CmaCh09G012250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPutative proline-rich protein 21
LocationCma_Chr09 : 8143736 .. 8146377 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCACAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCGCCTCGTATGTAGCATTTGTGCGAGCTACTCCAAGTTGTGAACAACCCTTTTACATATAATTCTATATTATAATTTGTTAGTGTTTTTATGTGATCATCTACTTACTAATATGTTGCTATGATGCACCACGTAATATCAAGTATGTATGAAATTTTCGTCTCAATGGGAGTTTCATGACCCTATACCATGATTTTATATGCAGAACCTTATGCACATTGTATGTCACAAACATCGATTACTTTTCTAGTATATTACATACAGACGCATACATTACAATATGATACACACTCCTTTTCTTTCAGTTGGTTTTCGACAACGTGAGTGTACATTAGCCTGTCGTCAGGCCTAAGAGGTATGTGTTAAGATCGCACAACATCGCACACACTCGGATGAACACAAAAAACAGAAAAGAGAAAACCTCTTGCATAGCTATTTACTATTTATGACAATTTGTCTGACAATTTATTTATATGTCATTTACCACTTTAGTACGCATAAGGTTGGCCAAGCTATAAATAAGCATGAGACTCCATAACCTATCAGTAGAGTACGTATAGCTTTACTATGTATAACAGTTGACTAAGCTATAAATAAGCATCAAGCTCTATAACCTAACAGTACGTATACGAGCGTGCATATAGAAGTACTATGCATCTAACCATACCCAAAAACGAAAGTAGAGTTTAAGGAATAGTCATAAAAAGAAACCATGTTGCATGTGATTGCATTTCTCGACTCCAACGGTTGAGTCACTTAATATTTTTAATCACCCGCCTTACATCTAACATTTTTCTAAATAAGGCAAGGGCCCTATGTACGGATGATGGCATTAGCCGAGAAAGCCATGGAATCAAGTCCAATTAATTAATTTTCGGCATTTAGGTCATAGTCCTTAAAAATCGAAACATTGGCTGTACTATCATGTGTGTAAAGTTTGGGTAGCATTCCGATCTTAAGAAAAGTCGTCCTGCTTGACCAAATATCCTCTAATGTACCAAGCTTTCAATCACTCTGTTAGATTCAAGCCATGTCTCTCACTAACTTCTCTTTCTTAGTAGACAGGGTAGAGAATGAATGTGCTTGGGAGTCCCTTACAACATTAGGAAAACAATTCAATCCCATGGTAGAAGAGAACAAGAAAAGCTCATACCAACGAGGAACCATCCTTTTTTGGGGCGGAAGGACTCGGCAGAAGACCGGGGTTTGGAGGGAACTACTAAAGGGATATGCATAAAAAGGTCCTTCGATGAAAGTCTCATAGGCTAATTTAGGAAATTATCATGAGTTTATAATCAATGAATACTATCTTCATTGGTACGAGGCTCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTCGACAATATTATACCATTGTGGAGAGTCATGTTCAACTAATATGATATTAGAGTCATGCCCTAAACTTAGCCATGTCAATAGAATACTCAAATGTTGAACAAAGTATCGTGAGTTTCAAAGGCATAGTCAAAAGTGGCTAAAGCATCGAACAAAAGAGTATACTTTCTTCGAACTGACTTTAATTATTGAAATATATTTGGTTCATAATAATTAAATAATTAAGATAGGAAAGAAAATAAATAAAACTCTGATTCTCATCATAATAACATCATATCCGCCTTTGATGGCAGACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

mRNA sequence

ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

Coding sequence (CDS)

ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

Protein sequence

MCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLCLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLCLTLEEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPLRRQISYHCLHFSGYAP
Homology
[Close]
BLAST of CmaCh09G012250 vs. TrEMBL
Match: A0A0P0WYN8_ORYSJ (Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0614050 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           EE+  + RQ   + RV EQ+++   RHH +RR V+ +   + EDDE+ R P +PPP+ RL
Sbjct: 13  EEVAGHRRQAAAEPRVAEQVEAGDERHHPERRHVEHDGGDEAEDDEEARRPRVPPPQQRL 72

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            P PLRR ++ H L+  G AP
Sbjct: 73  QPLPLRRHVADHRLYPPGDAP 93

[Close]
BLAST of CmaCh09G012250 vs. TrEMBL
Match: A0A0P0WH06_ORYSJ (Os04g0691750 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0691750 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.9e-08
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 229 NGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPL 288
           +GR L  ++R+ E++Q   +RHHL+RRDV+ +R  +RE DE      + P E RL   PL
Sbjct: 1   DGRLLAAEARMAEEVQPHHHRHHLERRDVEHHRDDEREQDEDGGGTGVAPAEQRLGALPL 60

Query: 289 RRQISYHCLHFSGYAP 305
           R Q+++H LH  G+AP
Sbjct: 61  RGQVTHHRLHPPGHAP 76

[Close]
BLAST of CmaCh09G012250 vs. NCBI nr
Match: gi|937923701|dbj|BAS98618.1| (Os06g0614050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 69.7 bits (169), Expect = 9.9e-09
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           EE+  + RQ   + RV EQ+++   RHH +RR V+ +   + EDDE+ R P +PPP+ RL
Sbjct: 13  EEVAGHRRQAAAEPRVAEQVEAGDERHHPERRHVEHDGGDEAEDDEEARRPRVPPPQQRL 72

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            P PLRR ++ H L+  G AP
Sbjct: 73  QPLPLRRHVADHRLYPPGDAP 93

[Close]
BLAST of CmaCh09G012250 vs. NCBI nr
Match: gi|937916870|dbj|BAS91789.1| (Os04g0691750, partial [Oryza sativa Japonica Group])

HSP 1 Score: 66.6 bits (161), Expect = 8.4e-08
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 229 NGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPL 288
           +GR L  ++R+ E++Q   +RHHL+RRDV+ +R  +RE DE      + P E RL   PL
Sbjct: 1   DGRLLAAEARMAEEVQPHHHRHHLERRDVEHHRDDEREQDEDGGGTGVAPAEQRLGALPL 60

Query: 289 RRQISYHCLHFSGYAP 305
           R Q+++H LH  G+AP
Sbjct: 61  RGQVTHHRLHPPGHAP 76

The following BLAST results are available for this feature:
BLAST of CmaCh09G012250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0WYN8_ORYSJ6.9e-0943.21Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0614050 ... [more]
A0A0P0WH06_ORYSJ5.9e-0843.42Os04g0691750 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0691750 ... [more]
BLAST of CmaCh09G012250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937923701|dbj|BAS98618.1|9.9e-0943.21Os06g0614050, partial [Oryza sativa Japonica Group][more]
gi|937916870|dbj|BAS91789.1|8.4e-0843.42Os04g0691750, partial [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012250.1CmaCh09G012250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012250Watermelon (97103) v2cmawmbB036
CmaCh09G012250Wax gourdcmawgoB0010
CmaCh09G012250Wax gourdcmawgoB0011
CmaCh09G012250Wax gourdcmawgoB0012
CmaCh09G012250Cucurbita maxima (Rimu)cmacmaB046
CmaCh09G012250Cucumber (Gy14) v1cgycmaB0087
CmaCh09G012250Cucumber (Gy14) v1cgycmaB0658
CmaCh09G012250Cucurbita moschata (Rifu)cmacmoB029
CmaCh09G012250Cucurbita moschata (Rifu)cmacmoB043
CmaCh09G012250Wild cucumber (PI 183967)cmacpiB030
CmaCh09G012250Wild cucumber (PI 183967)cmacpiB031
CmaCh09G012250Cucumber (Chinese Long) v2cmacuB030
CmaCh09G012250Melon (DHL92) v3.5.1cmameB010
CmaCh09G012250Melon (DHL92) v3.5.1cmameB011
CmaCh09G012250Watermelon (Charleston Gray)cmawcgB030
CmaCh09G012250Watermelon (97103) v1cmawmB016
CmaCh09G012250Cucurbita pepo (Zucchini)cmacpeB062
CmaCh09G012250Bottle gourd (USVL1VR-Ls)cmalsiB033
CmaCh09G012250Cucumber (Gy14) v2cgybcmaB579
CmaCh09G012250Cucumber (Gy14) v2cgybcmaB580
CmaCh09G012250Melon (DHL92) v3.6.1cmamedB011
CmaCh09G012250Melon (DHL92) v3.6.1cmamedB012
CmaCh09G012250Silver-seed gourdcarcmaB0061
CmaCh09G012250Silver-seed gourdcarcmaB1193
CmaCh09G012250Cucumber (Chinese Long) v3cmacucB0037