CmaCh09G012650 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat protein
LocationCma_Chr09 : 8645046 .. 8645516 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGCTTGGCAATATTGTGCGAAAGTGGATGCCACTTTTGAGGATGAAACCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCAACTGTTGCACCAATTGGAAGTAGCACAAAAGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCTCGGAAGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCTAACTCCGGAGGTTGCATCAGTTGAAGACATTGCTCTAACCCCGAAAGCTGCACCAATTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGAACACAAGCATACGAGTAG

mRNA sequence

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGCTTGGCAATATTGTGCGAAAGTGGATGCCACTTTTGAGGATGAAACCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCAACTGTTGCACCAATTGGAAGTAGCACAAAAGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCTCGGAAGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCTAACTCCGGAGGTTGCATCAGTTGAAGACATTGCTCTAACCCCGAAAGCTGCACCAATTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGAACACAAGCATACGAGTAG

Coding sequence (CDS)

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGCTTGGCAATATTGTGCGAAAGTGGATGCCACTTTTGAGGATGAAACCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCAACTGTTGCACCAATTGGAAGTAGCACAAAAGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCTCGGAAGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCAAACTCCGAAGGTTGCGTCAGCTGAAAGCATTGCTCTAACTCCGGAGGTTGCATCAGTTGAAGACATTGCTCTAACCCCGAAAGCTGCACCAATTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGAACACAAGCATACGAGTAG

Protein sequence

MAMGKGFKLFHTLFLVIAWQYCAKVDATFEDETGVVNLDHQFSFRAFGSHDTQAPTVAPIGSSTKVLVAAPFGSIAQTPEALTSEVASAESIAQTPKVASAESIAQTPKVASAESIALTPEVASVEDIALTPKAAPIGSTQTTTITPIGSRTQAYE
Homology
[Close]
BLAST of CmaCh09G012650 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-12
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 1 

Query: 3  MGKGFKLFHTLFLVIAWQYCAKVDATFEDETGVVNLD--HQFSFRAFG------------ 62
          M +GFKLF TLFLV AWQ+C KVDATF D TGVVNLD  H FSFR FG            
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 -----SHDTQAPT-VAPIGSSTKV 67
               ++  +APT +AP+G  T +
Sbjct: 61 LASTVNNHAEAPTGIAPVGLDTPI 84

[Close]
BLAST of CmaCh09G012650 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-10
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 1 

Query: 6   GFKLFHTLFLVIAWQYCAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTVAPIGS- 65
           GFKLFHTLFLV+AWQ C KV ATF D TG V   LD +   RAFGSH TQA  VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  STKVLVAAPFGSIAQTPEALTSEVASAESIAQTPKVASAESIAQTPKVASAESIALTPEV 125
             KVLV      ++Q  E  T++ A +  ++   K     +      ++S   I+     
Sbjct: 67  GGKVLV------VSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGA 123

[Close]
BLAST of CmaCh09G012650 vs. TrEMBL
Match: A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 1 

Query: 1  MAMGKGFKLFHTLFLVIAWQY-CAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTV 60
          M M +GFKLF TL LV AW+Y CA+V ATF D TGVVN  L+HQFSFRAFG      P V
Sbjct: 1  MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61 APIGSST---KVLVAAPFG 74
              +ST   ++   AP G
Sbjct: 61 DGSITSTVKKQIHAEAPAG 79

[Close]
BLAST of CmaCh09G012650 vs. TrEMBL
Match: A0A0A0K5G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-06
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 1 

Query: 1  MAMGKGFKLFHTLFLVIAWQYCAKVDATFEDETGVVNLDHQFSFRAFGSHDT-------- 60
          M++  G KLFHT+ L++AWQYCAKVDATF+D TG  +    F+  +FGS           
Sbjct: 1  MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFFD----FNLGSFGSGGAGIMGGTKN 60

Query: 61 ---------QAPTVAPIGSST 65
                    AP +AP+G  T
Sbjct: 61 GGSPANAPEMAPGIAPVGFDT 77

[Close]
BLAST of CmaCh09G012650 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 5  KGFKLFHTLFLVIAWQYCAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTVAPIGS 64
          KGFKLFHTLFLV+ WQ C KVDATF D TG V   +D +F FRAFGSH T  P VAP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

Query: 65 STKVLVAAPFGSIAQTPEALTSEVAS 89
              ++    G    T +   S V S
Sbjct: 64 VGGKILVVSHGHETSTAKGAGSVVIS 89

[Close]
BLAST of CmaCh09G012650 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 5  KGFKLFHTLFLVIAWQYCAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTVAPIGS 64
          KGFKLFHTLFLV+ WQ C KV ATF D TG V   +D++F FRAFGSH  QAP VAP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

Query: 65 STKVLVAAPFGSIAQTPEALTSEVAS 89
              ++    G    T +   S V S
Sbjct: 64 VGGKILVVSHGHETSTAKGAGSVVVS 89

[Close]
BLAST of CmaCh09G012650 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 1 

Query: 3  MGKGFKLFHTLFLVIAWQYCAKVDATFEDETGVVNLD--HQFSFRAFG------------ 62
          M +GFKLF TLFLV AWQ+C KVDATF D TGVVNLD  H FSFR FG            
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 -----SHDTQAPT-VAPIGSSTKV 67
               ++  +APT +AP+G  T +
Sbjct: 61 LASTVNNHAEAPTGIAPVGLDTPI 84

[Close]
BLAST of CmaCh09G012650 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-10
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 1 

Query: 6   GFKLFHTLFLVIAWQYCAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTVAPIGS- 65
           GFKLFHTLFLV+AWQ C KV ATF D TG V   LD +   RAFGSH TQA  VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  STKVLVAAPFGSIAQTPEALTSEVASAESIAQTPKVASAESIAQTPKVASAESIALTPEV 125
             KVLV      ++Q  E  T++ A +  ++   K     +      ++S   I+     
Sbjct: 67  GGKVLV------VSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGA 123

[Close]
BLAST of CmaCh09G012650 vs. NCBI nr
Match: gi|700189736|gb|KGN44969.1| (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 1 

Query: 1  MAMGKGFKLFHTLFLVIAWQY-CAKVDATFEDETGVVN--LDHQFSFRAFGSHDTQAPTV 60
          M M +GFKLF TL LV AW+Y CA+V ATF D TGVVN  L+HQFSFRAFG      P V
Sbjct: 1  MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61 APIGSST---KVLVAAPFG 74
              +ST   ++   AP G
Sbjct: 61 DGSITSTVKKQIHAEAPAG 79

The following BLAST results are available for this feature:
BLAST of CmaCh09G012650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5J0_CUCSA5.9e-1251.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
A0A0A0K662_CUCSA5.5e-1042.28Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1[more]
A0A0A0K7W7_CUCSA2.7e-0954.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1[more]
A0A0A0K5G8_CUCSA8.2e-0640.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398120 PE=4 SV=1[more]
BLAST of CmaCh09G012650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101534|ref|XP_008451656.1|7.6e-1352.33PREDICTED: cell wall protein AWA1-like [Cucumis melo][more]
gi|659101536|ref|XP_008451657.1|9.9e-1352.33PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo... [more]
gi|700189732|gb|KGN44965.1|8.4e-1251.19hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|700189730|gb|KGN44963.1|7.9e-1042.28Ankyrin repeat protein [Cucumis sativus][more]
gi|700189736|gb|KGN44969.1|3.9e-0954.43hypothetical protein Csa_7G399280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012650.1CmaCh09G012650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012650Cucurbita pepo (Zucchini)cmacpeB062
CmaCh09G012650Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012650Melon (DHL92) v3.5.1cmameB010