CmaCh09G012240 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr09 : 8142800 .. 8143507 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGGCAGGTTGTGATAGGGTTTTTCCAAATGCATACATCGTTGAACCATCGGTAAATCGCGGTGATTCCCGAGAGAAGCAGCATTATCCGATTGAAATTCGCTTTGCTTCTTCTAAGGCTAAACATGTGGTAATCGACATCGAGCATGTACTCCACTGCCTCTCGCCGCAGTGGTGGCTCAGCCCGGGACAACCTAGTCGCTACGATGTTCATCGCGTGGAAGCGGAGTAGATCCATGTGTCGGACAGGGATTGGCTGTAGGTAGTGCATTTTGGGCAGTAATGGCTTCCCGTACTGTGTCAGCATGTTGGCCCAGGCCGTGCAGGTGAATCTTAGAGCCAATTGAAGCTCGCCGTGCTTTTTCAAGCCAGAGGGCTGAAGAACCAACAAGGGGTAATAATGCGTATACACTTTGTCTATCTCTAATGTGGATAATCGAATCCTTACTTTACCGATTCTCTGGTCTTTTGCGTCTTCTTTGCTTCCATTTGTGTGTGCGTTGTCGAATACTCCGATTGTGATTACAGTGCAGGGATCGTAGACTTCCCAGGTGTACTGTTCGTTCCAGCGAGGGGCGAGGGTTTCCAGAAGAGTTCTGGTGCGTACCCATTTGTTGCCGTATTTGGCCACACAGTAAGCATCTGTGGTTTTTCCTTCTTTGCTCTTCATTGGAAGAAGATTTCGAGCGCTCAAAATCCCTAA

mRNA sequence

ATGGACGAGGCAGGTTGTGATAGGGTTTTTCCAAATGCATACATCGTTGAACCATCGGTAAATCGCGGTGATTCCCGAGAGAAGCAGCATTATCCGATTGAAATTCGCTTTGCTTCTTCTAAGGCTAAACATGTGGTAATCGACATCGAGCATGTACTCCACTGCCTCTCGCCGCAGTGGTGGCTCAGCCCGGGACAACCTAGTCGCTACGATGTTCATCGCGTGGAAGCGGATGCAGGGATCGTAGACTTCCCAGGTGTACTGTTCGTTCCAGCGAGGGGCGAGGGTTTCCAGAAGAGTTCTGGTGCGTACCCATTTGTTGCCGTATTTGGCCACACAGTAAGCATCTGTGGTTTTTCCTTCTTTGCTCTTCATTGGAAGAAGATTTCGAGCGCTCAAAATCCCTAA

Coding sequence (CDS)

ATGGACGAGGCAGGTTGTGATAGGGTTTTTCCAAATGCATACATCGTTGAACCATCGGTAAATCGCGGTGATTCCCGAGAGAAGCAGCATTATCCGATTGAAATTCGCTTTGCTTCTTCTAAGGCTAAACATGTGGTAATCGACATCGAGCATGTACTCCACTGCCTCTCGCCGCAGTGGTGGCTCAGCCCGGGACAACCTAGTCGCTACGATGTTCATCGCGTGGAAGCGGATGCAGGGATCGTAGACTTCCCAGGTGTACTGTTCGTTCCAGCGAGGGGCGAGGGTTTCCAGAAGAGTTCTGGTGCGTACCCATTTGTTGCCGTATTTGGCCACACAGTAAGCATCTGTGGTTTTTCCTTCTTTGCTCTTCATTGGAAGAAGATTTCGAGCGCTCAAAATCCCTAA

Protein sequence

MDEAGCDRVFPNAYIVEPSVNRGDSREKQHYPIEIRFASSKAKHVVIDIEHVLHCLSPQWWLSPGQPSRYDVHRVEADAGIVDFPGVLFVPARGEGFQKSSGAYPFVAVFGHTVSICGFSFFALHWKKISSAQNP
Homology
[Close]
BLAST of CmaCh09G012240 vs. TrEMBL
Match: U5D4W2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00070p00139300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1  MDEAGCDRVFPNAYIVEPSVNRGDSREKQHYPIEIRFASSKAKHVVIDIEHVLHCLSPQW 60
          M+E G D V P A I EP  +  D RE +H+P+++  ++++A HV   +EHVL  L  Q 
Sbjct: 1  MEEDGGDGVSPIADIFEPPADARDPREDRHHPLKVSLSAAEAPHVGAGVEHVLDNLLAQG 60

Query: 61 WLSPGQPSRYDVHRVEAD 79
           L   +P R+++H +EA+
Sbjct: 61 GLHAVEPRRHNLHGLEAE 78

[Close]
BLAST of CmaCh09G012240 vs. TrEMBL
Match: A0A0P0WYN8_ORYSJ (Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0614050 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.3e-06
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1 

Query: 9   VFPNAYIVEPSVNRGDSREKQHYPIEIRFASSKAKHVVIDIEHVLHCLSPQWWLSPGQPS 68
           V P A++ EP   RG  RE++    E+  A   A HV + +EHVLH L+PQ  L   QP 
Sbjct: 179 VLPVAHVGEPPRRRGGPREERDGAEEVGLAPPHAPHVGLHVEHVLHHLAPQRRLRAPQPR 238

Query: 69  RYDVHRV 76
           R+D HR+
Sbjct: 239 RHDPHRL 245

[Close]
BLAST of CmaCh09G012240 vs. NCBI nr
Match: gi|548863277|gb|ERN20631.1| (hypothetical protein AMTR_s00070p00139300 [Amborella trichopoda])

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1  MDEAGCDRVFPNAYIVEPSVNRGDSREKQHYPIEIRFASSKAKHVVIDIEHVLHCLSPQW 60
          M+E G D V P A I EP  +  D RE +H+P+++  ++++A HV   +EHVL  L  Q 
Sbjct: 1  MEEDGGDGVSPIADIFEPPADARDPREDRHHPLKVSLSAAEAPHVGAGVEHVLDNLLAQG 60

Query: 61 WLSPGQPSRYDVHRVEAD 79
           L   +P R+++H +EA+
Sbjct: 61 GLHAVEPRRHNLHGLEAE 78

The following BLAST results are available for this feature:
BLAST of CmaCh09G012240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012240 vs. TrEMBL
Match NameE-valueIdentityDescription
U5D4W2_AMBTC2.2e-0738.46Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00070p00139300 PE=4 SV=... [more]
A0A0P0WYN8_ORYSJ9.3e-0643.28Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0614050 ... [more]
BLAST of CmaCh09G012240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548863277|gb|ERN20631.1|3.2e-0738.46hypothetical protein AMTR_s00070p00139300 [Amborella trichopoda][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012240.1CmaCh09G012240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012240Watermelon (97103) v2cmawmbB036
CmaCh09G012240Wax gourdcmawgoB0010
CmaCh09G012240Wax gourdcmawgoB0011
CmaCh09G012240Wax gourdcmawgoB0012
CmaCh09G012240Cucurbita maxima (Rimu)cmacmaB046
CmaCh09G012240Cucumber (Gy14) v1cgycmaB0087
CmaCh09G012240Cucumber (Gy14) v1cgycmaB0658
CmaCh09G012240Cucurbita moschata (Rifu)cmacmoB029
CmaCh09G012240Cucurbita moschata (Rifu)cmacmoB043
CmaCh09G012240Wild cucumber (PI 183967)cmacpiB030
CmaCh09G012240Wild cucumber (PI 183967)cmacpiB031
CmaCh09G012240Cucumber (Chinese Long) v2cmacuB030
CmaCh09G012240Melon (DHL92) v3.5.1cmameB010
CmaCh09G012240Melon (DHL92) v3.5.1cmameB011
CmaCh09G012240Watermelon (Charleston Gray)cmawcgB030
CmaCh09G012240Watermelon (97103) v1cmawmB016
CmaCh09G012240Cucurbita pepo (Zucchini)cmacpeB062
CmaCh09G012240Bottle gourd (USVL1VR-Ls)cmalsiB033
CmaCh09G012240Cucumber (Gy14) v2cgybcmaB579
CmaCh09G012240Cucumber (Gy14) v2cgybcmaB580
CmaCh09G012240Melon (DHL92) v3.6.1cmamedB011
CmaCh09G012240Melon (DHL92) v3.6.1cmamedB012
CmaCh09G012240Silver-seed gourdcarcmaB0061
CmaCh09G012240Silver-seed gourdcarcmaB1193
CmaCh09G012240Cucumber (Chinese Long) v3cmacucB0037