CmaCh09G012630 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMyosin light chain kinase, smooth muscle
LocationCma_Chr09 : 8587786 .. 8588849 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAGTATTGCTTAAATCCCAACCATTGACCAATTGGAAGCATTGCTTAAATCCCAAACATTGCACCAATTGGAAGCATTGCTCAAACCCCAACCATTGCACCCATTGGAAGTAGCACAAAAGTGGGAGAAGTGGGAGAGTAGTATTGCTATGCATAGAGGTTTCTTTGGCTATTAACAAAGTAAAACCTAAGCTAAGCTAAATCATTATTTTTTTTTGACAAATTCATTATTTCTATATTTTTTTCAGAAATGAAATGA

mRNA sequence

ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAAAATGAAATGA

Coding sequence (CDS)

ATGGCCATGGACAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGATTGTTTGGCAATGTTGTGTAAAGGTGGGTGCTACTTTTGGCGATGTCAGCGGTGTCGTAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATTACAAGACACACAAGCCTCAACGGTTGCACCGATTGGAAGTAGTACAGAAGTCCCGATGGCTACACCATTTGGAAGCATTGCTCAAACTCCAGAGGCTCTAACTCCAGAGGGTGCATTGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGTAAGAATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCCGGAGGCTCAAGCCTCGGAGGGTGCATCGGTTGGAAGCATTGCTCAAACTCTGGAGGCTCAAGCCTCAGAGGGTGCATCGGTTGGAAACATTGCTCAAACTCCGGAAGCTCAAGCCCCGGAGGGTGCATCGGTTGGAAGTATTGCTCAAACCCCGGAGGGTGCATCGGTTGAGAGAATTACATTGGAGGCTGCACCATTTGGGAGAATTGCGCTACCACTAGAGGTTGCACCAGTTGGAAGCATTGCTCAAATCCCAACCATTCCACCAGTTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCATTGCTCAAATCTCAACCATTGCACCAATTGGAAGCCTGGCTCAAATCTCAACCATTGCACCAATTGGAAAAATGAAATGA

Protein sequence

MAMDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLDHQFSFRAFGLQDTQASTVAPIGSSTEVPMATPFGSIAQTPEALTPEGALVGSIAQTPEAQASEGASVVRIAQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPEGASVGSIAQTPEGASVERITLEAAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTIAPIGSLAQISTIAPIGKMK
Homology
[Close]
BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 65/184 (35.33%), Postives = 90/184 (48.91%), Query Frame = 1 

Query: 6   GFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS- 65
           GFKLFHTLFLV+ WQCC KVGATFGDV+G V   LD +   RAFG   TQAS VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVPMATPFGSIAQTPEALTPEGALVGS---IAQTPEAQASEGASVVRIA 125
                      E+  A   GS+  +    T   A  GS   I+   E     GAS V ++
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 QTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPE 175
              +   + G+S        +    +G+S   +++  +   + G+S   ++   E  A  
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSSIIVSRGSKTGVNGGSSTVAVSTGHEVSAKS 186

[Close]
BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 3  MDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLD--HQFSFRAFGLQDTQASTVAPI 62
          M +GFKLF TLFLV  WQ CVKV ATF DV+GVVNLD  H FSFR FG           I
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGW--------PRI 60

Query: 63 GS-STEVPMATPFGSIAQTPEALTPEG 87
          G+ +T+  +A+   + A+ P  + P G
Sbjct: 61 GTPNTDGSLASTVNNHAEAPTGIAPVG 79

[Close]
BLAST of CmaCh09G012630 vs. TrEMBL
Match: B3ZXY5_BACCE (Uncharacterized protein OS=Bacillus cereus 03BB108 GN=AK40_5664 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 194 APFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTI 253
           AP G +A    VAPVG +A +  + PVG +A +  +AP+G +A +  +AP+G +A +  +
Sbjct: 14  APVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPV 73

Query: 254 APIGSLAQISTIAPIG 270
           AP+G +A +  +AP+G
Sbjct: 74  APVGPVAPVGPVAPVG 89

[Close]
BLAST of CmaCh09G012630 vs. TrEMBL
Match: A0A0T8KLC5_STREE (LPXTG-motif cell wall anchor domain protein OS=Streptococcus pneumoniae GN=ERS021634_07284 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1 

Query: 168 APEG--ASVGSIAQTPEGASVERITLEAAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQ 227
           AP G  A VG +A     A V  +    AP G +     VAPVG +A +  + PVG +A 
Sbjct: 20  APVGPVAPVGPVAPVGPVAPVGPV----APVGPVGPVKPVAPVGPVAPVGPVAPVGPVAP 79

Query: 228 ISTIAPIGSIAQISTIAPIGSIAQISTIAPIGSLAQISTIAPIG 270
           +  +AP+G +A +  +AP+G +A +  +AP+G +A +  +AP+G
Sbjct: 80  VGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVG 119

[Close]
BLAST of CmaCh09G012630 vs. TrEMBL
Match: W4E1X0_9BACI (Collagen-like protein (Fragment) OS=Bacillus weihenstephanensis FSL R5-860 GN=C175_23347 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 194 APFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQISTI 253
           AP G +A    VAPVG +A +  + PVG +  +  +AP+G +A +  +AP+G +A +  +
Sbjct: 7   APVGPVAPVGPVAPVGPVAPVGPVAPVGPVGPVKPVAPVGPVAPVGPVAPVGPVAPVGPV 66

Query: 254 APIGSLAQISTIAPIG 270
           AP+G +A +  +AP+G
Sbjct: 67  APVGPVAPVGPVAPVG 82

[Close]
BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 65/185 (35.14%), Postives = 92/185 (49.73%), Query Frame = 1 

Query: 5   KGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS 64
           KGFKLFHTLFLV+VWQCC KVGATFGD +G V   +D++F FRAFG    QA  VAP+ S
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

Query: 65  ----------STEVPMATPFGSIAQTPEALT---PEGALVGSIAQTPEAQASEGASVVRI 124
                       E   A   GS+  +    T     G  V +I+   E     G S V +
Sbjct: 64  VGGKILVVSHGHETSTAKGAGSVVVSHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIV 123

Query: 125 AQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAP 175
           ++  +     G+S+ +++Q  E       S+  +A+  +   + G S+  ++   E  A 
Sbjct: 124 SRGGKTGVKNGSSLVAVSQGQEITKKGSGSI-IVARGSKTGVNGGGSIVAVSSGHEVSAK 183

[Close]
BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 65/184 (35.33%), Postives = 90/184 (48.91%), Query Frame = 1 

Query: 6   GFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS- 65
           GFKLFHTLFLV+ WQCC KVGATFGDV+G V   LD +   RAFG   TQAS VAP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVPMATPFGSIAQTPEALTPEGALVGS---IAQTPEAQASEGASVVRIA 125
                      E+  A   GS+  +    T   A  GS   I+   E     GAS V ++
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 QTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAPE 175
              +   + G+S        +    +G+S   +++  +   + G+S   ++   E  A  
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSSIIVSRGSKTGVNGGSSTVAVSTGHEVSAKS 186

[Close]
BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 3  MDKGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVNLD--HQFSFRAFGLQDTQASTVAPI 62
          M +GFKLF TLFLV  WQ CVKV ATF DV+GVVNLD  H FSFR FG           I
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGW--------PRI 60

Query: 63 GS-STEVPMATPFGSIAQTPEALTPEG 87
          G+ +T+  +A+   + A+ P  + P G
Sbjct: 61 GTPNTDGSLASTVNNHAEAPTGIAPVG 79

[Close]
BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 4.0e-09
Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 1 

Query: 5   KGFKLFHTLFLVIVWQCCVKVGATFGDVSGVVN--LDHQFSFRAFGLQDTQASTVAPIGS 64
           KGFKLFHTLFLV+VWQCC KV ATFGD +G V   +D +F FRAFG   T    VAP+ S
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

Query: 65  ----------STEVPMATPFGSIAQTPEALT---PEGALVGSIAQTPEAQASEGASVVRI 124
                       E   A   GS+  +    T     G  V +I+   E     G S V +
Sbjct: 64  VGGKILVVSHGHETSTAKGAGSVVISHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIV 123

Query: 125 AQTPEAQASEGASVGSIAQTPEAQASEGASVGSIAQTLEAQASEGASVGNIAQTPEAQAP 175
           ++  +     G+S+ +++Q  E       S+  +A+  +   + G S+  ++   E  A 
Sbjct: 124 SRGGKTGVKNGSSLVAVSQGQEITKKGSGSI-IVARGSKTGVNGGGSIVAVSSGHEVNAK 183

[Close]
BLAST of CmaCh09G012630 vs. NCBI nr
Match: gi|928460402|gb|KPD09677.1| (hypothetical protein AM501_03375, partial [Aneurinibacillus migulanus])

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1 

Query: 193 AAPFGRIALPLEVAPVGSIAQIPTIPPVGSIAQISTIAPIGSIAQISTIAPIGSIAQIST 252
           AAP G +A    VAPVG +A +  + PVG +A +  +AP+G +A +  +AP+G +A +  
Sbjct: 23  AAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGPVAPVGP 82

Query: 253 IAPIGSLAQISTIAPIG 270
           +AP+G +A +  +AP+G
Sbjct: 83  VAPVGPVAPVGPVAPVG 99

The following BLAST results are available for this feature:
BLAST of CmaCh09G012630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K662_CUCSA7.3e-1035.33Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1[more]
A0A0A0K5J0_CUCSA1.2e-0949.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
B3ZXY5_BACCE1.5e-0738.16Uncharacterized protein OS=Bacillus cereus 03BB108 GN=AK40_5664 PE=4 SV=1[more]
A0A0T8KLC5_STREE3.4e-0735.58LPXTG-motif cell wall anchor domain protein OS=Streptococcus pneumoniae GN=ERS02... [more]
W4E1X0_9BACI4.4e-0736.84Collagen-like protein (Fragment) OS=Bacillus weihenstephanensis FSL R5-860 GN=C1... [more]
BLAST of CmaCh09G012630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101536|ref|XP_008451657.1|1.2e-1035.14PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo... [more]
gi|700189730|gb|KGN44963.1|1.0e-0935.33Ankyrin repeat protein [Cucumis sativus][more]
gi|700189732|gb|KGN44965.1|1.8e-0949.43hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|659101534|ref|XP_008451656.1|4.0e-0934.05PREDICTED: cell wall protein AWA1-like [Cucumis melo][more]
gi|928460402|gb|KPD09677.1|9.8e-0838.96hypothetical protein AM501_03375, partial [Aneurinibacillus migulanus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012630.1CmaCh09G012630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012630Cucurbita pepo (Zucchini)cmacpeB062
CmaCh09G012630Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012630Melon (DHL92) v3.5.1cmameB010