CmaCh09G012410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr09 : 8320510 .. 8323031 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGATTCAAATCGTTAAAGATATCAATAGCTATTATAAAAGCTGCTGGACAGTGAAAGCGAAGAGATTCATTCAAAAATATATCAATCCAGTGATGAAGATGATCGTTCTTGTTGTTGTGATTTTGCTCATTGGCGTCGTTGTTTTACGCACACTTTGTGGTTGGTTTGGTTGCTCTAGAATTTTGAACGTGGTTTCTCCTATTATTATTTATAACTTTCAAAATTTTCTTTAGTTGATTTTCTCCTATTGTTATTGAGAAACGGCATTCATAACACTTCGATCAATGAAAAGCTTCAATTCTAAGTGATCACATGCACCTTCAATTTGCAGCTATTATAAAGAGTTCTTTGGAGGTTTCATTTAAACTTTCATAAATGGGTTGATCTCGTGTAATTAAATTCAAACCCTAAACCCTAACACAGAAGACACAAGGATTAAATTCAAATGTTAAAAATCTTAAAAGTACAAAACATGTATGTAAAGTCAACGAAAAAATAGTTTACAATATATAACTGTTAGAACCATGTTCTTGACTGGCTAACAAATTCTAAAAATCTACAAGTGATGGTTGAGGGGGTCATTGTTCTATAGTCATAACAAAGATTCTATATTCTAGTCGCAATCCGTAGATAATGATCCTCTTTATTCGAGTTTTTCCAATGACGGACTTTGGGTCTAGTTTAGTAATCTCCCAACAGATCGACTTGATCCTGTGAAAGTACTGAGTAATCATAATGTCAGTTGTGAGATTGATAACAATTCGTTCTCCAGAAGTTGTTGCCTCATATCGTTCTTCTTCGAAAACAACATTACAAACCTGTCCCATGCTTTTTTCGGTGTCTTGTCATCTCAAATGTGCTCTAACGTCTCTTCTTCAATTATGGTCTTTAAGGAAAACATTACTTTGCCTGCTTTGATTCTCTATTTTCACAAAGTGCCATTAGAATCTTCCTCTGACGGCGTAGTTTCACTGCCACCAACAACCTCCCAAAGGTTCTGTTCTTGTAAATAGGACATAATGAATGTTGCCCACATGTTGTAGTTGTTGTTGTTGCTGAGTTTCTTGATTCCTCCAACGATTTAAAAAGCACCCATCGTGTTCACTATACCTTAGTACTACTCACGACACAAAAAAACTCACTCACTAATAATTTCAAGGAATCGTTTCTGATGTGGAAGATCAGATACAGCAGATACAGCTGCAACAGATCATATTAAGAATTCAAAGAGATTAGACAACACTAATATTAAGAATTCAAAGAGATTAGACAACACTAACCTTGCTCTGATACCAGTCTATTGAACATAACTCTTTCTAGGAAACACTCGCAATCTTTACTATCTTCAATCGAAAAGAGATTACAAGACACTTAGAGTGGATGAGTATTTATAACAGAGACTAATAGAATAGTAATGCATTTTGCTCTAATTGATGCTCCAATTAAGATTGTTTTAGCTTATTGGATGAAAATCTAGGTAAGACGTAAGGTCTCATGGTTTTACTTTAGGTTTTCCCAAAAGGCCTCATTTCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGTCCCAATAATCCATAACATGTCCTACGATCCATTTGTAAGTAAAGAATTGCAAGAATGAATATAAAAATACTTAGTAAACAATCTATTTCTAGGCTCTTATCGAAACTTCTCATATTTAGTGTTCTTAAGATATGTTCTCAATAAGGTTCCTAGTGTTAGCCAATTCTATAGCTCAAGTTCTTTCCTAGCCCTCTCAGTAGGGTTGTACATGGGTTTGGTCGGGTTGGATTGAGAATTTTTTTTGAAAAAACCCAAAAGTTCAATTGGCCGGATTGGTAACCTAACCCAATCCATAATTCTTTCACAACCCAACCCAACCCTATATACTTTTGGGTTGGGTTTGGGTTGTTCAAACAAAATTAATTTTTTAAAAAACTCTTATTTATGGAGTATAAACCTGGAACAAGAATGTTGAATGCGATACGAGGAGGAAGAAGAAGAACTCTTGGGTTGTTGTAGTACAAACCTCGAACATGAATGTCGAATATGTGGAGGCTACTGGCCCTGATTGCTTGAGGGAAGAACTCGAAGGCTGAAGTCTGATGCGATGCAAGGAGGAAGAAAAACTTGAAGTATGATGCGACGTGAACGACGAATGTGATGGAGATAAGGGTTTTCTTTTATGTCTTCTCTTCTCTTTGCTTGTGGCTTGTGTTAATGGCTTGATGTGACTACGAGGAATACTGCCAATGACGAGGGAAGGCTAGGAAAATGGTCTCTCATCTAGTACCAATGTGGGTTTGAAGTTGAGTCTGAATAGAACTAGGCTCGAGTCATTGCGCTTGAAAATCTTTCGCCTTCTACTGAGTTCCTGGCTCTTCTTTTTTTTGTTTTTTTATAATAAAATCAGGTCAATTTGAGTTGACTCGGTTCTTTTCACCTGAACTCGAACCAGACCCTAATCCACATGATTTGCACTAA

mRNA sequence

ATGGCTGAGATTCAAATCGTTAAAGATATCAATAGCTATTATAAAAGCTGCTGGACAGTGAAAGCGAAGAGATTCATTCAAAAATATATCAATCCAGTGATGAAGATGATCGTTCTTGTTGTTGTGATTTTGCTCATTGGCGTCGTTGTTTTACGCACACTTTGTGGTCAATTTGAGTTGACTCGGTTCTTTTCACCTGAACTCGAACCAGACCCTAATCCACATGATTTGCACTAA

Coding sequence (CDS)

ATGGCTGAGATTCAAATCGTTAAAGATATCAATAGCTATTATAAAAGCTGCTGGACAGTGAAAGCGAAGAGATTCATTCAAAAATATATCAATCCAGTGATGAAGATGATCGTTCTTGTTGTTGTGATTTTGCTCATTGGCGTCGTTGTTTTACGCACACTTTGTGGTCAATTTGAGTTGACTCGGTTCTTTTCACCTGAACTCGAACCAGACCCTAATCCACATGATTTGCACTAA

Protein sequence

MAEIQIVKDINSYYKSCWTVKAKRFIQKYINPVMKMIVLVVVILLIGVVVLRTLCGQFELTRFFSPELEPDPNPHDLH

Homology

[Close]

BLAST of CmaCh09G012410 vs. TrEMBL
Match: A0A0A0KSY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650621 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MAEIQIVKDINSYYKSCWTVKAKRFIQKYINPVMKMIVLVVVILLIGVVVLRTLCGQFEL 60
           MAEIQI KDIN YY+SCW VKA+R +++Y+NPV+K+I ++VVILL+ VVV+RT CG F  
Sbjct: 395 MAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVILLVVVVVVRTFCGWFGC 454

Query: 61  TR 63
           +R
Sbjct: 455 SR 456

[Close]

BLAST of CmaCh09G012410 vs. NCBI nr
Match: gi|778708033|ref|XP_011656112.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MAEIQIVKDINSYYKSCWTVKAKRFIQKYINPVMKMIVLVVVILLIGVVVLRTLCGQFEL 60
           MAEIQI KDIN YY+SCW VKA+R +++Y+NPV+K+I ++VVILL+ VVV+RT CG F  
Sbjct: 470 MAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVILLVVVVVVRTFCGWFGC 529

Query: 61  TR 63
           +R
Sbjct: 530 SR 531

[Close]

BLAST of CmaCh09G012410 vs. NCBI nr
Match: gi|700197521|gb|KGN52698.1| (hypothetical protein Csa_5G650621 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MAEIQIVKDINSYYKSCWTVKAKRFIQKYINPVMKMIVLVVVILLIGVVVLRTLCGQFEL 60
           MAEIQI KDIN YY+SCW VKA+R +++Y+NPV+K+I ++VVILL+ VVV+RT CG F  
Sbjct: 395 MAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVILLVVVVVVRTFCGWFGC 454

Query: 61  TR 63
           +R
Sbjct: 455 SR 456

[Close]

BLAST of CmaCh09G012410 vs. NCBI nr
Match: gi|659119430|ref|XP_008459652.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MAEIQIVKDINSYYKSCWTVKAKRFIQKYINPVMKMIVLVVVILLIGVVVLRTLCGQFEL 60
           MAEIQI KDIN YY+SCW VKA+R +++Y+NPV+K+I ++VVILLI VVV+RT CG F  
Sbjct: 470 MAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFVMVVILLIVVVVVRTFCGWFGC 529

Query: 61  TR 63
           +R
Sbjct: 530 SR 531

The following BLAST results are available for this feature:

BLAST of CmaCh09G012410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY3_CUCSA	2.6e-13	62.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650621 PE=4 SV=1	[more]

BLAST of CmaCh09G012410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708033\|ref\|XP_011656112.1\|	3.8e-13	62.90	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus]	[more]
gi\|700197521\|gb\|KGN52698.1\|	3.8e-13	62.90	hypothetical protein Csa_5G650621 [Cucumis sativus]	[more]
gi\|659119430\|ref\|XP_008459652.1\|	3.8e-13	64.52	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012410.1	CmaCh09G012410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012410	Cucurbita pepo (Zucchini)	cmacpeB056
CmaCh09G012410	Cucurbita pepo (Zucchini)	cmacpeB062
CmaCh09G012410	Bottle gourd (USVL1VR-Ls)	cmalsiB033
CmaCh09G012410	Cucumber (Gy14) v2	cgybcmaB579
CmaCh09G012410	Melon (DHL92) v3.6.1	cmamedB011
CmaCh09G012410	Silver-seed gourd	carcmaB0500
CmaCh09G012410	Cucumber (Chinese Long) v3	cmacucB0037
CmaCh09G012410	Watermelon (97103) v2	cmawmbB036
CmaCh09G012410	Wax gourd	cmawgoB0013
CmaCh09G012410	Cucurbita maxima (Rimu)	cmacmaB046
CmaCh09G012410	Cucumber (Gy14) v1	cgycmaB0657
CmaCh09G012410	Cucurbita moschata (Rifu)	cmacmoB029
CmaCh09G012410	Cucurbita moschata (Rifu)	cmacmoB043
CmaCh09G012410	Wild cucumber (PI 183967)	cmacpiB030
CmaCh09G012410	Cucumber (Chinese Long) v2	cmacuB030
CmaCh09G012410	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012410	Watermelon (Charleston Gray)	cmawcgB030
CmaCh09G012410	Watermelon (97103) v1	cmawmB015