CmaCh09G011560 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGTTCGTATGAGAGGAGTAACAGGTATTCGATGATTCATCTAACTCGATGTGGGGTTTGTCAAGGGTCTTTGGTGAAAATAGGAGGAAGAAAGATGAAGGTAATTCGGGTAGCGGGGGTGGTGGTAGTCGACCGAAGCTTAATCTGCAGCCACGTACGCTGCCGGTGAATGTGTGAAGTCGTCAAATATATTAGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA ATGGAAAAGCTTCAATCAGATGGAATCAAAGTTGTTGAAGCCTACAACTCTTTCTCACCAGAATTGGAGGAATCAAAAGATCGGAATTCAGGGAGGGATGGCTTTGATTATTATGGAGGGAAGGGAAGATGCCAGAAAGGTTTAAATTTCGGTCGTGTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGGACGACGGCGAGGTCCAAGAGTTCAAACCCATTTGGAATGGTGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGAACATGATTGGAAAAAACTTGACAAGGAGTTAGAGTCGAAAATTATGGAAGTGTCAGGTGAGAAGACTGAAAAATCCAACGCCATTGGAAAAAAGAGCTTTGGCAATGGAATTGGTCAGGCTGCTGAGGACAAAACAGAGAGGAGCTGGAGGAAGCCGAGTTTCAATAACTCTGGACCCGTGGGGCGGGGTGCTGAACCTGATAAAAATCCTAGTGGTTTTATGGATGCTAATTGGGCAGGTGACGTAAACGATAGATGCTCCACAAGAGGTTTTTGTTTTACAGCAGGCTCTGTTGCAATTTCATGGTGCAGTAAAAAGCCAAGCATCGTTGCTTTGTCATGTTGTGACGCAGAATATGTAGCTGCTACAATGGCTACTCAAGGATTTTTGTGGCTGATCAGGAGGCTTATTCAAGAAATGGTGACTACTCATTATCATTTTGTTTGA MEKLQSDGIKVVEAYNSFSPELEESKDRNSGRDGFDYYGGKGRCQKGLNFGRVGGGFRNYGSNGTTARSKSSNPFGMVRPREEVLAEKEHDWKKLDKELESKIMEVSGEKTEKSNAIGKKSFGNGIGQAAEDKTERSWRKPSFNNSGPVGRGAEPDKNPSGFMDANWAGDVNDRCSTRGFCFTAGSVAISWCSKKPSIVALSCCDAEYVAATMATQGFLWLIRRLIQEMVTTHYHFV
BLAST of CmaCh09G011560 vs. Swiss-Prot
Match: IF4B3_ARATH (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana GN=EIF4B3 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.3e-11 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
BLAST of CmaCh09G011560 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A0A0K4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009760 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21 Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TrEMBL
Match: W9QKJ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024960 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TrEMBL
Match: M5VJ47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007168mg PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13 Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A151SME3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002148 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TrEMBL
Match: A0A151QP43_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047370 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of CmaCh09G011560 vs. TAIR10
Match: AT4G38710.2 (AT4G38710.2 glycine-rich protein) HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|449454189|ref|XP_004144838.1| (PREDICTED: uncharacterized protein LOC101206224 [Cucumis sativus]) HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21 Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1
BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|659094279|ref|XP_008447975.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo]) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 1
BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|1000983154|ref|XP_015574276.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis]) HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20 Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1
BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|703076253|ref|XP_010090295.1| (hypothetical protein L484_024960 [Morus notabilis]) HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
BLAST of CmaCh09G011560 vs. NCBI nr
Match: gi|1000984444|ref|XP_015578368.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ricinus communis]) HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13 Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |