CmaCh09G012630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Myosin light chain kinase, smooth muscle
Location	Cma_Chr09 : 8587786 .. 8588849 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAGTATTGCTTAAATCCCAACCATTGACCAATTGGAAGCATTGCTTAAATCCCAAACATTGCACCAATTGGAAGCATTGCTCAAACCCCAACCATTGCACCCATTGGAAGTAGCACAAAAGTGGGAGAAGTGGGAGAGTAGTATTGCTATGCATAGAGGTTTCTTTGGCTATTAACAAAGTAAAACCTAAGCTAAGCTAAATCATTATTTTTTTTTGACAAATTCATTATTTCTATATTTTTTTCAGAAATGAAATGA

mRNA sequence

ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAAAATGAAATGA

Coding sequence (CDS)

ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAAAATGAAATGA

Protein sequence

MAMDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLDHQFSFRAFGLQDTQASTVAPIGSSTEVPMATPFGSIAQTPEALTPEGALVGSIAQTPEAQASEGASVVRIAQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPEGASVGSIAQTPEGASVERITLEAAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTIAPIGSLAQISTIAPIGKMK

Homology

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BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 65/184 (35.33%), Postives = 90/184 (48.91%), Query Frame = 1


Query: 6   GFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS- 65
           GFKLFHTLFLV+ WQCC KVGATFGDV+G V   LD +   RAFG   TQAS VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVPMATPFGSIAQTPEALTPEGALVGS---IAQTPEAQASEGASVVRIA 125
                      E+  A   GS+  +    T   A  GS   I+   E     GAS V ++
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 QTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPE 175
              +   + G+S        +    +G+S   +++  +   + G+S   ++   E  A  
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSSIIVSRGSKTGVNGGSSTVAVSTGHEVSAKS 186

[Close]

BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 3  MDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLD--HQFSFRAFGLQDTQASTVAPI 62
          M +GFKLF TLFLV  WQ CVKV ATF DV+GVVNLD  H FSFR FG           I
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGW--------PRI 60

Query: 63 GS-STEVPMATPFGSIAQTPEALTPEG 87
          G+ +T+  +A+   + A+ P  + P G
Sbjct: 61 GTPNTDGSLASTVNNHAEAPTGIAPVG 79

[Close]

BLAST of CmaCh09G012630 vs. TrEMBL
Match: B3ZXY5_BACCE (Uncharacterized protein OS=Bacillus cereus 03BB108 GN=AK40_5664 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 194 APFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTI 253
           AP G +A    VAPVG +A +  + PVG +A +  +AP+G +A +  +AP+G +A +  +
Sbjct: 14  APVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPV 73

Query: 254 APIGSLAQISTIAPIG 270
           AP+G +A +  +AP+G
Sbjct: 74  APVGPVAPVGPVAPVG 89

[Close]

BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0T8KLC5_STREE (LPXTG-motif cell wall anchor domain protein OS=Streptococcus pneumoniae GN=ERS021634_07284 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1


Query: 168 APEG--ASVGSIAQTPEGASVERITLEAAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQ 227
           AP G  A VG +A     A V  +    AP G +     VAPVG +A +  + PVG +A 
Sbjct: 20  APVGPVAPVGPVAPVGPVAPVGPV----APVGPVGPVKPVAPVGPVAPVGPVAPVGPVAP 79

Query: 228 ISTIAPIGSIAQISTIAPIGSIAQISTIAPIGSLAQISTIAPIG 270
           +  +AP+G +A +  +AP+G +A +  +AP+G +A +  +AP+G
Sbjct: 80  VGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVG 119

[Close]

BLAST of CmaCh09G012630 vs. TrEMBL
Match: W4E1X0_9BACI (Collagen-like protein (Fragment) OS=Bacillus weihenstephanensis FSL R5-860 GN=C175_23347 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 194 APFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTI 253
           AP G +A    VAPVG +A +  + PVG +  +  +AP+G +A +  +AP+G +A +  +
Sbjct: 7   APVGPVAPVGPVAPVGPVAPVGPVAPVGPVGPVKPVAPVGPVAPVGPVAPVGPVAPVGPV 66

Query: 254 APIGSLAQISTIAPIG 270
           AP+G +A +  +AP+G
Sbjct: 67  APVGPVAPVGPVAPVG 82

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BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 65/185 (35.14%), Postives = 92/185 (49.73%), Query Frame = 1


Query: 5   KGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS 64
           KGFKLFHTLFLV+VWQCC KVGATFGD +G V   +D++F FRAFG    QA  VAP+ S
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

Query: 65  ----------STEVPMATPFGSIAQTPEALT---PEGALVGSIAQTPEAQASEGASVVRI 124
                       E   A   GS+  +    T     G  V +I+   E     G S V +
Sbjct: 64  VGGKILVVSHGHETSTAKGAGSVVVSHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIV 123

Query: 125 AQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAP 175
           ++  +     G+S+ +++Q  E       S+  +A+  +   + G S+  ++   E  A 
Sbjct: 124 SRGGKTGVKNGSSLVAVSQGQEITKKGSGSI-IVARGSKTGVNGGGSIVAVSSGHEVSAK 183

[Close]

BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 65/184 (35.33%), Postives = 90/184 (48.91%), Query Frame = 1


Query: 6   GFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS- 65
           GFKLFHTLFLV+ WQCC KVGATFGDV+G V   LD +   RAFG   TQAS VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVPMATPFGSIAQTPEALTPEGALVGS---IAQTPEAQASEGASVVRIA 125
                      E+  A   GS+  +    T   A  GS   I+   E     GAS V ++
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 QTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPE 175
              +   + G+S        +    +G+S   +++  +   + G+S   ++   E  A  
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSSIIVSRGSKTGVNGGSSTVAVSTGHEVSAKS 186

[Close]

BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 3  MDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLD--HQFSFRAFGLQDTQASTVAPI 62
          M +GFKLF TLFLV  WQ CVKV ATF DV+GVVNLD  H FSFR FG           I
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGW--------PRI 60

Query: 63 GS-STEVPMATPFGSIAQTPEALTPEG 87
          G+ +T+  +A+   + A+ P  + P G
Sbjct: 61 GTPNTDGSLASTVNNHAEAPTGIAPVG 79

[Close]

BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 4.0e-09
Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 1


Query: 5   KGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS 64
           KGFKLFHTLFLV+VWQCC KV ATFGD +G V   +D +F FRAFG   T    VAP+ S
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

Query: 65  ----------STEVPMATPFGSIAQTPEALT---PEGALVGSIAQTPEAQASEGASVVRI 124
                       E   A   GS+  +    T     G  V +I+   E     G S V +
Sbjct: 64  VGGKILVVSHGHETSTAKGAGSVVISHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIV 123

Query: 125 AQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAP 175
           ++  +     G+S+ +++Q  E       S+  +A+  +   + G S+  ++   E  A 
Sbjct: 124 SRGGKTGVKNGSSLVAVSQGQEITKKGSGSI-IVARGSKTGVNGGGSIVAVSSGHEVNAK 183

[Close]

BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|928460402|gb|KPD09677.1| (hypothetical protein AM501_03375, partial [Aneurinibacillus migulanus])

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 193 AAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQIST 252
           AAP G +A    VAPVG +A +  + PVG +A +  +AP+G +A +  +AP+G +A +  
Sbjct: 23  AAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGP 82

Query: 253 IAPIGSLAQISTIAPIG 270
           +AP+G +A +  +AP+G
Sbjct: 83  VAPVGPVAPVGPVAPVG 99

The following BLAST results are available for this feature:

BLAST of CmaCh09G012630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K662_CUCSA	7.3e-10	35.33	Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1	[more]
A0A0A0K5J0_CUCSA	1.2e-09	49.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1	[more]
B3ZXY5_BACCE	1.5e-07	38.16	Uncharacterized protein OS=Bacillus cereus 03BB108 GN=AK40_5664 PE=4 SV=1	[more]
A0A0T8KLC5_STREE	3.4e-07	35.58	LPXTG-motif cell wall anchor domain protein OS=Streptococcus pneumoniae GN=ERS02...	[more]
W4E1X0_9BACI	4.4e-07	36.84	Collagen-like protein (Fragment) OS=Bacillus weihenstephanensis FSL R5-860 GN=C1...	[more]

BLAST of CmaCh09G012630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101536\|ref\|XP_008451657.1\|	1.2e-10	35.14	PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo...	[more]
gi\|700189730\|gb\|KGN44963.1\|	1.0e-09	35.33	Ankyrin repeat protein [Cucumis sativus]	[more]
gi\|700189732\|gb\|KGN44965.1\|	1.8e-09	49.43	hypothetical protein Csa_7G398750 [Cucumis sativus]	[more]
gi\|659101534\|ref\|XP_008451656.1\|	4.0e-09	34.05	PREDICTED: cell wall protein AWA1-like [Cucumis melo]	[more]
gi\|928460402\|gb\|KPD09677.1\|	9.8e-08	38.96	hypothetical protein AM501_03375, partial [Aneurinibacillus migulanus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012630.1	CmaCh09G012630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012630	Cucurbita moschata (Rifu)	cmacmoB028
CmaCh09G012630	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012630	Cucurbita pepo (Zucchini)	cmacpeB062