CmaCh09G011560 (gene) Cucurbita maxima (Rimu)

NameCmaCh09G011560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr09 : 6668838 .. 6669744 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGTTCGTATGAGAGGAGTAACAGGTATTCGATGATTCATCTAACTCGATGTGGGGTTTGTCAAGGGTCTTTGGTGAAAATAGGAGGAAGAAAGATGAAGGTAATTCGGGTAGCGGGGGTGGTGGTAGTCGACCGAAGCTTAATCTGCAGCCACGTACGCTGCCGGTGAATGTGTGAAGTCGTCAAATATATTAGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA

mRNA sequence

ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA

Coding sequence (CDS)

ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA

Protein sequence

MEKLQSDGIKVVEAYNSFSPELEESKDRNSGRDGFDYYGGKGRCQKGLNFGRVGGGFRNYGSNGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSNAIGKKSFGNGIGQAAEDKTERSWRKPSFNNSGPVGRGAEPDKNPSGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAATMATQGFLWLIRRLIQEMVTTHYHFV
BLAST of CmaCh09G011560 vs. Swiss-Prot
Match: IF4B3_ARATH (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-11
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1

Query: 68  RSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSN--AIGKKSFGNG 127
           + K +NPFG  RPREEVLAEK  DWK++D++LE++ ++      EK N  + GK  FG G
Sbjct: 308 KPKGANPFGNARPREEVLAEKGQDWKEIDEKLEAEKLKDIAAAMEKPNEKSTGKMGFGLG 367

Query: 128 IGQAAEDKTERSWRK 141
            G+  E++ ERSWRK
Sbjct: 368 NGRKDEERIERSWRK 382

BLAST of CmaCh09G011560 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1

Query: 161  GFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAATMATQGFLW 220
            G+ DA+ AGD+++R S+ G+ FT    AISW SK    VALS  +AEY+AAT   +  +W
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236

Query: 221  LIRRLIQEM 230
            L +R +QE+
Sbjct: 1237 L-KRFLQEL 1244

BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A0A0K4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 63  NGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVS-GEKTEKSNAI--GK 122
           + T ARSKSSNPFG  RPREEVLAEK HDWKKLD++LESKI EVS  EKTEKSN I   K
Sbjct: 267 SATAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNPIFFRK 326

Query: 123 KSFGNGIGQAAEDKTERSWRKP 142
           +SFGNG  +AAED+TERSWRKP
Sbjct: 327 RSFGNGNSRAAEDRTERSWRKP 348

BLAST of CmaCh09G011560 vs. TrEMBL
Match: W9QKJ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024960 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1

Query: 61  GSNGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSNAIGKK 120
           G   +TA+ K SNPFG  RPREEVLAEK  DWKK+D++L+S  ++  GEK E  ++ G +
Sbjct: 101 GPAASTAKPKGSNPFGEARPREEVLAEKGQDWKKIDEQLDSMKIKEVGEKAEGGSSFGNR 160

Query: 121 SFGNGIGQAAEDKTERSWRKPSFNNSGPVGRGAEPDKNPSGFMDAN 167
           SFG G G+++ D TE SWRKP           AEP+K+  G  + N
Sbjct: 161 SFGIGNGRSS-DHTEMSWRKPDTTEDDASSHSAEPEKDEGGPAEEN 205

BLAST of CmaCh09G011560 vs. TrEMBL
Match: M5VJ47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007168mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1

Query: 65  TTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELES-KIMEVSGEKTEKSNAIGKKSFG 124
           T  +SK SNPFG  RPREEVLAEK  DWKK+D+ELES KI EV+  + + S + GK+SFG
Sbjct: 279 TVPKSKGSNPFGEARPREEVLAEKGKDWKKIDEELESVKIKEVA--ERDHSPSFGKRSFG 338

Query: 125 NGIGQAAEDKTERSWRKPSFNNSGPVGRGAEPDKNPSGFMD 165
            G G+A  D+TER+WRKP   ++ P  + AE +++ S  ++
Sbjct: 339 IGNGRAG-DRTERAWRKPDVADARP--QSAEENESRSSSLE 374

BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A151SME3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002148 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 153 AEPDKNPSGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAAT 212
           + P+ N  G+ DA+W GD  DR ST G+ F  G   ISWCS+K S+VALS C+AEY+AA+
Sbjct: 130 SSPNHNMVGYSDADWCGDKADRKSTTGYVFMLGDAPISWCSRKQSVVALSSCEAEYIAAS 189

Query: 213 MATQGFLWLIRRLIQEMVT 232
           M     LWL   L++E+ T
Sbjct: 190 MGACQALWL-ETLLEELKT 207

BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A151QP43_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047370 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 153  AEPDKNPSGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAAT 212
            + P+ N  G+ DA+W GD  DR ST G+ F  G   ISWCS+K S+VALS C+AEY+AA+
Sbjct: 1041 SSPNHNMVGYSDADWCGDKADRKSTTGYVFMLGDAPISWCSRKQSVVALSSCEAEYIAAS 1100

Query: 213  MATQGFLWLIRRLIQEMVT 232
            M     LWL   L++E+ T
Sbjct: 1101 MGACQALWL-ETLLEELKT 1118

BLAST of CmaCh09G011560 vs. TAIR10
Match: AT4G38710.2 (AT4G38710.2 glycine-rich protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1

Query: 68  RSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSN--AIGKKSFGNG 127
           + K +NPFG  RPREEVLAEK  DWK++D++LE++ ++      EK N  + GK  FG G
Sbjct: 308 KPKGANPFGNARPREEVLAEKGQDWKEIDEKLEAEKLKDIAAAMEKPNEKSTGKMGFGLG 367

Query: 128 IGQAAEDKTERSWRK 141
            G+  E++ ERSWRK
Sbjct: 368 NGRKDEERIERSWRK 382

BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|449454189|ref|XP_004144838.1| (PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 63  NGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVS-GEKTEKSNAI--GK 122
           + T ARSKSSNPFG  RPREEVLAEK HDWKKLD++LESKI EVS  EKTEKSN I   K
Sbjct: 267 SATAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNPIFFRK 326

Query: 123 KSFGNGIGQAAEDKTERSWRKP 142
           +SFGNG  +AAED+TERSWRKP
Sbjct: 327 RSFGNGNSRAAEDRTERSWRKP 348

BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|659094279|ref|XP_008447975.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 1

Query: 63  NGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVS-GEKTEKSNAIG--K 122
           + T ARSKSSNPFG  RPREEVLAEK HDWKKLD++LESKI EVS  EKTEKSNAI   K
Sbjct: 270 SATAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNAISFRK 329

Query: 123 KSFGNGIGQAAEDKTERSWRKPSF--NNSGPVGRGAEPDKNPSG 162
           +SF NG  +AAED+TE+SWRKP        P  R    ++N +G
Sbjct: 330 RSFDNGNSRAAEDRTEKSWRKPESPPPQESPESRPESGEENVNG 373

BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|1000983154|ref|XP_015574276.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis])

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1

Query: 160 SGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAATMATQGFL 219
           +GF+DA WAGDVNDR ST GFCFT GS AISWCSKK + VALS C+AEY+AATMATQ  +
Sbjct: 215 NGFVDAGWAGDVNDRRSTTGFCFTTGSAAISWCSKKQTTVALSGCEAEYIAATMATQECV 274

Query: 220 WLIRRLIQEMVTT 233
           WL +RL+QE+V T
Sbjct: 275 WL-KRLVQELVYT 286

BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|703076253|ref|XP_010090295.1| (hypothetical protein L484_024960 [Morus notabilis])

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1

Query: 61  GSNGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSNAIGKK 120
           G   +TA+ K SNPFG  RPREEVLAEK  DWKK+D++L+S  ++  GEK E  ++ G +
Sbjct: 101 GPAASTAKPKGSNPFGEARPREEVLAEKGQDWKKIDEQLDSMKIKEVGEKAEGGSSFGNR 160

Query: 121 SFGNGIGQAAEDKTERSWRKPSFNNSGPVGRGAEPDKNPSGFMDAN 167
           SFG G G+++ D TE SWRKP           AEP+K+  G  + N
Sbjct: 161 SFGIGNGRSS-DHTEMSWRKPDTTEDDASSHSAEPEKDEGGPAEEN 205

BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|1000984444|ref|XP_015578368.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1

Query: 160 SGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAATMATQ 217
           +GF+DA+WAGDVNDR ST  +CF  GS A+SW SKK + VALS C+AEYVAATMATQ
Sbjct: 90  TGFVDADWAGDVNDRRSTTRYCFNTGSAAVSWYSKKQTTVALSSCEAEYVAATMATQ 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF4B3_ARATH6.3e-1149.33Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 P... [more]
POLX_TOBAC1.3e-0846.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A0A0K4M1_CUCSA1.2e-2175.61Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1[more]
W9QKJ1_9ROSA1.7e-1547.17Uncharacterized protein OS=Morus notabilis GN=L484_024960 PE=4 SV=1[more]
M5VJ47_PRUPE2.1e-1351.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007168mg PE=4 SV=1[more]
A0A151SME3_CAJCA5.2e-1249.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151QP43_CAJCA5.2e-1249.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
Match NameE-valueIdentityDescription
AT4G38710.23.6e-1249.33 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|449454189|ref|XP_004144838.1|1.8e-2175.61PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus][more]
gi|659094279|ref|XP_008447975.1|1.2e-2062.50PREDICTED: dentin sialophosphoprotein-like [Cucumis melo][more]
gi|1000983154|ref|XP_015574276.1|4.4e-2071.23PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communi... [more]
gi|703076253|ref|XP_010090295.1|2.5e-1547.17hypothetical protein L484_024960 [Morus notabilis][more]
gi|1000984444|ref|XP_015578368.1|1.4e-1370.18PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communi... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010433EIF-4B_pln
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G011560.1CmaCh09G011560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010433Plant specific eukaryotic initiation factor 4BPFAMPF06273eIF-4Bcoord: 64..126
score: 8.9
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 160..236
score: 1.6
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 160..236
score: 1.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None