CmaCh09G011620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr09 : 6791543 .. 6792058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGGAAAAAACTAGACAAGGATTTAGAGTCGAAAATTATGGAAATGTCAAGGGAGAAGACTGAAAAATCCAACGCCATTGGGAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTTTAGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTGTGGATGCTAATTGGGCTGGTGACATGAACGATAGATGCTCCACAAGAGGTTTTTGTTTTATAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAGAGCAAAGCATCGTTTCTTTGTCATGTTGTGAAGCAGAATATGTAGGTGCTAGAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAAGGGTGACTACTCATTATCATTTGTTTGAGAGAATGCTAACGCAGGATGTTGAATTGTAG

mRNA sequence

ATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGGAAAAAACTAGACAAGGATTTAGAGTCGAAAATTATGGAAATGTCAAGGGAGAAGACTGAAAAATCCAACGCCATTGGGAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTTTAGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTGTGGATGCTAATTGGGCTGGTGACATGAACGATAGATGCTCCACAAGAGGTTTTTGTTTTATAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAGAGCAAAGCATCGTTTCTTTGTCATGTTGTGAAGCAGAATATGTAGGTGCTAGAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAAGGGTGACTACTCATTATCATTTGTTTGAGAGAATGCTAACGCAGGATGTTGAATTGTAG

Coding sequence (CDS)

ATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGGAAAAAACTAGACAAGGATTTAGAGTCGAAAATTATGGAAATGTCAAGGGAGAAGACTGAAAAATCCAACGCCATTGGGAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTTTAGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTGTGGATGCTAATTGGGCTGGTGACATGAACGATAGATGCTCCACAAGAGGTTTTTGTTTTATAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAGAGCAAAGCATCGTTTCTTTGTCATGTTGTGAAGCAGAATATGTAGGTGCTAGAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAAGGGTGACTACTCATTATCATTTGTTTGAGAGAATGCTAACGCAGGATGTTGAATTGTAG

Protein sequence

MVRPREEVLAEKGHDWKKLDKDLESKIMEMSREKTEKSNAIGKKSFGNGIGQAAEDKTERSWRKPSFNNFRPVGRGAEPDKNPSGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFLWLIRRLIQERVTTHYHLFERMLTQDVEL

Homology

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BLAST of CmaCh09G011620 vs. Swiss-Prot
Match: IF4B3_ARATH (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 3   RPREEVLAEKGHDWKKLDKDLESKIMEMSREKTEKSN--AIGKKSFGNGIGQAAEDKTER 62
           RPREEVLAEKG DWK++D+ LE++ ++      EK N  + GK  FG G G+  E++ ER
Sbjct: 319 RPREEVLAEKGQDWKEIDEKLEAEKLKDIAAAMEKPNEKSTGKMGFGLGNGRKDEERIER 378

Query: 63  SWRK 65
           SWRK
Sbjct: 379 SWRK 382

[Close]

BLAST of CmaCh09G011620 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 85   GFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFLW 144
            G+ DA+ AGD+++R S+ G+ F     AISW SK Q  V+LS  EAEY+ A    +  +W
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236

Query: 145  LIRRLIQE 153
            L +R +QE
Sbjct: 1237 L-KRFLQE 1243

[Close]

BLAST of CmaCh09G011620 vs. TrEMBL
Match: A0A0A0K4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 3   RPREEVLAEKGHDWKKLDKDLESKIMEMS-REKTEKSNAI--GKKSFGNGIGQAAEDKTE 62
           RPREEVLAEKGHDWKKLD+ LESKI E+S  EKTEKSN I   K+SFGNG  +AAED+TE
Sbjct: 283 RPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNPIFFRKRSFGNGNSRAAEDRTE 342

Query: 63  RSWRKP 66
           RSWRKP
Sbjct: 343 RSWRKP 348

[Close]

BLAST of CmaCh09G011620 vs. TrEMBL
Match: A0A151SME3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002148 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 77  AEPDKNPSGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGAR 136
           + P+ N  G+ DA+W GD  DR ST G+ F+ G   ISWCS++QS+V+LS CEAEY+ A 
Sbjct: 130 SSPNHNMVGYSDADWCGDKADRKSTTGYVFMLGDAPISWCSRKQSVVALSSCEAEYIAAS 189

Query: 137 MATQGFLWLIRRLIQERVT 156
           M     LWL   L++E  T
Sbjct: 190 MGACQALWL-ETLLEELKT 207

[Close]

BLAST of CmaCh09G011620 vs. TrEMBL
Match: A0A151QP43_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047370 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 77   AEPDKNPSGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGAR 136
            + P+ N  G+ DA+W GD  DR ST G+ F+ G   ISWCS++QS+V+LS CEAEY+ A 
Sbjct: 1041 SSPNHNMVGYSDADWCGDKADRKSTTGYVFMLGDAPISWCSRKQSVVALSSCEAEYIAAS 1100

Query: 137  MATQGFLWLIRRLIQERVT 156
            M     LWL   L++E  T
Sbjct: 1101 MGACQALWL-ETLLEELKT 1118

[Close]

BLAST of CmaCh09G011620 vs. TrEMBL
Match: A0A151TIQ1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_013223 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 79  PDKNPSGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMA 138
           P+ N  G+ DA+W GD  DR ST G+ F+ G   ISWCS++QS+V LS CEAEY+ A M 
Sbjct: 699 PNHNMVGYSDADWCGDKADRKSTTGYVFMLGDAPISWCSRKQSVVPLSSCEAEYIAASMG 758

Query: 139 TQGFLWLIRRLIQERVTT 157
               LWL   L + ++ T
Sbjct: 759 ACQALWLETLLEELKIET 776

[Close]

BLAST of CmaCh09G011620 vs. TrEMBL
Match: A0A0B4GQ28_9HYPO (Gag-Pol polyprotein OS=Metarhizium guizhouense ARSEF 977 GN=MGU_10801 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 84   SGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFL 143
            +GF D++WAGD   R ST G+ F  GS AISW SK QS  +LS CEAEY+G   AT+  +
Sbjct: 977  TGFTDSDWAGDRETRRSTSGYVFNLGSGAISWSSKRQSSTALSSCEAEYIGQTQATKEAI 1036

Query: 144  WLIRRLIQE 153
            WL RRL++E
Sbjct: 1037 WL-RRLLKE 1044

[Close]

BLAST of CmaCh09G011620 vs. TAIR10
Match: AT4G38710.2 (AT4G38710.2 glycine-rich protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-10
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 3   RPREEVLAEKGHDWKKLDKDLESKIMEMSREKTEKSN--AIGKKSFGNGIGQAAEDKTER 62
           RPREEVLAEKG DWK++D+ LE++ ++      EK N  + GK  FG G G+  E++ ER
Sbjct: 319 RPREEVLAEKGQDWKEIDEKLEAEKLKDIAAAMEKPNEKSTGKMGFGLGNGRKDEERIER 378

Query: 63  SWRK 65
           SWRK
Sbjct: 379 SWRK 382

[Close]

BLAST of CmaCh09G011620 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 86  FVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFLWL 145
           F DA++    + R ST G+C   G+  ISW SK+Q +VS S  EAEY     AT   +WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

[Close]

BLAST of CmaCh09G011620 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 25/63 (39.68%), Postives = 30/63 (47.62%), Query Frame = 1


Query: 82  NPSGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQG 141
           N   F D++WAG  + R ST GFC   G   ISW +K Q  VS S  E EY    +    
Sbjct: 163 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

Query: 142 FLW 145
             W
Sbjct: 223 LTW 225

[Close]

BLAST of CmaCh09G011620 vs. NCBI nr
Match: gi|1000983154|ref|XP_015574276.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 1


Query: 84  SGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFL 143
           +GFVDA WAGD+NDR ST GFCF  GS AISWCSK+Q+ V+LS CEAEY+ A MATQ  +
Sbjct: 215 NGFVDAGWAGDVNDRRSTTGFCFTTGSAAISWCSKKQTTVALSGCEAEYIAATMATQECV 274

Query: 144 WLIRRLIQE--------------------------------RVTTHYHLF-ERMLTQDVE 172
           WL +RL+QE                                 + TH+H   E++LTQD+E
Sbjct: 275 WL-KRLVQELVYTVNYLIPIYCDNESLIKLSKNPVFHAHSKHIETHFHFIREKVLTQDIE 334

[Close]

BLAST of CmaCh09G011620 vs. NCBI nr
Match: gi|449454189|ref|XP_004144838.1| (PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-16
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 3   RPREEVLAEKGHDWKKLDKDLESKIMEMS-REKTEKSNAI--GKKSFGNGIGQAAEDKTE 62
           RPREEVLAEKGHDWKKLD+ LESKI E+S  EKTEKSN I   K+SFGNG  +AAED+TE
Sbjct: 283 RPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNPIFFRKRSFGNGNSRAAEDRTE 342

Query: 63  RSWRKP 66
           RSWRKP
Sbjct: 343 RSWRKP 348

[Close]

BLAST of CmaCh09G011620 vs. NCBI nr
Match: gi|659094279|ref|XP_008447975.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 8.1e-16
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 3   RPREEVLAEKGHDWKKLDKDLESKIMEMS-REKTEKSNAIG--KKSFGNGIGQAAEDKTE 62
           RPREEVLAEKGHDWKKLD+ LESKI E+S  EKTEKSNAI   K+SF NG  +AAED+TE
Sbjct: 286 RPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNAISFRKRSFDNGNSRAAEDRTE 345

Query: 63  RSWRKP 66
           +SWRKP
Sbjct: 346 KSWRKP 351

[Close]

BLAST of CmaCh09G011620 vs. NCBI nr
Match: gi|1000984444|ref|XP_015578368.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 6.4e-13
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 84  SGFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQ 141
           +GFVDA+WAGD+NDR ST  +CF  GS A+SW SK+Q+ V+LS CEAEYV A MATQ
Sbjct: 90  TGFVDADWAGDVNDRRSTTRYCFNTGSAAVSWYSKKQTTVALSSCEAEYVAATMATQ 146

[Close]

BLAST of CmaCh09G011620 vs. NCBI nr
Match: gi|1000943482|ref|XP_015581919.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 85  GFVDANWAGDMNDRCSTRGFCFIAGSVAISWCSKEQSIVSLSCCEAEYVGARMATQGFLW 144
           GF DA+WAGD +DR ST G+CF  GS  +SWCSK+Q  V+LS  EAEY+ A MA Q  +W
Sbjct: 195 GFTDADWAGDASDRRSTSGYCFNIGSAVVSWCSKKQPTVALSSTEAEYMAATMAAQECIW 254

Query: 145 L 146
           L
Sbjct: 255 L 255

The following BLAST results are available for this feature:

BLAST of CmaCh09G011620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF4B3_ARATH	1.6e-08	51.56	Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 P...	[more]
POLX_TOBAC	1.8e-07	44.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmaCh09G011620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M1_CUCSA	2.5e-16	77.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1	[more]
A0A151SME3_CAJCA	6.4e-12	48.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151QP43_CAJCA	6.4e-12	48.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TIQ1_CAJCA	1.1e-11	47.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A0B4GQ28_9HYPO	3.2e-11	55.07	Gag-Pol polyprotein OS=Metarhizium guizhouense ARSEF 977 GN=MGU_10801 PE=4 SV=1	[more]

BLAST of CmaCh09G011620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38710.2	9.2e-10	51.56	glycine-rich protein	[more]
AT4G23160.1	2.5e-07	43.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.1e-06	39.68	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmaCh09G011620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1000983154\|ref\|XP_015574276.1\|	1.0e-18	46.28	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communi...	[more]
gi\|449454189\|ref\|XP_004144838.1\|	3.6e-16	77.27	PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus]	[more]
gi\|659094279\|ref\|XP_008447975.1\|	8.1e-16	75.76	PREDICTED: dentin sialophosphoprotein-like [Cucumis melo]	[more]
gi\|1000984444\|ref\|XP_015578368.1\|	6.4e-13	66.67	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communi...	[more]
gi\|1000943482\|ref\|XP_015581919.1\|	3.2e-12	59.02	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010433	EIF-4B_pln

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011620.1	CmaCh09G011620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010433	Plant specific eukaryotic initiation factor 4B	PFAM	PF06273	eIF-4B	coord: 2..50 score: 8.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 84..160 score: 4.8
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 84..160 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011620	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011620	Cucurbita pepo (Zucchini)	cmacpeB063
CmaCh09G011620	Bottle gourd (USVL1VR-Ls)	cmalsiB017
CmaCh09G011620	Cucumber (Gy14) v2	cgybcmaB883
CmaCh09G011620	Melon (DHL92) v3.6.1	cmamedB016
CmaCh09G011620	Cucumber (Chinese Long) v3	cmacucB0048
CmaCh09G011620	Watermelon (97103) v2	cmawmbB049
CmaCh09G011620	Watermelon (97103) v2	cmawmbB052
CmaCh09G011620	Wax gourd	cmawgoB0039
CmaCh09G011620	Cucurbita maxima (Rimu)	cmacmaB050
CmaCh09G011620	Cucurbita maxima (Rimu)	cmacmaB056
CmaCh09G011620	Cucumber (Gy14) v1	cgycmaB0134
CmaCh09G011620	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011620	Cucurbita moschata (Rifu)	cmacmoB044
CmaCh09G011620	Wild cucumber (PI 183967)	cmacpiB039
CmaCh09G011620	Cucumber (Chinese Long) v2	cmacuB039
CmaCh09G011620	Melon (DHL92) v3.5.1	cmameB016
CmaCh09G011620	Watermelon (Charleston Gray)	cmawcgB008
CmaCh09G011620	Watermelon (Charleston Gray)	cmawcgB011
CmaCh09G011620	Watermelon (97103) v1	cmawmB010
CmaCh09G011620	Watermelon (97103) v1	cmawmB013