CmaCh09G012360 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat-containing protein
LocationCma_Chr09 : 8236380 .. 8237154 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATGTTGATCTGATTGAAGATCCACAAGATTATGGATTCCTCAACAAGGGCGATGAGAATGAAAATACCATTTTGGATTACACCTTCGAGGGTAATATCATTTGTTCGACATTTGAGGATTCTATTGACACGGCTATGTTAAGGGCATGACTCTAATACCATGTTAAGAATCAAGGATCTCCACAATTGTATGATATTGTCCACTTTTAGCATAAGCTCTTGTGGCTTTTCTTTGAGATTCCCCAAAATGCCTAATGCCAATGGAGATGTATTCCTTAATCATAAACTCACGCTTATTCACTAAAATAGCCAATGTGGGACTCCCTCCCAACAATCCTCAACACTATCATGATATAAACAAATTGACTTCAAATTGTGCACATAGCAGAATTGAAGAACAATGCGATAAAAAGCCATCGATATCACTAACACTTAAAACGTTTATAAGAAGTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

mRNA sequence

ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

Coding sequence (CDS)

ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

Protein sequence

MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKILWMKNLEYKGDGFKKCKAQWIFKAQSTLQAVFGKKAFLSTPITLFTIRFI
Homology
[Close]
BLAST of CmaCh09G012360 vs. TrEMBL
Match: A0A0A0LDC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846580 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +VRD NG IPLHHAVI G + ++  LI ARPRS WIK+ NGQTVLHLC++ NHLE +K+L
Sbjct: 116 LVRDFNGLIPLHHAVIGGHVQMVKELIRARPRSMWIKLKNGQTVLHLCVEDNHLEVIKLL 175

[Close]
BLAST of CmaCh09G012360 vs. TrEMBL
Match: A0A0A0LCQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847090 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +V D NGFIPLH+AV  G I+++ LLINARP+S  +K+NNG+TVLHLC++ NHLE LK+L
Sbjct: 130 LVEDHNGFIPLHYAVTRGNIEMMELLINARPQSILMKLNNGKTVLHLCVEGNHLEGLKLL 189

Query: 61  WMKNL 66
             + L
Sbjct: 190 IAQTL 194

[Close]
BLAST of CmaCh09G012360 vs. TrEMBL
Match: A0A0A0LFQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846590 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 2   VRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKI-NNGQTVLHLCIKHNHLEALKIL 61
           V D +G IPLH+AV++GQ DI+  LI ARPRS W+K+ NNGQTVLHLC++ NHLE +K L
Sbjct: 125 VYDSDGLIPLHYAVLSGQTDIMQKLIKARPRSLWMKLKNNGQTVLHLCVESNHLEGMKFL 184

[Close]
BLAST of CmaCh09G012360 vs. TrEMBL
Match: A0A0A0LMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287040 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.0e-12
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKI---NNGQTVLHLCIKHNHLEAL 60
           +V+DLNGFIPLH+AVI+  I+++ LLI ARP+S  +K    NNG+TVLHLC++ N+LE +
Sbjct: 140 LVQDLNGFIPLHYAVISENIEMMKLLIKARPQSILMKALHNNNGKTVLHLCVEGNYLEGM 199

Query: 61  KILWMKNLEYKGD 71
           K+L  + L +  D
Sbjct: 200 KLLIPQTLLFDKD 212

[Close]
BLAST of CmaCh09G012360 vs. TrEMBL
Match: W9QDV3_9ROSA (Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_013455 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           + +D  G IPLH+A + G +D+I LL++A+ RS +  + +G+TVLHLC+++NHLEALK+L
Sbjct: 112 LAKDECGRIPLHYAAMRGHVDVIELLVSAQQRSIFEVLPDGETVLHLCVQYNHLEALKVL 171

Query: 61  WMKNLEYKGDGFKKCK 77
            +K++ Y    F   K
Sbjct: 172 -VKSVGYHNADFLNSK 186

[Close]
BLAST of CmaCh09G012360 vs. NCBI nr
Match: gi|778688967|ref|XP_004141215.2| (PREDICTED: ankyrin repeat-containing protein At3g12360 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +VRD NG IPLHHAVI G + ++  LI ARPRS WIK+ NGQTVLHLC++ NHLE +K+L
Sbjct: 116 LVRDFNGLIPLHHAVIGGHVQMVKELIRARPRSMWIKLKNGQTVLHLCVEDNHLEVIKLL 175

[Close]
BLAST of CmaCh09G012360 vs. NCBI nr
Match: gi|700204660|gb|KGN59793.1| (hypothetical protein Csa_3G846580 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +VRD NG IPLHHAVI G + ++  LI ARPRS WIK+ NGQTVLHLC++ NHLE +K+L
Sbjct: 116 LVRDFNGLIPLHHAVIGGHVQMVKELIRARPRSMWIKLKNGQTVLHLCVEDNHLEVIKLL 175

[Close]
BLAST of CmaCh09G012360 vs. NCBI nr
Match: gi|659128035|ref|XP_008464015.1| (PREDICTED: ankyrin-1-like isoform X2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +VRD NG IPLHHAVI G ++++  LI ARPRS W K+ NGQTVLHLC++ NHLE +K+L
Sbjct: 120 LVRDFNGLIPLHHAVIGGHVEMVKELILARPRSMWTKLKNGQTVLHLCVEDNHLEVMKLL 179

[Close]
BLAST of CmaCh09G012360 vs. NCBI nr
Match: gi|659128033|ref|XP_008464014.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +VRD NG IPLHHAVI G ++++  LI ARPRS W K+ NGQTVLHLC++ NHLE +K+L
Sbjct: 120 LVRDFNGLIPLHHAVIGGHVEMVKELILARPRSMWTKLKNGQTVLHLCVEDNHLEVMKLL 179

[Close]
BLAST of CmaCh09G012360 vs. NCBI nr
Match: gi|449446917|ref|XP_004141217.1| (PREDICTED: uncharacterized protein LOC101204214 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           +V D NGFIPLH+AV  G I+++ LLINARP+S  +K+NNG+TVLHLC++ NHLE LK+L
Sbjct: 130 LVEDHNGFIPLHYAVTRGNIEMMELLINARPQSILMKLNNGKTVLHLCVEGNHLEGLKLL 189

Query: 61  WMKNL 66
             + L
Sbjct: 190 IAQTL 194

The following BLAST results are available for this feature:
BLAST of CmaCh09G012360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDC0_CUCSA2.1e-1665.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846580 PE=4 SV=1[more]
A0A0A0LCQ0_CUCSA1.5e-1460.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847090 PE=4 SV=1[more]
A0A0A0LFQ3_CUCSA2.2e-1363.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846590 PE=4 SV=1[more]
A0A0A0LMQ1_CUCSA7.0e-1252.05Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287040 PE=4 SV=1[more]
W9QDV3_9ROSA1.7e-1044.74Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_013455 PE=4 SV=1[more]
BLAST of CmaCh09G012360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688967|ref|XP_004141215.2|3.0e-1665.00PREDICTED: ankyrin repeat-containing protein At3g12360 [Cucumis sativus][more]
gi|700204660|gb|KGN59793.1|3.0e-1665.00hypothetical protein Csa_3G846580 [Cucumis sativus][more]
gi|659128035|ref|XP_008464015.1|1.5e-1563.33PREDICTED: ankyrin-1-like isoform X2 [Cucumis melo][more]
gi|659128033|ref|XP_008464014.1|1.5e-1563.33PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis ... [more]
gi|449446917|ref|XP_004141217.1|2.2e-1460.00PREDICTED: uncharacterized protein LOC101204214 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012360.1CmaCh09G012360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 6..38
score: 0.07coord: 40..69
score: 2
IPR002110Ankyrin repeatPROFILEPS50088ANK_REPEATcoord: 6..28
score: 8
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 3..61
score: 3.7
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 6..62
score: 6.2
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 1..60
score: 12
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 3..63
score: 1.87
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 1..60
score: 3.9
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 1..60
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012360Cucurbita moschata (Rifu)cmacmoB029
CmaCh09G012360Cucurbita moschata (Rifu)cmacmoB043
CmaCh09G012360Wild cucumber (PI 183967)cmacpiB030
CmaCh09G012360Cucumber (Chinese Long) v2cmacuB030
CmaCh09G012360Melon (DHL92) v3.5.1cmameB010
CmaCh09G012360Watermelon (Charleston Gray)cmawcgB030
CmaCh09G012360Watermelon (97103) v1cmawmB015
CmaCh09G012360Cucurbita pepo (Zucchini)cmacpeB056
CmaCh09G012360Cucurbita pepo (Zucchini)cmacpeB062
CmaCh09G012360Bottle gourd (USVL1VR-Ls)cmalsiB033
CmaCh09G012360Cucumber (Gy14) v2cgybcmaB579
CmaCh09G012360Melon (DHL92) v3.6.1cmamedB011
CmaCh09G012360Silver-seed gourdcarcmaB0061
CmaCh09G012360Cucumber (Chinese Long) v3cmacucB0037
CmaCh09G012360Watermelon (97103) v2cmawmbB036
CmaCh09G012360Wax gourdcmawgoB0012
CmaCh09G012360Cucurbita maxima (Rimu)cmacmaB046
CmaCh09G012360Cucumber (Gy14) v1cgycmaB0087