CmaCh09G011690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G011690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_88
LocationCma_Chr09 : 6958868 .. 6959297 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTTGCAACACTAAGATTATTAAAAAAAAACCCAATTGTTTTGCAATCAAAACATTTGGTGAAAATTTTGATATGAATCATGAAGAACAACAACAGCCTATGTTTCTTGTCATGTTGGTGAATGTTCTTTCCAATGTAAGGATATGGGATGCATTGCATAGGGTTAAGAACAACTCGATTTTCAACCATGTTTTGGGAGTTGGTTCTTTTAATGATTGTGATGTTTGTGAGACAAAGATTGAATTATCATCCGACAATGATTTGTTTTGTGGTTTGAATGAATCTCAAGTTGGAGCTGTTCGGACATGTCTTGAAAAGACATGTTGTTGTTTGAGTTTTGGAAGAATAATAGTCAGAAGCTCGCCTGTACTCCGACGAACACGGTGATCATGTAGGTGGCATCGATGTTTCTTCTTTTGGTTAA

mRNA sequence

ATGGACTTTTGCAACACTAAGATTATTAAAAAAAAACCCAATTGTTTTGCAATCAAAACATTTGGTGAAAATTTTGATATGAATCATGAAGAACAACAACAGCCTATGTTTCTTGTCATGTTGGTGAATGTTCTTTCCAATGTAAGGATATGGGATGCATTGCATAGGGTTAAGAACAACTCGATTTTCAACCATGTTTTGGGAGTTGGTTCTTTTAATGATTGTGATGTTTGTGAGACAAAGATTGAATTATCATCCGACAATGATTTGTTTTGTGGTTTGAATGAATCTCAAGTTGGAGCTTCAGAAGCTCGCCTGTACTCCGACGAACACGGTGATCATGTAGGTGGCATCGATGTTTCTTCTTTTGGTTAA

Coding sequence (CDS)

ATGGACTTTTGCAACACTAAGATTATTAAAAAAAAACCCAATTGTTTTGCAATCAAAACATTTGGTGAAAATTTTGATATGAATCATGAAGAACAACAACAGCCTATGTTTCTTGTCATGTTGGTGAATGTTCTTTCCAATGTAAGGATATGGGATGCATTGCATAGGGTTAAGAACAACTCGATTTTCAACCATGTTTTGGGAGTTGGTTCTTTTAATGATTGTGATGTTTGTGAGACAAAGATTGAATTATCATCCGACAATGATTTGTTTTGTGGTTTGAATGAATCTCAAGTTGGAGCTTCAGAAGCTCGCCTGTACTCCGACGAACACGGTGATCATGTAGGTGGCATCGATGTTTCTTCTTTTGGTTAA

Protein sequence

MDFCNTKIIKKKPNCFAIKTFGENFDMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVLGVGSFNDCDVCETKIELSSDNDLFCGLNESQVGASEARLYSDEHGDHVGGIDVSSFG
Homology
[Close]
BLAST of CmaCh09G011690 vs. TrEMBL
Match: A0A0A0K415_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291110 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = 1 

Query: 12  KPNCFAIKTFGENF--DMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVLGV 71
           KP CF IKT+ ENF  D+NH E   P FLV+LVNVL+NVRIW+ALH  KNN+IFNHVLGV
Sbjct: 175 KPTCFTIKTWKENFMKDLNHHEH--PTFLVVLVNVLTNVRIWNALHMKKNNAIFNHVLGV 234

Query: 72  GSFND-----CDVCETKI-ELSSDNDLFCGLNESQVGA 102
            SFN      CDVCETKI ELSS + LFC LNESQ  A
Sbjct: 235 TSFNSNLNFGCDVCETKIEELSSKSSLFCTLNESQARA 270

[Close]
BLAST of CmaCh09G011690 vs. TrEMBL
Match: A0A0A0K7S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G276680 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 13  PNCFAIKTFGENFD--MNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNS--------- 72
           P  F++KT+ ++F+  M+ + + +PMFLV+LVNVLSN+RIW+ALH +K  S         
Sbjct: 116 PTRFSVKTWNKDFEIPMDEKTKNKPMFLVILVNVLSNIRIWNALHMIKRTSKHSSASSSM 175

Query: 73  IFNHVLGV-GSFND----CDVCETKI--ELSSDNDLFCGLNESQVGA 102
           IFN VLG+  S N+    CD CE ++    S ++DLF  LNE Q  A
Sbjct: 176 IFNQVLGLKDSCNNLDFSCDACEAEVGMSFSHNDDLFSTLNEPQARA 222

[Close]
BLAST of CmaCh09G011690 vs. TrEMBL
Match: V4SAF2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004337mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-07
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1 

Query: 11  KKPNCFAIKTFGENFDMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVLGVG 70
           KK NC+ +K    N    H+  ++P FL+ L N+L N RIW++LH   N  +   VLG  
Sbjct: 86  KKENCYKVKA--RNDLQVHDGTKKPFFLIYLTNILPNKRIWNSLHMRGNWKVITQVLGTD 145

Query: 71  SFND--CDVCETKIELSSDN----DLFCGLNESQVGASEARLYSDEHGDHVGGIDV 121
           S  D  C++C  +     D      L   LNESQVGA  A L   +  DH  G+++
Sbjct: 146 SVVDERCELCPVQRNGKWDEKFGPSLSSTLNESQVGAVFACLRRLD-CDHKSGVEL 198

[Close]
BLAST of CmaCh09G011690 vs. NCBI nr
Match: gi|700189207|gb|KGN44440.1| (hypothetical protein Csa_7G291110 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = 1 

Query: 12  KPNCFAIKTFGENF--DMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVLGV 71
           KP CF IKT+ ENF  D+NH E   P FLV+LVNVL+NVRIW+ALH  KNN+IFNHVLGV
Sbjct: 175 KPTCFTIKTWKENFMKDLNHHEH--PTFLVVLVNVLTNVRIWNALHMKKNNAIFNHVLGV 234

Query: 72  GSFND-----CDVCETKI-ELSSDNDLFCGLNESQVGA 102
            SFN      CDVCETKI ELSS + LFC LNESQ  A
Sbjct: 235 TSFNSNLNFGCDVCETKIEELSSKSSLFCTLNESQARA 270

[Close]
BLAST of CmaCh09G011690 vs. NCBI nr
Match: gi|659123169|ref|XP_008461528.1| (PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 7.6e-24
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 10  KKKPNCFAIKTFGENF--DMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVL 69
           K KP CF IK + ENF  D+NH E   PMFLV+LVNVL+N+RIW+ALH  KNN+IFNHVL
Sbjct: 82  KNKPTCFTIKIWKENFMKDLNHHEH--PMFLVVLVNVLTNIRIWNALHMKKNNAIFNHVL 141

Query: 70  GVGSFND-----CDVCETKI-ELSSDNDLFCGLNESQVGA 102
           GV S N      CDVCETKI ELSS+N LF  LNESQ  A
Sbjct: 142 GVNSSNSNLNFGCDVCETKIDELSSNNSLFFTLNESQARA 179

[Close]
BLAST of CmaCh09G011690 vs. NCBI nr
Match: gi|778730286|ref|XP_011659750.1| (PREDICTED: regulator of nonsense transcripts 1 homolog [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 13  PNCFAIKTFGENFD--MNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNS--------- 72
           P  F++KT+ ++F+  M+ + + +PMFLV+LVNVLSN+RIW+ALH +K  S         
Sbjct: 116 PTRFSVKTWNKDFEIPMDEKTKNKPMFLVILVNVLSNIRIWNALHMIKRTSKHSSASSSM 175

Query: 73  IFNHVLGV-GSFND----CDVCETKI--ELSSDNDLFCGLNESQVGA 102
           IFN VLG+  S N+    CD CE ++    S ++DLF  LNE Q  A
Sbjct: 176 IFNQVLGLKDSCNNLDFSCDACEAEVGMSFSHNDDLFSTLNEPQARA 222

[Close]
BLAST of CmaCh09G011690 vs. NCBI nr
Match: gi|700189149|gb|KGN44382.1| (hypothetical protein Csa_7G276680 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 13  PNCFAIKTFGENFD--MNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNS--------- 72
           P  F++KT+ ++F+  M+ + + +PMFLV+LVNVLSN+RIW+ALH +K  S         
Sbjct: 116 PTRFSVKTWNKDFEIPMDEKTKNKPMFLVILVNVLSNIRIWNALHMIKRTSKHSSASSSM 175

Query: 73  IFNHVLGV-GSFND----CDVCETKI--ELSSDNDLFCGLNESQVGA 102
           IFN VLG+  S N+    CD CE ++    S ++DLF  LNE Q  A
Sbjct: 176 IFNQVLGLKDSCNNLDFSCDACEAEVGMSFSHNDDLFSTLNEPQARA 222

[Close]
BLAST of CmaCh09G011690 vs. NCBI nr
Match: gi|567855143|ref|XP_006420691.1| (hypothetical protein CICLE_v10004337mg [Citrus clementina])

HSP 1 Score: 62.0 bits (149), Expect = 8.4e-07
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1 

Query: 11  KKPNCFAIKTFGENFDMNHEEQQQPMFLVMLVNVLSNVRIWDALHRVKNNSIFNHVLGVG 70
           KK NC+ +K    N    H+  ++P FL+ L N+L N RIW++LH   N  +   VLG  
Sbjct: 86  KKENCYKVKA--RNDLQVHDGTKKPFFLIYLTNILPNKRIWNSLHMRGNWKVITQVLGTD 145

Query: 71  SFND--CDVCETKIELSSDN----DLFCGLNESQVGASEARLYSDEHGDHVGGIDV 121
           S  D  C++C  +     D      L   LNESQVGA  A L   +  DH  G+++
Sbjct: 146 SVVDERCELCPVQRNGKWDEKFGPSLSSTLNESQVGAVFACLRRLD-CDHKSGVEL 198

The following BLAST results are available for this feature:
BLAST of CmaCh09G011690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G011690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K415_CUCSA1.1e-2467.35Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291110 PE=4 SV=1[more]
A0A0A0K7S2_CUCSA2.7e-1243.93Uncharacterized protein OS=Cucumis sativus GN=Csa_7G276680 PE=4 SV=1[more]
V4SAF2_9ROSI5.9e-0736.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004337mg PE=4 SV=1[more]
BLAST of CmaCh09G011690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G011690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189207|gb|KGN44440.1|1.5e-2467.35hypothetical protein Csa_7G291110 [Cucumis sativus][more]
gi|659123169|ref|XP_008461528.1|7.6e-2465.00PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo][more]
gi|778730286|ref|XP_011659750.1|3.9e-1243.93PREDICTED: regulator of nonsense transcripts 1 homolog [Cucumis sativus][more]
gi|700189149|gb|KGN44382.1|3.9e-1243.93hypothetical protein Csa_7G276680 [Cucumis sativus][more]
gi|567855143|ref|XP_006420691.1|8.4e-0736.21hypothetical protein CICLE_v10004337mg [Citrus clementina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G011690.1CmaCh09G011690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G011690CsGy7G011490Cucumber (Gy14) v2cgybcmaB883
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G011690Watermelon (97103) v2cmawmbB049
CmaCh09G011690Cucurbita maxima (Rimu)cmacmaB050
CmaCh09G011690Cucurbita maxima (Rimu)cmacmaB056
CmaCh09G011690Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G011690Cucurbita moschata (Rifu)cmacmoB044
CmaCh09G011690Watermelon (Charleston Gray)cmawcgB008
CmaCh09G011690Watermelon (97103) v1cmawmB010
CmaCh09G011690Cucurbita pepo (Zucchini)cmacpeB025
CmaCh09G011690Cucurbita pepo (Zucchini)cmacpeB046
CmaCh09G011690Cucurbita pepo (Zucchini)cmacpeB063