CmaCh09G011860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ycf68
Location	Cma_Chr09 : 7522215 .. 7522971 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTTGAACCGGGGTTTGAAACCAAACTTCTCCTCAGGAGGATAGATGGGTCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTCCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAG

mRNA sequence

ATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAG

Coding sequence (CDS)

ATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAG

Protein sequence

MDSSMCSSAPDPEMWIIQGTLAWRTSPVRPQWENKTEHLTTYLHRPRTTRSPLSFWGDGGIGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP

Homology

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BLAST of CmaCh09G011860 vs. Swiss-Prot
Match: YCF68_EUCGG (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 1  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRPQWENK 36
          MDSSMCSSAPDPEMWIIQGTLAWRTSPVR  +E K
Sbjct: 14 MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETK 48

[Close]

BLAST of CmaCh09G011860 vs. Swiss-Prot
Match: YCF68_MAIZE (Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 35  KTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
           K EHLTT+LHRPRTTRSPLSFWGDGGI P
Sbjct: 80  KMEHLTTHLHRPRTTRSPLSFWGDGGIVP 108

[Close]

BLAST of CmaCh09G011860 vs. Swiss-Prot
Match: YCF68_SACHY (Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 35  KTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
           K EHLTT+LHRPRTTRSPLSFWGDGGI P
Sbjct: 80  KMEHLTTHLHRPRTTRSPLSFWGDGGIVP 108

[Close]

BLAST of CmaCh09G011860 vs. Swiss-Prot
Match: YCF68_SACOF (Uncharacterized protein ycf68 OS=Saccharum officinarum GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 35  KTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
           K EHLTT+LHRPRTTRSPLSFWGDGGI P
Sbjct: 80  KMEHLTTHLHRPRTTRSPLSFWGDGGIVP 108

[Close]

BLAST of CmaCh09G011860 vs. TrEMBL
Match: S8D475_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00251 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 49/69 (71.01%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 66  LKKDLRVSRVGPGGFLNAFFFLLIG---VISQRLAMEEGGNKHTWRAQYNGELYAAFGKD 125
           LKKDLRVSRVGPGG LNAFFFLLIG            E   KHTWRAQYNGELYAAFGKD
Sbjct: 7   LKKDLRVSRVGPGGSLNAFFFLLIGGSYFTKTCQGKAEEAKKHTWRAQYNGELYAAFGKD 66

Query: 126 ESLPKRNLL 132
           ESLP +  L
Sbjct: 67  ESLPNKESL 75

[Close]

BLAST of CmaCh09G011860 vs. TrEMBL
Match: A0A0D2ZV57_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.6e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 100 EGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP 140
           EGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP
Sbjct: 315 EGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP 354

[Close]

BLAST of CmaCh09G011860 vs. TrEMBL
Match: G7JVL4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g006040 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 53/112 (47.32%), Postives = 56/112 (50.00%), Query Frame = 1


Query: 1   MDSSMCSSAPDPEMWIIQGTLAWR---------------TSPVR-----PQW-------- 60
           +DSSMCSSAPDPEMWIIQGTL  R               T  +R     P W        
Sbjct: 124 IDSSMCSSAPDPEMWIIQGTLEDRWGDSGEIQCRSNFLFTRGIRAVQGGPSWLLSSREFI 183

Query: 61  ---------------------ENKTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
                                + KTEHLTTYLHRPRTTRSPLSFWGDGGI P
Sbjct: 184 HPLSVYGQLSLEHRFRFGLNRKRKTEHLTTYLHRPRTTRSPLSFWGDGGIVP 235

[Close]

BLAST of CmaCh09G011860 vs. TrEMBL
Match: K4D765_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 5  MCSSAPDPEMWIIQGTLAWRTSPVRPQWENKTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
          MCS+APD EM IIQGTL WRT PV    + + EHLTT+LHRPRTTRSP SFWGD GI P
Sbjct: 1  MCSTAPDLEMCIIQGTLVWRTPPV----QTEMEHLTTHLHRPRTTRSPHSFWGDEGIVP 55

[Close]

BLAST of CmaCh09G011860 vs. TrEMBL
Match: A0A0C5GFT8_IPOBA (Hypothetical chloroplast RF68 OS=Ipomoea batatas GN=ycf68 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.3e-10
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 28 VRPQWENKTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
          VRPQWE K EHLTT+LHRPRTTRS LSFWGDGGI P
Sbjct: 63 VRPQWEKKMEHLTTHLHRPRTTRSTLSFWGDGGIVP 98

[Close]

BLAST of CmaCh09G011860 vs. NCBI nr
Match: gi|757609150|ref|WP_042854973.1| (hypothetical protein [Staphylococcus aureus])

HSP 1 Score: 122.5 bits (306), Expect = 5.9e-25
Identity = 65/79 (82.28%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 66  LKKDLRVSRVGPGGFLNA-FFFLLIGVISQRL----AMEEGGNKHTWRAQYNGELYAAFG 125
           LKKDLRV RVGP G LNA FFFL IGVIS         EEGGNKHTWRAQYNGELYAAFG
Sbjct: 5   LKKDLRVFRVGPRGSLNALFFFLPIGVISYFTNTCHGKEEGGNKHTWRAQYNGELYAAFG 64

Query: 126 KDESLPKRNLLILSQLVGP 140
           KDESLPKRNLLILSQLVGP
Sbjct: 65  KDESLPKRNLLILSQLVGP 83

[Close]

BLAST of CmaCh09G011860 vs. NCBI nr
Match: gi|527209925|gb|EPS74534.1| (hypothetical protein M569_00251, partial [Genlisea aurea])

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 49/69 (71.01%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 66  LKKDLRVSRVGPGGFLNAFFFLLIG---VISQRLAMEEGGNKHTWRAQYNGELYAAFGKD 125
           LKKDLRVSRVGPGG LNAFFFLLIG            E   KHTWRAQYNGELYAAFGKD
Sbjct: 7   LKKDLRVSRVGPGGSLNAFFFLLIGGSYFTKTCQGKAEEAKKHTWRAQYNGELYAAFGKD 66

Query: 126 ESLPKRNLL 132
           ESLP +  L
Sbjct: 67  ESLPNKESL 75

[Close]

BLAST of CmaCh09G011860 vs. NCBI nr
Match: gi|357467739|ref|XP_003604154.1| (ycf68 protein [Medicago truncatula])

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 53/112 (47.32%), Postives = 56/112 (50.00%), Query Frame = 1


Query: 1   MDSSMCSSAPDPEMWIIQGTLAWR---------------TSPVR-----PQW-------- 60
           +DSSMCSSAPDPEMWIIQGTL  R               T  +R     P W        
Sbjct: 124 IDSSMCSSAPDPEMWIIQGTLEDRWGDSGEIQCRSNFLFTRGIRAVQGGPSWLLSSREFI 183

Query: 61  ---------------------ENKTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
                                + KTEHLTTYLHRPRTTRSPLSFWGDGGI P
Sbjct: 184 HPLSVYGQLSLEHRFRFGLNRKRKTEHLTTYLHRPRTTRSPLSFWGDGGIVP 235

[Close]

BLAST of CmaCh09G011860 vs. NCBI nr
Match: gi|772657604|ref|YP_009128439.1| (hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 28 VRPQWENKTEHLTTYLHRPRTTRSPLSFWGDGGIGP 64
          VRPQWE K EHLTT+LHRPRTTRS LSFWGDGGI P
Sbjct: 63 VRPQWEKKMEHLTTHLHRPRTTRSTLSFWGDGGIVP 98

[Close]

BLAST of CmaCh09G011860 vs. NCBI nr
Match: gi|703106143|ref|XP_010098426.1| (hypothetical protein L484_012141 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-09
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 66  LKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAM--EEGGNKH 106
           LKKDLRVSRVGPGG LNAFFFLLIGVISQRLAM  ++GG  H
Sbjct: 5   LKKDLRVSRVGPGGSLNAFFFLLIGVISQRLAMVRKKGGEAH 46

The following BLAST results are available for this feature:

BLAST of CmaCh09G011860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF68_EUCGG	6.3e-11	88.57	Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 ...	[more]
YCF68_MAIZE	1.7e-08	89.66	Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2	[more]
YCF68_SACHY	1.7e-08	89.66	Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1	[more]
YCF68_SACOF	1.7e-08	89.66	Uncharacterized protein ycf68 OS=Saccharum officinarum GN=ycf68-1 PE=3 SV=1	[more]

BLAST of CmaCh09G011860 vs. TrEMBL


Match Name	E-value	Identity	Description
S8D475_9LAMI	2.4e-17	71.01	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00251 PE=4 SV=1	[more]
A0A0D2ZV57_BRAOL	6.6e-15	100.00	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
G7JVL4_MEDTR	2.5e-14	47.32	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g006040 PE=4 SV=1	[more]
K4D765_SOLLC	2.5e-14	71.19	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0C5GFT8_IPOBA	8.3e-10	86.11	Hypothetical chloroplast RF68 OS=Ipomoea batatas GN=ycf68 PE=4 SV=1	[more]

BLAST of CmaCh09G011860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|757609150\|ref\|WP_042854973.1\|	5.9e-25	82.28	hypothetical protein [Staphylococcus aureus]	[more]
gi\|527209925\|gb\|EPS74534.1\|	3.5e-17	71.01	hypothetical protein M569_00251, partial [Genlisea aurea]	[more]
gi\|357467739\|ref\|XP_003604154.1\|	3.6e-14	47.32	ycf68 protein [Medicago truncatula]	[more]
gi\|772657604\|ref\|YP_009128439.1\|	1.2e-09	86.11	hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]	[more]
gi\|703106143\|ref\|XP_010098426.1\|	5.9e-09	83.33	hypothetical protein L484_012141 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011860.1	CmaCh09G011860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..29 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011860	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011860	Cucurbita moschata (Rifu)	cmacmoB044
CmaCh09G011860	Cucurbita moschata (Rifu)	cmacmoB056
CmaCh09G011860	Wild cucumber (PI 183967)	cmacpiB035
CmaCh09G011860	Cucumber (Chinese Long) v2	cmacuB035
CmaCh09G011860	Melon (DHL92) v3.5.1	cmameB029
CmaCh09G011860	Watermelon (Charleston Gray)	cmawcgB035
CmaCh09G011860	Watermelon (Charleston Gray)	cmawcgB039
CmaCh09G011860	Cucurbita pepo (Zucchini)	cmacpeB037
CmaCh09G011860	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011860	Bottle gourd (USVL1VR-Ls)	cmalsiB041
CmaCh09G011860	Cucumber (Gy14) v2	cgybcmaB702
CmaCh09G011860	Cucumber (Gy14) v2	cgybcmaB883
CmaCh09G011860	Melon (DHL92) v3.6.1	cmamedB028
CmaCh09G011860	Cucumber (Chinese Long) v3	cmacucB0043
CmaCh09G011860	Cucumber (Chinese Long) v3	cmacucB0047
CmaCh09G011860	Watermelon (97103) v2	cmawmbB046
CmaCh09G011860	Wax gourd	cmawgoB0019
CmaCh09G011860	Cucurbita maxima (Rimu)	cmacmaB050
CmaCh09G011860	Cucurbita maxima (Rimu)	cmacmaB056
CmaCh09G011860	Cucumber (Gy14) v1	cgycmaB0902