CmaCh09G012340 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-PL Gag-Pol polyprotein
Location	Cma_Chr09 : 8232391 .. 8233296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGGCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATTATTAGCAAAGGGGATATTCGTTTACTAGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

mRNA sequence

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGGCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATTATTAGCAAAGGGGATATTCGTTTACTAGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

Coding sequence (CDS)

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGGCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATTATTAGCAAAGGGGATATTCGTTTACTAGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

Protein sequence

MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSASMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKWILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWRSTLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQVHHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVARKE

Homology

[Close]

BLAST of CmaCh09G012340 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.5e-89
Identity = 160/297 (53.87%), Postives = 218/297 (73.40%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            MKDLG A++ILGM+I R+R    +WL+Q +Y+ +VL RF++ ++ KPVSTPLA H KLS 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNA-KPVSTPLAGHLKLSK 1094

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
             MCP++ ++K  M  +PY++AVG+LMYAMVCTR D++HAV +VSR++ NPGKEHW+AVKW
Sbjct: 1095 KMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1154

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
            ILRY+ GT    + F        D  +  + D+D AGD+D R+S+TGYLFT +GG I W+
Sbjct: 1155 ILRYLRGTTGDCLCFGGS-----DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQ 1214

Query: 181  STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
            S LQ  VALSTTEAEY+A TE  KE IW+   + +LG+ Q    V+CD QSAI LSKN +
Sbjct: 1215 SKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSM 1274

Query: 241  HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINV 298
            +HARTKHIDVR+H+IRE++    +++L+I   +NPADMLTKV+ R KF  C +L+ +
Sbjct: 1275 YHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of CmaCh09G012340 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 205.7 bits (522), Expect = 7.2e-52
Identity = 118/303 (38.94%), Postives = 180/303 (59.41%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            M DL   K  +G+ IE    K  ++L+QS Y++K+LS+F++ ++   VSTPL    K++ 
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDK--IYLSQSAYVKKILSKFNM-ENCNAVSTPLPS--KINY 1173

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
             +  S +D      N P  + +G LMY M+CTR DL+ AV+I+SRY      E WQ +K 
Sbjct: 1174 ELLNSDEDC-----NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1233

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAG-GPICW 180
            +LRY+ GTID+ + F+K   F  +N++  +VDSD+AG    R+STTGYLF M     ICW
Sbjct: 1234 VLRYLKGTIDMKLIFKKNLAF--ENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1293

Query: 181  RSTLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGI-LQGHIDVFCDRQSAICLSKN 240
             +  Q++VA S+TEAEYMA+ EA +EA+W+  L+  + I L+  I ++ D Q  I ++ N
Sbjct: 1294 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1353

Query: 241  QVHHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVA 300
               H R KHID+++HF RE +    I L  I   +  AD+ TK +   +F    D + + 
Sbjct: 1354 PSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1404

Query: 301  RKE 302
            + +
Sbjct: 1414 QDD 1404

[Close]

BLAST of CmaCh09G012340 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-23
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG     LG++I +    G+ +L+Q++Y  ++L+   + D  KP+STPL    KL++
Sbjct: 33  MKDLGPVHYFLGIQI-KTHPSGL-FLSQTKYAEQILNNAGMLDC-KPMSTPLP--LKLNS 92

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S+  +     +Y +   + + VGAL Y +  TR D+S+AV+IV + MH P    +  +K 
Sbjct: 93  SVSTA-----KYPDPSDFRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKR 152

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           +LRY+ GTI  G+   K    N    V  F DSD+AG    RRSTTG+   +    I W 
Sbjct: 153 VLRYVKGTIFHGLYIHKNSKLN----VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWS 212

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIW 209
           +  Q TV+ S+TE EY A+     E  W
Sbjct: 213 AKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh09G012340 vs. TrEMBL
Match: Q94FM1_CITPA (Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.7e-106
Identity = 185/299 (61.87%), Postives = 234/299 (78.26%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK LG+A++ILGM+I RD+K   VWLTQ  YL+KVL RF ++D TK V TPLA HFKLS+
Sbjct: 1   MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP S +++ YM  +PY + VG+L+YAMVCTR D+S AVS+VSRYMHNPGK  W AVKW
Sbjct: 61  SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRY+ GT+DVG+ F+K    N   +   + DSD+AGDLDK+RST+GY+FT+ GG + WR
Sbjct: 121 ILRYLYGTVDVGLLFKK----NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWR 180

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S LQST+ALSTTEAEY+A TEA KEAIW+ GL+ DLG++Q +I VFCD QSAI L+KNQ 
Sbjct: 181 SILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQT 240

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVAR 300
           +HARTKHIDV++H++REII  GD+ L +I   DNP+DMLTKV++  KF HCL LI + R
Sbjct: 241 YHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQILR 295

[Close]

BLAST of CmaCh09G012340 vs. TrEMBL
Match: Q153Y3_PRUAV (Polyprotein (Fragment) OS=Prunus avium PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.5e-104
Identity = 185/251 (73.71%), Postives = 216/251 (86.06%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG A+KILGMEIERDR KG + L Q QYL+KVL RF +N+++KPVSTPLAPHFKLSA
Sbjct: 28  MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSA 87

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           SM P++D++  YM  IPY +AVG+LMYAMVCTR D+S AVSIVSRYMHNPGK HWQAVKW
Sbjct: 88  SMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKW 147

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYILGT+DVG+ FQ+ ++      V  +VDSDYAGDLDKRRSTTG++FT+AGGP+ WR
Sbjct: 148 ILRYILGTVDVGLLFQQDKVSG--QCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWR 207

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S LQSTVALSTTEAEYMAVTEA KEAIW+ GL++DLG+ Q H+DV+CD QSAI L+KNQV
Sbjct: 208 SILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLAKNQV 267

Query: 241 HHARTKHIDVR 252
           HHARTKHIDVR
Sbjct: 268 HHARTKHIDVR 276

[Close]

BLAST of CmaCh09G012340 vs. TrEMBL
Match: A5C541_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003855 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 7.9e-98
Identity = 171/294 (58.16%), Postives = 224/294 (76.19%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG  KKI+G+EI RDR  G +WL+Q  Y++++L RF++ D+ KPVSTPLA HF+LS 
Sbjct: 116 MKDLGVTKKIIGIEIHRDRALGRLWLSQHNYVKRMLERFNM-DNAKPVSTPLANHFRLST 175

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP +D +   M  +PY +AVG LMYAMVCTRLDL+HAVS+VS+++ NPG+ +W AVKW
Sbjct: 176 SQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKW 235

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           I RY+ GT D GI F KQ+    D  V  +VD+DYAGDLD+RRST GY+FT+ GGPICW+
Sbjct: 236 IFRYLRGTTDYGITFSKQQS---DPSVKGYVDADYAGDLDERRSTIGYVFTLGGGPICWK 295

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S +QS VAL TT++EYMA+ E  KE++W+ GL+ +LGI QG + ++ D QSAI L KNQV
Sbjct: 296 SMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYFDNQSAIYLEKNQV 355

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDL 295
           +HARTKHIDVRFH I E++S G++ L ++  ++N ADMLTK +  EKF HCL L
Sbjct: 356 YHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEKFKHCLKL 405

[Close]

BLAST of CmaCh09G012340 vs. TrEMBL
Match: Q153Y5_SOLME (Polyprotein (Fragment) OS=Solanum melongena PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.9e-97
Identity = 172/251 (68.53%), Postives = 209/251 (83.27%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG AKKILGMEI RDR++G + LTQ QYL+KVL RF +ND +KPVSTPLAPH KLS+
Sbjct: 113 MKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSS 172

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            + P +D+++ YM  +PY NAVG+LMYAMVCTR D+S AVS+VSRYMH+PGK HWQAVKW
Sbjct: 173 QLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKW 232

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYI  T+D+G+ F++ +  +L + V  + DSDYAGDLDKRRSTTGYLFT+A GP+ W+
Sbjct: 233 ILRYIKNTVDIGLVFEQDK--SLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWK 292

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           STLQ+TVALSTTEAEYMA+TEA KEAIW+HGL+ +LG+ Q H+ V  D QSAI L+KNQV
Sbjct: 293 STLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQV 352

Query: 241 HHARTKHIDVR 252
            HARTKHIDVR
Sbjct: 353 FHARTKHIDVR 361

[Close]

BLAST of CmaCh09G012340 vs. TrEMBL
Match: A0A151RHK1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_036552 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.3e-96
Identity = 167/300 (55.67%), Postives = 229/300 (76.33%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK+LG AKKILGMEI RDR+ G ++L+Q +Y+ ++L RF++N+  KPVSTPLA HFKLS+
Sbjct: 98  MKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNC-KPVSTPLAAHFKLSS 157

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            +CP + ++   M ++PY +AVG+LMYAMVCTR DL++AVS+VSRYMHNPGK+HW AVKW
Sbjct: 158 DLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKW 217

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           I RY+ GT ++G+ F + +     N VA FVDSDY GDLD+RRS +GY+FT+    I W+
Sbjct: 218 IFRYLKGTSNIGLVFDRNKATT--NNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWK 277

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           ++LQS  ALSTTEAEY++ TE  KEA+W+ GL+ +LG+ Q  + VFCD QSAI L+KN  
Sbjct: 278 ASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSR 337

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVARK 300
           +H +TKHIDV+ HFIR+I++ G++ L ++  ++NPADMLTK +   KF HCL L+ +  K
Sbjct: 338 YHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKPLPNAKFQHCLGLVGLYNK 394

[Close]

BLAST of CmaCh09G012340 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-30
Identity = 90/258 (34.88%), Postives = 129/258 (50.00%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           ++DLG  K  LG+EI R      + + Q +Y   +L    L    KP S P+ P    SA
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLL-GCKPSSVPMDPSVTFSA 369

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
               S  D   +++   Y   +G LMY  + TRLD+S AV+ +S++   P   H QAV  
Sbjct: 370 H---SGGD---FVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMK 429

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           IL YI GT+  G+ +  Q    L      F D+ +    D RRST GY   +    I W+
Sbjct: 430 ILHYIKGTVGQGLFYSSQAEMQLQV----FSDASFQSCKDTRRSTNGYCMFLGTSLISWK 489

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGI-LQGHIDVFCDRQSAICLSKNQ 240
           S  Q  V+ S+ EAEY A++ A  E +W+     +L + L     +FCD  +AI ++ N 
Sbjct: 490 SKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNA 549

Query: 241 VHHARTKHIDVRFHFIRE 258
           V H RTKHI+   H +RE
Sbjct: 550 VFHERTKHIESDCHSVRE 553

[Close]

BLAST of CmaCh09G012340 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-25
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG     LG++I +    G+ +L+Q++Y  ++L+   + D  KP+STPL    KL++
Sbjct: 33  MKDLGPVHYFLGIQI-KTHPSGL-FLSQTKYAEQILNNAGMLDC-KPMSTPLP--LKLNS 92

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S+  +     +Y +   + + VGAL Y +  TR D+S+AV+IV + MH P    +  +K 
Sbjct: 93  SVSTA-----KYPDPSDFRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKR 152

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           +LRY+ GTI  G+   K    N    V  F DSD+AG    RRSTTG+   +    I W 
Sbjct: 153 VLRYVKGTIFHGLYIHKNSKLN----VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWS 212

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIW 209
           +  Q TV+ S+TE EY A+     E  W
Sbjct: 213 AKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh09G012340 vs. NCBI nr
Match: gi|14586968|gb|AAK70406.1|AF369930_1 (pol polyprotein [Citrus x paradisi])

HSP 1 Score: 393.3 bits (1009), Expect = 3.9e-106
Identity = 185/299 (61.87%), Postives = 234/299 (78.26%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK LG+A++ILGM+I RD+K   VWLTQ  YL+KVL RF ++D TK V TPLA HFKLS+
Sbjct: 1   MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP S +++ YM  +PY + VG+L+YAMVCTR D+S AVS+VSRYMHNPGK  W AVKW
Sbjct: 61  SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRY+ GT+DVG+ F+K    N   +   + DSD+AGDLDK+RST+GY+FT+ GG + WR
Sbjct: 121 ILRYLYGTVDVGLLFKK----NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWR 180

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S LQST+ALSTTEAEY+A TEA KEAIW+ GL+ DLG++Q +I VFCD QSAI L+KNQ 
Sbjct: 181 SILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQT 240

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVAR 300
           +HARTKHIDV++H++REII  GD+ L +I   DNP+DMLTKV++  KF HCL LI + R
Sbjct: 241 YHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQILR 295

[Close]

BLAST of CmaCh09G012340 vs. NCBI nr
Match: gi|108863081|gb|ABG22123.1| (polyprotein [Prunus avium])

HSP 1 Score: 386.7 bits (992), Expect = 3.6e-104
Identity = 185/251 (73.71%), Postives = 216/251 (86.06%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG A+KILGMEIERDR KG + L Q QYL+KVL RF +N+++KPVSTPLAPHFKLSA
Sbjct: 28  MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSA 87

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           SM P++D++  YM  IPY +AVG+LMYAMVCTR D+S AVSIVSRYMHNPGK HWQAVKW
Sbjct: 88  SMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKW 147

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYILGT+DVG+ FQ+ ++      V  +VDSDYAGDLDKRRSTTG++FT+AGGP+ WR
Sbjct: 148 ILRYILGTVDVGLLFQQDKVSG--QCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWR 207

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S LQSTVALSTTEAEYMAVTEA KEAIW+ GL++DLG+ Q H+DV+CD QSAI L+KNQV
Sbjct: 208 SILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLAKNQV 267

Query: 241 HHARTKHIDVR 252
           HHARTKHIDVR
Sbjct: 268 HHARTKHIDVR 276

[Close]

BLAST of CmaCh09G012340 vs. NCBI nr
Match: gi|147859193|emb|CAN79684.1| (hypothetical protein VITISV_003855 [Vitis vinifera])

HSP 1 Score: 365.2 bits (936), Expect = 1.1e-97
Identity = 171/294 (58.16%), Postives = 224/294 (76.19%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG  KKI+G+EI RDR  G +WL+Q  Y++++L RF++ D+ KPVSTPLA HF+LS 
Sbjct: 116 MKDLGVTKKIIGIEIHRDRALGRLWLSQHNYVKRMLERFNM-DNAKPVSTPLANHFRLST 175

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP +D +   M  +PY +AVG LMYAMVCTRLDL+HAVS+VS+++ NPG+ +W AVKW
Sbjct: 176 SQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKW 235

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           I RY+ GT D GI F KQ+    D  V  +VD+DYAGDLD+RRST GY+FT+ GGPICW+
Sbjct: 236 IFRYLRGTTDYGITFSKQQS---DPSVKGYVDADYAGDLDERRSTIGYVFTLGGGPICWK 295

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           S +QS VAL TT++EYMA+ E  KE++W+ GL+ +LGI QG + ++ D QSAI L KNQV
Sbjct: 296 SMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYFDNQSAIYLEKNQV 355

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDL 295
           +HARTKHIDVRFH I E++S G++ L ++  ++N ADMLTK +  EKF HCL L
Sbjct: 356 YHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEKFKHCLKL 405

[Close]

BLAST of CmaCh09G012340 vs. NCBI nr
Match: gi|108863072|gb|ABG22121.1| (polyprotein [Solanum melongena])

HSP 1 Score: 362.8 bits (930), Expect = 5.6e-97
Identity = 172/251 (68.53%), Postives = 209/251 (83.27%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG AKKILGMEI RDR++G + LTQ QYL+KVL RF +ND +KPVSTPLAPH KLS+
Sbjct: 113 MKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSS 172

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            + P +D+++ YM  +PY NAVG+LMYAMVCTR D+S AVS+VSRYMH+PGK HWQAVKW
Sbjct: 173 QLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKW 232

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYI  T+D+G+ F++ +  +L + V  + DSDYAGDLDKRRSTTGYLFT+A GP+ W+
Sbjct: 233 ILRYIKNTVDIGLVFEQDK--SLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWK 292

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           STLQ+TVALSTTEAEYMA+TEA KEAIW+HGL+ +LG+ Q H+ V  D QSAI L+KNQV
Sbjct: 293 STLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQV 352

Query: 241 HHARTKHIDVR 252
            HARTKHIDVR
Sbjct: 353 FHARTKHIDVR 361

[Close]

BLAST of CmaCh09G012340 vs. NCBI nr
Match: gi|1012342160|gb|KYP53356.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 359.4 bits (921), Expect = 6.2e-96
Identity = 167/300 (55.67%), Postives = 229/300 (76.33%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK+LG AKKILGMEI RDR+ G ++L+Q +Y+ ++L RF++N+  KPVSTPLA HFKLS+
Sbjct: 207 MKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNC-KPVSTPLAAHFKLSS 266

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            +CP + ++   M ++PY +AVG+LMYAMVCTR DL++AVS+VSRYMHNPGK+HW AVKW
Sbjct: 267 DLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKW 326

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           I RY+ GT ++G+ F + +     N VA FVDSDY GDLD+RRS +GY+FT+    I W+
Sbjct: 327 IFRYLKGTSNIGLVFDRNKATT--NNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWK 386

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLGILQGHIDVFCDRQSAICLSKNQV 240
           ++LQS  ALSTTEAEY++ TE  KEA+W+ GL+ +LG+ Q  + VFCD QSAI L+KN  
Sbjct: 387 ASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSR 446

Query: 241 HHARTKHIDVRFHFIREIISKGDIRLLEIGIADNPADMLTKVIAREKFCHCLDLINVARK 300
           +H +TKHIDV+ HFIR+I++ G++ L ++  ++NPADMLTK +   KF HCL L+ +  K
Sbjct: 447 YHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKPLPNAKFQHCLGLVGLYNK 503

The following BLAST results are available for this feature:

BLAST of CmaCh09G012340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.5e-89	53.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	7.2e-52	38.94	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	1.1e-23	36.54	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmaCh09G012340 vs. TrEMBL


Match Name	E-value	Identity	Description
Q94FM1_CITPA	2.7e-106	61.87	Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1	[more]
Q153Y3_PRUAV	2.5e-104	73.71	Polyprotein (Fragment) OS=Prunus avium PE=4 SV=1	[more]
A5C541_VITVI	7.9e-98	58.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003855 PE=4 SV=1	[more]
Q153Y5_SOLME	3.9e-97	68.53	Polyprotein (Fragment) OS=Solanum melongena PE=4 SV=1	[more]
A0A151RHK1_CAJCA	4.3e-96	55.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmaCh09G012340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.8e-30	34.88	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.1e-25	36.54	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmaCh09G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|14586968\|gb\|AAK70406.1\|AF369930_1	3.9e-106	61.87	pol polyprotein [Citrus x paradisi]	[more]
gi\|108863081\|gb\|ABG22123.1\|	3.6e-104	73.71	polyprotein [Prunus avium]	[more]
gi\|147859193\|emb\|CAN79684.1\|	1.1e-97	58.16	hypothetical protein VITISV_003855 [Vitis vinifera]	[more]
gi\|108863072\|gb\|ABG22121.1\|	5.6e-97	68.53	polyprotein [Solanum melongena]	[more]
gi\|1012342160\|gb\|KYP53356.1\|	6.2e-96	55.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012340.1	CmaCh09G012340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..53 score: 5.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..223 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012340	Cucumber (Chinese Long) v3	cmacucB0037
CmaCh09G012340	Watermelon (97103) v2	cmawmbB036
CmaCh09G012340	Wax gourd	cmawgoB0012
CmaCh09G012340	Cucurbita maxima (Rimu)	cmacmaB046
CmaCh09G012340	Cucumber (Gy14) v1	cgycmaB0087
CmaCh09G012340	Cucurbita moschata (Rifu)	cmacmoB029
CmaCh09G012340	Cucurbita moschata (Rifu)	cmacmoB043
CmaCh09G012340	Wild cucumber (PI 183967)	cmacpiB030
CmaCh09G012340	Cucumber (Chinese Long) v2	cmacuB030
CmaCh09G012340	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012340	Watermelon (Charleston Gray)	cmawcgB030
CmaCh09G012340	Watermelon (97103) v1	cmawmB015
CmaCh09G012340	Cucurbita pepo (Zucchini)	cmacpeB056
CmaCh09G012340	Cucurbita pepo (Zucchini)	cmacpeB062
CmaCh09G012340	Bottle gourd (USVL1VR-Ls)	cmalsiB033
CmaCh09G012340	Cucumber (Gy14) v2	cgybcmaB579
CmaCh09G012340	Melon (DHL92) v3.6.1	cmamedB011
CmaCh09G012340	Silver-seed gourd	carcmaB0061