_CUCSA2.5e-1046.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
A0A0A0K7W7_CUCSA1.1e-0845.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1[more]
BLAST of CmaCh09G012690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101536|ref|XP_008451657.1|1.4e-1456.58PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo... [more]
gi|659101534|ref|XP_008451656.1|3.5e-1353.95PREDICTED: cell wall protein AWA1-like [Cucumis melo][more]
gi|700189730|gb|KGN44963.1|2.3e-1264.41Ankyrin repeat protein [Cucumis sativus][more]
gi|700189732|gb|KGN44965.1|3.6e-1046.43hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|700189736|gb|KGN44969.1|1.5e-0845.00hypothetical protein Csa_7G399280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012690.1CmaCh09G012690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012690Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012690Melon (DHL92) v3.5.1cmameB010
CmaCh09G012690Cucurbita pepo (Zucchini)cmacpeB062