CmaCh09G012620 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat protein
LocationCma_Chr09 : 8575615 .. 8576010 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGGTTGCTTGGCAATGTTGTGCGAAAGTAGGTGCCACTTTTGGCGATGTCACTGGTGCTGTAAATCTCGATGATCAATTTTCATTTCGTGCCACTGGATCACATGACACAAAAGCCCCAGTGACTGCTCCAATTGGAAGTAGCACAGAAGTCCAAGTGGATGCACCATTTGGAAGCATCGCTCAAACTCCAGAGGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAGCATTGCTGAAACTCCAACCATGACACCAATGGGAAGTAGCACACAAGCATGA

mRNA sequence

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGGTTGCTTGGCAATGTTGTGCGAAAGTAGGTGCCACTTTTGGCGATGTCACTGGTGCTGTAAATCTCGATGATCAATTTTCATTTCGTGCCACTGGATCACATGACACAAAAGCCCCAGTGACTGCTCCAATTGGAAGTAGCACAGAAGTCCAAGTGGATGCACCATTTGGAAGCATCGCTCAAACTCCAGAGGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAGCATTGCTGAAACTCCAACCATGACACCAATGGGAAGTAGCACACAAGCATGA

Coding sequence (CDS)

ATGGCCATGGGCAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGGTTGCTTGGCAATGTTGTGCGAAAGTAGGTGCCACTTTTGGCGATGTCACTGGTGCTGTAAATCTCGATGATCAATTTTCATTTCGTGCCACTGGATCACATGACACAAAAGCCCCAGTGACTGCTCCAATTGGAAGTAGCACAGAAGTCCAAGTGGATGCACCATTTGGAAGCATCGCTCAAACTCCAGAGGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAACATTGCTCTAACCCCAGAGGGTGCATCGGTTGGAAGCATTGCTGAAACTCCAACCATGACACCAATGGGAAGTAGCACACAAGCATGA

Protein sequence

MAMGKGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVNLDDQFSFRATGSHDTKAPVTAPIGSSTEVQVDAPFGSIAQTPEALTPEGASVGNIALTPEGASVGNIALTPEGASVGSIAETPTMTPMGSSTQA
Homology
[Close]
BLAST of CmaCh09G012620 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 53/150 (35.33%), Postives = 74/150 (49.33%), Query Frame = 1 

Query: 6   GFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS- 65
           GFKLFHTLFLV+AWQCC KVGATFGDVTG+V   LD +   RA GSH T+A   AP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVQVDAPFGSIAQTPEALTPEGASVGNIALTPEGASV------------ 125
                      E+      GS+  +    T   A+ G++     G  +            
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 --GNIALTPEGASVGSIAETPTMTPMGSST 130
             G   +    +S+ ++++   +T  GSS+
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSS 156

[Close]
BLAST of CmaCh09G012620 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 39/74 (52.70%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 3  MGKGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVNLD--DQFSFRATGSHDTKAPVT-AP 62
          M +GFKLF TLFLV AWQ C KV ATF DVTG VNLD    FSFR  G      P T   
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 IGSSTEVQVDAPFG 74
          + S+     +AP G
Sbjct: 61 LASTVNNHAEAPTG 74

[Close]
BLAST of CmaCh09G012620 vs. TrEMBL
Match: A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 1  MAMGKGFKLFHTLFLVVAWQ-CCAKVGATFGDVTGAVN--LDDQFSFRATG-SHDTKAPV 60
          M M +GFKLF TL LV AW+ CCA+VGATF D TG VN  L+ QFSFRA G  H     V
Sbjct: 1  MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61 TAPIGSSTEVQVDAPFGSIAQTPEALTPEG 87
             I S+ + Q+       A+ P  + P G
Sbjct: 61 DGSITSTVKKQIH------AEAPAGIAPVG 84

[Close]
BLAST of CmaCh09G012620 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-14
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 63
          KGFKLFHTLFLV+ WQCC KVGATFGD TG+V   +D++F FRA GSH  +AP  AP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

[Close]
BLAST of CmaCh09G012620 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 63
          KGFKLFHTLFLV+ WQCC KV ATFGD TG+V   +D +F FRA GSH T  P  AP+ S
Sbjct: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

[Close]
BLAST of CmaCh09G012620 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 53/150 (35.33%), Postives = 74/150 (49.33%), Query Frame = 1 

Query: 6   GFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS- 65
           GFKLFHTLFLV+AWQCC KVGATFGDVTG+V   LD +   RA GSH T+A   AP+ S 
Sbjct: 7   GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66

Query: 66  ---------STEVQVDAPFGSIAQTPEALTPEGASVGNIALTPEGASV------------ 125
                      E+      GS+  +    T   A+ G++     G  +            
Sbjct: 67  GGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVS 126

Query: 126 --GNIALTPEGASVGSIAETPTMTPMGSST 130
             G   +    +S+ ++++   +T  GSS+
Sbjct: 127 HGGKTGVNNGSSSLVAVSQGQEITKKGSSS 156

[Close]
BLAST of CmaCh09G012620 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 39/74 (52.70%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 3  MGKGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVNLD--DQFSFRATGSHDTKAPVT-AP 62
          M +GFKLF TLFLV AWQ C KV ATF DVTG VNLD    FSFR  G      P T   
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 IGSSTEVQVDAPFG 74
          + S+     +AP G
Sbjct: 61 LASTVNNHAEAPTG 74

[Close]
BLAST of CmaCh09G012620 vs. NCBI nr
Match: gi|700189736|gb|KGN44969.1| (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 1  MAMGKGFKLFHTLFLVVAWQ-CCAKVGATFGDVTGAVN--LDDQFSFRATG-SHDTKAPV 60
          M M +GFKLF TL LV AW+ CCA+VGATF D TG VN  L+ QFSFRA G  H     V
Sbjct: 1  MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61 TAPIGSSTEVQVDAPFGSIAQTPEALTPEG 87
             I S+ + Q+       A+ P  + P G
Sbjct: 61 DGSITSTVKKQIH------AEAPAGIAPVG 84

The following BLAST results are available for this feature:
BLAST of CmaCh09G012620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K662_CUCSA1.4e-1135.33Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1[more]
A0A0A0K5J0_CUCSA2.5e-0852.70Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
A0A0A0K7W7_CUCSA2.5e-0847.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1[more]
BLAST of CmaCh09G012620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101536|ref|XP_008451657.1|3.4e-1466.67PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo... [more]
gi|659101534|ref|XP_008451656.1|2.9e-1365.00PREDICTED: cell wall protein AWA1-like [Cucumis melo][more]
gi|700189730|gb|KGN44963.1|2.1e-1135.33Ankyrin repeat protein [Cucumis sativus][more]
gi|700189732|gb|KGN44965.1|3.6e-0852.70hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|700189736|gb|KGN44969.1|3.6e-0847.78hypothetical protein Csa_7G399280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012620.1CmaCh09G012620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012620Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012620Melon (DHL92) v3.5.1cmameB010
CmaCh09G012620Cucurbita pepo (Zucchini)cmacpeB062