CmaCh09G011580 (gene) Cucurbita maxima (Rimu)

NameCmaCh09G011580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionEukaryotic translation initiation factor 4H
LocationCma_Chr09 : 6707317 .. 6707901 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTGCTGCATTGGCCTCTGCCATTCATGAAGTTCAGAGGCTCAAGGTCCAGCTGAACATGGTGTCTAAATCCAACCAAACCCGAAGTAACCTCGCTAAGTCTATGGAAAAGCTTCAATCAGATGGAATCAAAACTTTTGAAGCCTACAACTCTTTGTCACCAAAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGATTTTGATTTTTATGGAGGGAAGGGAAGATGCCAGAAAGATTTAAATTCCAGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGATTCGTATGAGAGGAGTAACAGGTATTTGAACGGGGATGATTCATCTAACTCGAAGTGGGGTTTGTCAAGGGTCTTTGATGAAAATAGGAGGAAGAAAGATGAAGGTAATTCTGGCAGCGACGGTGGTGGCAGTCGACCGAAGCTTAATCTGGAGCCACGTACGCTGCCGGTGAATGATGTGAAGTCGTCGAAGATATCAAGGACGACCGCGAGGTCTAAGAATTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGA

mRNA sequence

ATGGATGCTGCTGCATTGGCCTCTGCCATTCATGAAGTTCAGAGGCTCAAGGTCCAGCTGAACATGGTGTCTAAATCCAACCAAACCCGAAGTAACCTCGCTAAGTCTATGGAAAAGCTTCAATCAGATGGAATCAAAACTTTTGAAGCCTACAACTCTTTGTCACCAAAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGATTTTGATTTTTATGGAGGGAAGGGAAGATGCCAGAAAGATTTAAATTCCAGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGATTCGTATGAGAGGAGTAACAGGTATTTGAACGGGGATGATTCATCTAACTCGAAGTGGGGTTTGTCAAGGGTCTTTGATGAAAATAGGAGGAAGAAAGATGAAGGTAATTCTGGCAGCGACGGTGGTGGCAGTCGACCGAAGCTTAATCTGGAGCCACGTACGCTGCCGGTGAATGATGTGAAGTCGTCGAAGATATCAAGGACGACCGCGAGGTCTAAGAATTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGA

Coding sequence (CDS)

ATGGATGCTGCTGCATTGGCCTCTGCCATTCATGAAGTTCAGAGGCTCAAGGTCCAGCTGAACATGGTGTCTAAATCCAACCAAACCCGAAGTAACCTCGCTAAGTCTATGGAAAAGCTTCAATCAGATGGAATCAAAACTTTTGAAGCCTACAACTCTTTGTCACCAAAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGATTTTGATTTTTATGGAGGGAAGGGAAGATGCCAGAAAGATTTAAATTCCAGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGATTCGTATGAGAGGAGTAACAGGTATTTGAACGGGGATGATTCATCTAACTCGAAGTGGGGTTTGTCAAGGGTCTTTGATGAAAATAGGAGGAAGAAAGATGAAGGTAATTCTGGCAGCGACGGTGGTGGCAGTCGACCGAAGCTTAATCTGGAGCCACGTACGCTGCCGGTGAATGATGTGAAGTCGTCGAAGATATCAAGGACGACCGCGAGGTCTAAGAATTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGA

Protein sequence

MDAAALASAIHEVQRLKVQLNMVSKSNQTRSNLAKSMEKLQSDGIKTFEAYNSLSPKLEESKDRNSGRDDFDFYGGKGRCQKDLNSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEGNSGSDGGGSRPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD
BLAST of CmaCh09G011580 vs. Swiss-Prot
Match: IF4B3_ARATH (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 51/120 (42.50%), Postives = 65/120 (54.17%), Query Frame = 1

Query: 86  SSRVGGG--FRNYGSNDSYERS--NRYLNGDDSSNSKWGLSRVFDENRRKKDEG---NSG 145
           SS  GGG  F   GS +S  R+  ++Y  G  S +  WG        RR+++ G    S 
Sbjct: 220 SSNGGGGDRFEKRGSFESLSRNRDSQYGGGGGSESDTWG--------RRREESGAANGSP 279

Query: 146 SDGGGSRPKLNLEPRTLPVNDVK----SSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
              GGSRP+L L+PRTLPV  V+     S +     + K +NPFG  RPREEVLAEKG D
Sbjct: 280 PPSGGSRPRLVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQD 331

BLAST of CmaCh09G011580 vs. TrEMBL
Match: A0A0A0K4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 68/176 (38.64%), Postives = 87/176 (49.43%), Query Frame = 1

Query: 23  VSKSNQTRSNLAKSMEKLQSDGIKTFEAYNSLSPKLE----ESKDRNSGRDDFDFYGGKG 82
           VS  N+  SN A S ++  S      + +      +     E ++R  G  D        
Sbjct: 133 VSDENRRSSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERGLGFSDSQSSKADE 192

Query: 83  RCQKDLNSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEGNSG 142
                 N S +    R +   D   R     +G  + +  WG         RKK+EGN+G
Sbjct: 193 SESWVSNKSNIPSDGRRF---DRERRGGFTASGGGADSDNWG---------RKKEEGNAG 252

Query: 143 SDGGGSRPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
                SRPKL+L+PRTLPV D KSS+IS T ARSK+SNPFG  RPREEVLAEKGHD
Sbjct: 253 GVIS-SRPKLSLQPRTLPVVDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHD 295

BLAST of CmaCh09G011580 vs. TrEMBL
Match: M5VJ47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007168mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1

Query: 95  NYGSNDSYERSNRYL-NGDDSSNSKWGLSRVFDENRRKKDEGNSGSDGGGSRPKLNLEPR 154
           N GS    ER   ++ NG  + +  WG         +KK+E N G      RP+LNL+PR
Sbjct: 215 NGGSGFDRERRVGFVSNGGGADSEVWG---------KKKEESNGGLSESTGRPRLNLQPR 274

Query: 155 TLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
           TLPV++ ++S  S T  +SK SNPFG  RPREEVLAEKG D
Sbjct: 275 TLPVSN-ETSPGSTTVPKSKGSNPFGEARPREEVLAEKGKD 305

BLAST of CmaCh09G011580 vs. TrEMBL
Match: B9HRA2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13280g PE=4 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-09
Identity = 49/105 (46.67%), Postives = 57/105 (54.29%), Query Frame = 1

Query: 91  GGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEG-NSGSDGGGSRPKLN 150
           GGF   GS D+  R     +G  + +  WG         RKKDE  NSGS G   RPKL 
Sbjct: 216 GGFERRGSYDTLSRERHGFSGGAADSDNWG---------RKKDESFNSGSVG--ERPKLK 275

Query: 151 LEPRTLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
           L+PRTLPV+D   +       + K SNPFG  RPREEVL EKG D
Sbjct: 276 LQPRTLPVSDGNGA-----VEKPKGSNPFGDARPREEVLKEKGMD 304

BLAST of CmaCh09G011580 vs. TrEMBL
Match: A0A0B0MIF4_GOSAR (Eukaryotic translation initiation factor 4H OS=Gossypium arboreum GN=F383_21562 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 53/136 (38.97%), Postives = 71/136 (52.21%), Query Frame = 1

Query: 63  DRNSGRDDFDFYGGKGRCQKDLNSS----RVGGGFRNYGSNDSYERSNRYLNGDDSSNSK 122
           D  S  D+ D +    +  K +N++    R GGGF    S DS +R ++     D  N  
Sbjct: 184 DSQSKADEVDNWASN-KSSKSVNAAAPPRRFGGGFERRSSFDSLQRDSQR----DLDN-- 243

Query: 123 WGLSRVFDENRRKKDEGNSGSDGGGSRPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPF 182
           WG         +KK+E  S +  GG RP+L L+PRT+PV   K +K   T  + K +NPF
Sbjct: 244 WG---------KKKEETGSSAGSGGVRPRLVLQPRTVPV--TKEAKKELTAPKPKGANPF 301

Query: 183 GMVRPREEVLAEKGHD 195
           G  RPREEVL EKG D
Sbjct: 304 GEARPREEVLKEKGKD 301

BLAST of CmaCh09G011580 vs. TrEMBL
Match: F6I126_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01950 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 52/132 (39.39%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 68  RDDFDFYGGKGRCQKDL----NSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSR 127
           RD   F+  + R  +      N S      R +G    +E       G DS++   G   
Sbjct: 197 RDRGGFFDSQSRADESASWVSNKSFTPSEGRRFGGGGGFESLRERRGGFDSASDGGG-GA 256

Query: 128 VFDENRRKKDEGNSGSDGG-GSRPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPFGMVR 187
             +   RKK+EG+  ++G  GSRPKL L+PRT+PVND +    S + A+ K  NPFG  R
Sbjct: 257 DSESWGRKKEEGSGNANGSAGSRPKLILQPRTVPVNDGQQPG-SGSVAKPKGPNPFGEAR 316

Query: 188 PREEVLAEKGHD 195
           PREEVLAEKG D
Sbjct: 317 PREEVLAEKGQD 326

BLAST of CmaCh09G011580 vs. TAIR10
Match: AT4G38710.2 (AT4G38710.2 glycine-rich protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 51/120 (42.50%), Postives = 65/120 (54.17%), Query Frame = 1

Query: 86  SSRVGGG--FRNYGSNDSYERS--NRYLNGDDSSNSKWGLSRVFDENRRKKDEG---NSG 145
           SS  GGG  F   GS +S  R+  ++Y  G  S +  WG        RR+++ G    S 
Sbjct: 220 SSNGGGGDRFEKRGSFESLSRNRDSQYGGGGGSESDTWG--------RRREESGAANGSP 279

Query: 146 SDGGGSRPKLNLEPRTLPVNDVK----SSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
              GGSRP+L L+PRTLPV  V+     S +     + K +NPFG  RPREEVLAEKG D
Sbjct: 280 PPSGGSRPRLVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQD 331

BLAST of CmaCh09G011580 vs. NCBI nr
Match: gi|659094279|ref|XP_008447975.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query: 85  NSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEGNSGSDGGGS 144
           N S +  G R +   D   R     +G  + +  WG         RKK+EGN+G   G S
Sbjct: 202 NKSNIPSGGRRF---DRERRGGFTASGGGADSDNWG---------RKKEEGNAGGVIG-S 261

Query: 145 RPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
           RPKL+L+PRTLPV D KSS+IS T ARSK+SNPFG  RPREEVLAEKGHD
Sbjct: 262 RPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHD 298

BLAST of CmaCh09G011580 vs. NCBI nr
Match: gi|449454189|ref|XP_004144838.1| (PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 68/176 (38.64%), Postives = 87/176 (49.43%), Query Frame = 1

Query: 23  VSKSNQTRSNLAKSMEKLQSDGIKTFEAYNSLSPKLE----ESKDRNSGRDDFDFYGGKG 82
           VS  N+  SN A S ++  S      + +      +     E ++R  G  D        
Sbjct: 133 VSDENRRSSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERGLGFSDSQSSKADE 192

Query: 83  RCQKDLNSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEGNSG 142
                 N S +    R +   D   R     +G  + +  WG         RKK+EGN+G
Sbjct: 193 SESWVSNKSNIPSDGRRF---DRERRGGFTASGGGADSDNWG---------RKKEEGNAG 252

Query: 143 SDGGGSRPKLNLEPRTLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
                SRPKL+L+PRTLPV D KSS+IS T ARSK+SNPFG  RPREEVLAEKGHD
Sbjct: 253 GVIS-SRPKLSLQPRTLPVVDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHD 295

BLAST of CmaCh09G011580 vs. NCBI nr
Match: gi|1021476145|ref|XP_016169710.1| (PREDICTED: eukaryotic translation initiation factor 4B1-like [Arachis ipaensis])

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 1

Query: 83  DLNSSRVGGGFRNYGSNDSYERSNRYLNGDDSSNSKWGLSRVFDENRRKKDEGNSGSD-- 142
           D + +R+GGGFRNYG ND   RS+   +GDD+SNS            +KK E N GS+  
Sbjct: 35  DRDRNRLGGGFRNYG-NDRANRSSS--DGDDTSNSN-----------KKKVEFNGGSERS 94

Query: 143 -GGGSRPKLNLEPRTLPVNDVKSSKISR---TTARSKNSNPFGMVRPREEVLAEKGHD 195
            GGG RP+L L+PRT PVN+              + K  +PFG VRPREEVL EKG D
Sbjct: 95  EGGGGRPRLVLQPRTAPVNNESQEGAGNGNGNVVKPKGPSPFGEVRPREEVLVEKGQD 138

BLAST of CmaCh09G011580 vs. NCBI nr
Match: gi|297744651|emb|CBI37913.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 60/152 (39.47%), Postives = 77/152 (50.66%), Query Frame = 1

Query: 75  GGKGRCQKDLNSSRVGGGFRNYGSNDSYERSNRYLN-GDDSSN----------SKWGLSR 134
           G + R  ++L+  R+GGGFR+YGSN S     R    G DSS             WG ++
Sbjct: 75  GPRQRSAEELDRGRLGGGFRSYGSNGSGSEERRQGGFGRDSSRELAPSRADEIDDWGAAK 134

Query: 135 ---------------VFDENRRKK-----DEGNSGSDG-GGSRPKLNLEPRTLPVNDVKS 194
                           FD   R       +EG+  ++G  GSRPKL L+PRT+PVND + 
Sbjct: 135 KSTVGNGFERRDRGGFFDSQSRADESASWEEGSGNANGSAGSRPKLILQPRTVPVNDGQQ 194

BLAST of CmaCh09G011580 vs. NCBI nr
Match: gi|645261258|ref|XP_008236206.1| (PREDICTED: S-antigen protein [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-09
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 1

Query: 95  NYGSNDSYERSNRYL-NGDDSSNSKWGLSRVFDENRRKKDEGNSGSDGGGSRPKLNLEPR 154
           N GS    ER   ++ NG  + +  WG         +KK+E N G + G  RP+LNL+PR
Sbjct: 247 NGGSGFDRERRVGFVSNGGGADSEVWG---------KKKEESNGGLNEGTGRPRLNLQPR 306

Query: 155 TLPVNDVKSSKISRTTARSKNSNPFGMVRPREEVLAEKGHD 195
           TLPV++ ++S  S T  + K SNPFG  RPREEVLAEKG D
Sbjct: 307 TLPVSN-ETSPGSTTVPKPKGSNPFGEARPREEVLAEKGKD 337

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF4B3_ARATH2.2e-0942.50Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 P... [more]
Match NameE-valueIdentityDescription
A0A0A0K4M1_CUCSA1.1e-1238.64Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1[more]
M5VJ47_PRUPE4.4e-0946.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007168mg PE=4 SV=1[more]
B9HRA2_POPTR5.8e-0946.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13280g PE=4 SV=2[more]
A0A0B0MIF4_GOSAR2.9e-0838.97Eukaryotic translation initiation factor 4H OS=Gossypium arboreum GN=F383_21562 ... [more]
F6I126_VITVI6.4e-0839.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01950 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G38710.21.2e-1042.50 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|659094279|ref|XP_008447975.1|1.2e-1552.73PREDICTED: dentin sialophosphoprotein-like [Cucumis melo][more]
gi|449454189|ref|XP_004144838.1|1.6e-1238.64PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus][more]
gi|1021476145|ref|XP_016169710.1|3.0e-1146.61PREDICTED: eukaryotic translation initiation factor 4B1-like [Arachis ipaensis][more]
gi|297744651|emb|CBI37913.3|3.4e-1039.47unnamed protein product [Vitis vinifera][more]
gi|645261258|ref|XP_008236206.1|3.7e-0946.53PREDICTED: S-antigen protein [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010433EIF-4B_pln
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G011580.1CmaCh09G011580.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010433Plant specific eukaryotic initiation factor 4BPFAMPF06273eIF-4Bcoord: 131..194
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None