CmaCh09G012660 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChloroplast envelope membrane protein
LocationCma_Chr09 : 8647003 .. 8647981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGAATCAAAAGGCAGGTATACATCAGTCACTTTGCTAACTCCATCCGTAAATCACTTACCTTATTAGCTTAGCATTTCTAAATCACTACGTCCTAAACAATAGCATTCCATAGTTGATCTGTCAAATGTTTGCCGACCTCTTCCTCTACCTTGCCCTCGAAAGCCACCACATCTTCTAAACATGGTCATTCATAGTCTTTGGCTTTTAAATCCTTCCAACTTAAGATCCTCCATTGCTTTCTTTTGTCCTTCTGGAACAACTTCTCCTTCTGGTGCCAGAAATTTCATGCTCCAACCACACTCAAATGTTCTTTTGATATGAGAATGTATTTTATCATCATAAACCAGTGATCATAATGTTCATCAAACTTTAGAATTGATATATGGCTGCACAAAACTACTCTCCGCTTCCCTATCGCTCTTCTTATCTTGGAAACTTCTTCTCTTGGAAAGGTTGCTACTTTTCGGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATAGAGAAATCTCTGATCATCGATAGAACAAGATCCATTTTGTATCATATCTAAGGGATTCCTGGGTTCGGGCCGAAGAAGCAATGTCACTCGATCATTATCAAATCGACTGCAACTTTTTTCTGTCCGTGAGGATCCCAAATGTACGTATATCCAGAAATCTTTCTCATTATTACAGAGGATCCTCAAAAAAAAAAAGAATTTGTATCCGAGTATATATTTCGCCTATATAATTTAAGGACACAATAAAAGCTTTTTCTATTCTTTTATTAACTGATTTATGTATAGGATTCCATTCGCTCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCGGTCTTGTTTTCACTTTTCCGGTCATTCTGGACACAATTTTCAAATATTGGATCTTCCGTTATTTAAATTGTGTATCTCCGTCACTACAG

mRNA sequence

ATGCCCGAATCAAAAGGCAGGGATTCCTGGGTTCGGGCCGAAGAAGCAATGTCACTCGATCATTATCAAATCGACTGCAACTTTTTTCTGTCCGTGAGGATCCCAAATGTACGATTCCATTCGCTCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCGGTCTTGTTTTCACTTTTCCGGTCATTCTGGACACAATTTTCAAATATTGGATCTTCCGTTATTTAAATTGTGTATCTCCGTCACTACAG

Coding sequence (CDS)

ATGCCCGAATCAAAAGGCAGGGATTCCTGGGTTCGGGCCGAAGAAGCAATGTCACTCGATCATTATCAAATCGACTGCAACTTTTTTCTGTCCGTGAGGATCCCAAATGTACGATTCCATTCGCTCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCGGTCTTGTTTTCACTTTTCCGGTCATTCTGGACACAATTTTCAAATATTGGATCTTCCGTTATTTAAATTGTGTATCTCCGTCACTACAG

Protein sequence

MPESKGRDSWVRAEEAMSLDHYQIDCNFFLSVRIPNVRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSLQ
Homology
[Close]
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match: CEMA_MANES (Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.0e-25
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGF+HNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 164 IGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 222

[Close]
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match: CEMA_GOSBA (Chloroplast envelope membrane protein OS=Gossypium barbadense GN=cemA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-25
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGS+YKDFGF+HNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSIYKDFGFTHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match: CEMA_GOSHI (Chloroplast envelope membrane protein OS=Gossypium hirsutum GN=cemA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-25
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGS+YKDFGF+HNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSIYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match: CEMA_CUCSA (Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-24
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIIS LV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISSLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match: CEMA_MORIN (Chloroplast envelope membrane protein OS=Morus indica GN=cemA PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGS+YKDFGF+HNDQIISG+V TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 164 IGFHSPHGWELMIGSIYKDFGFAHNDQIISGVVSTFPVILDTIFKYWIFRYLNRVSPSL 222

[Close]
BLAST of CmaCh09G012660 vs. TrEMBL
Match: A0A0S2IDY0_9ROSI (CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. TrEMBL
Match: A0A0S2IGI7_9ROSI (CemA OS=Cucurbita okeechobeensis GN=cemA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. TrEMBL
Match: A0A0S2IE89_9ROSI (CemA OS=Cucurbita argyrosperma subsp. sororia GN=cemA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. TrEMBL
Match: A0A0S2IG02_CUCPE (CemA OS=Cucurbita pepo subsp. fraterna GN=cemA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. TrEMBL
Match: A0A0S2IGS1_CUCPE (CemA OS=Cucurbita pepo var. texana GN=cemA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIG +YKDFGF+H +QI+SGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. NCBI nr
Match: gi|952954401|gb|ALO21765.1| (cemA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. NCBI nr
Match: gi|595645240|gb|AHM88703.1| (chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. NCBI nr
Match: gi|1002164500|ref|YP_009234652.1| (envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGFSHNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

[Close]
BLAST of CmaCh09G012660 vs. NCBI nr
Match: gi|402239009|gb|AFQ39328.1| (chloroplast envelope membrane protein, partial [Fragaria vesca subsp. vesca])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGF+HNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 85  IGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 143

[Close]
BLAST of CmaCh09G012660 vs. NCBI nr
Match: gi|511265869|gb|AGN71976.1| (chloroplast envelope membrane protein [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 37  VRFHSLHGWELMIGSVYKDFGFSHNDQIISGLVFTFPVILDTIFKYWIFRYLNCVSPSL 96
           + FHS HGWELMIGSVYKDFGF+HNDQIISGLV TFPVILDTIFKYWIFRYLN VSPSL
Sbjct: 162 IGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSL 220

The following BLAST results are available for this feature:
BLAST of CmaCh09G012660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CEMA_MANES7.0e-2589.83Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1[more]
CEMA_GOSBA9.1e-2588.14Chloroplast envelope membrane protein OS=Gossypium barbadense GN=cemA PE=3 SV=1[more]
CEMA_GOSHI9.1e-2588.14Chloroplast envelope membrane protein OS=Gossypium hirsutum GN=cemA PE=3 SV=1[more]
CEMA_CUCSA1.5e-2489.83Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1[more]
CEMA_MORIN2.0e-2486.44Chloroplast envelope membrane protein OS=Morus indica GN=cemA PE=3 SV=1[more]
BLAST of CmaCh09G012660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IDY0_9ROSI3.5e-2391.53CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1[more]
A0A0S2IGI7_9ROSI3.5e-2391.53CemA OS=Cucurbita okeechobeensis GN=cemA PE=3 SV=1[more]
A0A0S2IE89_9ROSI3.5e-2391.53CemA OS=Cucurbita argyrosperma subsp. sororia GN=cemA PE=3 SV=1[more]
A0A0S2IG02_CUCPE3.5e-2391.53CemA OS=Cucurbita pepo subsp. fraterna GN=cemA PE=3 SV=1[more]
A0A0S2IGS1_CUCPE3.5e-2391.53CemA OS=Cucurbita pepo var. texana GN=cemA PE=3 SV=1[more]
BLAST of CmaCh09G012660 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00530.11.1e-2381.36ATCG00530.1 CemA-like proton extrusion protein-related[more]
BLAST of CmaCh09G012660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954401|gb|ALO21765.1|5.0e-2391.53cemA (plastid) [Cucurbita argyrosperma][more]
gi|595645240|gb|AHM88703.1|5.0e-2391.53chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria][more]
gi|1002164500|ref|YP_009234652.1|5.0e-2391.53envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333][more]
gi|402239009|gb|AFQ39328.1|1.1e-2289.83chloroplast envelope membrane protein, partial [Fragaria vesca subsp. vesca][more]
gi|511265869|gb|AGN71976.1|1.1e-2289.83chloroplast envelope membrane protein [Dasiphora fruticosa subsp. floribunda][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004282CemA
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019031 viral envelope
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012660.1CmaCh09G012660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 37..95
score: 1.4
NoneNo IPR availablePANTHERPTHR33650FAMILY NOT NAMEDcoord: 39..95
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012660Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012660Melon (DHL92) v3.5.1cmameB010
CmaCh09G012660Cucurbita pepo (Zucchini)cmacpeB062