CmaCh09G011360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein
Location	Cma_Chr09 : 6433481 .. 6433985 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTAGTGGAAACCCGATGATTCCTATGAGCAAAATCGCTATCGAGATGTTAAGAAGAGTAAGCATCGAAGAGATAGACACGAATGAAATGTGTGTAATTTGCTTGGAAAAAATAGAAAAAGGTGCAATATTATTATTGCAAATGCCTTGTTTGCACGTGTTTCACGAGGAATGCATAAAACCGTGGCTCTTCCACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAACCCAAGTACTCTCTTTCGGATCCAGGTGTCCAATTTGTAGATTTGTCATATCTACCCAATAACTTTTTTTAATTTTTTTAATTTTAGTTTTAA

mRNA sequence

ATGGATATTAGTGGAAACCCGATGATTCCTATGAGCAAAATCGCTATCGAGATGTTAAGAAGAGTAAGCATCGAAGAGATAGACACGAATGAAATGTGTGTAATTTGCTTGGAAAAAATAGAAAAAGGTGCAATATTATTATTGCAAATGCCTTGTTTGCACGTGTTTCACGAGGAATGCATAAAACCGTGGCTCTTCCACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAACCCAATTTTAA

Coding sequence (CDS)

ATGGATATTAGTGGAAACCCGATGATTCCTATGAGCAAAATCGCTATCGAGATGTTAAGAAGAGTAAGCATCGAAGAGATAGACACGAATGAAATGTGTGTAATTTGCTTGGAAAAAATAGAAAAAGGTGCAATATTATTATTGCAAATGCCTTGTTTGCACGTGTTTCACGAGGAATGCATAAAACCGTGGCTCTTCCACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAACCCAATTTTAA

Protein sequence

MDISGNPMIPMSKIAIEMLRRVSIEEIDTNEMCVICLEKIEKGAILLLQMPCLHVFHEECIKPWLFHRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRTQF

Homology

[Close]

BLAST of CmaCh09G011360 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.3e-07
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 4   SGNPMIPMSKIAIEMLRRVSIEEIDTNEM--CVICLEKIEKGAILLLQMPCLHVFHEECI 63
           SGNP  P SK AIE L RV I +  T     C +C E  E G I   +MPC H+FH +CI
Sbjct: 186 SGNP--PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAG-IEGREMPCKHIFHGDCI 245

Query: 64  KPWL 66
            PWL
Sbjct: 246 VPWL 246

[Close]

BLAST of CmaCh09G011360 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 4   SGNPMIPMSKIAIEMLRRVSIEE--IDTNEMCVICLEKIEKGAILLLQMPCLHVFHEECI 63
           SGNP  P SK AIE L RV I +  I +   C +C E  E       +MPC H+FH++CI
Sbjct: 170 SGNP--PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAR-EMPCKHLFHDDCI 229

Query: 64  KPWL 66
            PWL
Sbjct: 230 VPWL 230

[Close]

BLAST of CmaCh09G011360 vs. TrEMBL
Match: A0A0J8CFQ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 70  IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRAL 129
           +FPKSSHR+EGL PRCRLFATWGCSMFQGLGCSPIKAVRELGSE RETVRSISGVGVRAL
Sbjct: 1   MFPKSSHRQEGLTPRCRLFATWGCSMFQGLGCSPIKAVRELGSELRETVRSISGVGVRAL 60

Query: 130 RGPFPSTR 138
           RGPFPSTR
Sbjct: 61  RGPFPSTR 68

[Close]

BLAST of CmaCh09G011360 vs. TrEMBL
Match: A0A0D2RH14_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G175800 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 70  IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRAL 129
           +FP SSHRREGLAP+CRLFATWGCSMFQGLGCSPIKAVRELG E RETVRSISGVGVRAL
Sbjct: 4   LFPNSSHRREGLAPQCRLFATWGCSMFQGLGCSPIKAVRELGLEHRETVRSISGVGVRAL 63

Query: 130 RGPFPSTR 138
           RGP PSTR
Sbjct: 64  RGPCPSTR 71

[Close]

BLAST of CmaCh09G011360 vs. TrEMBL
Match: U5U8B3_9CHLO (Uncharacterized protein OS=Chlorella sp. ArM0029B GN=orf114 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.9e-27
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLIFPKSSHRREGLAPRCRL ATWG S  QGLGCSP+KAVRELGSERRETVRSISGVGV
Sbjct: 16  NRLIFPKSSHRREGLAPRCRLIATWGGSTSQGLGCSPMKAVRELGSERRETVRSISGVGV 75

Query: 127 RALRGPFPSTR 138
           RALRG F STR
Sbjct: 76  RALRGVFHSTR 86

[Close]

BLAST of CmaCh09G011360 vs. TrEMBL
Match: E7ABD3_HELFC (Uncharacterized protein OS=Helicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) GN=Hfelis_16070 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 54/71 (76.06%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLI PKSSHRR GLAPRCRL A+WG S  QG GCSP KAVRELGSERRETVRS+S VGV
Sbjct: 52  NRLISPKSSHRRGGLAPRCRLIASWGWSRSQGYGCSPFKAVRELGSERRETVRSLSAVGV 111

Query: 127 RALRGPFPSTR 138
             LR   PSTR
Sbjct: 112 GKLRRAVPSTR 122

[Close]

BLAST of CmaCh09G011360 vs. TrEMBL
Match: H6SIA7_RHOPH (Uncharacterized protein (Fragment) OS=Pararhodospirillum photometricum DSM 122 GN=RSPPHO_03243 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLI PKS HRR+ LAPRCRL  +WG S  QG GCSPIK VRELG ERRETVRS+S VGV
Sbjct: 20  NRLILPKSPHRRQCLAPRCRLITSWGWSRSQGFGCSPIKVVRELGLERRETVRSLSTVGV 79

Query: 127 RALRGPFPSTR 138
             LRG  PSTR
Sbjct: 80  GNLRGAVPSTR 90

[Close]

BLAST of CmaCh09G011360 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-08
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 4   SGNPMIPMSKIAIEMLRRVSIEEIDTNEM--CVICLEKIEKGAILLLQMPCLHVFHEECI 63
           SGNP  P SK AIE L RV I +  T     C +C E  E G I   +MPC H+FH +CI
Sbjct: 186 SGNP--PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAG-IEGREMPCKHIFHGDCI 245

Query: 64  KPWL 66
            PWL
Sbjct: 246 VPWL 246

[Close]

BLAST of CmaCh09G011360 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 4   SGNPMIPMSKIAIEMLRRVSIEE--IDTNEMCVICLEKIEKGAILLLQMPCLHVFHEECI 63
           SGNP  P SK AIE L RV I +  I +   C +C E  E       +MPC H+FH++CI
Sbjct: 170 SGNP--PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAR-EMPCKHLFHDDCI 229

Query: 64  KPWL 66
            PWL
Sbjct: 230 VPWL 230

[Close]

BLAST of CmaCh09G011360 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 10  PMSKIAIEMLRRVSI-EEIDTNEM--CVICLEKIEKGAILLLQMPCLHVFHEECIKPWL 66
           P SK AI+ L  V + +++  +EM  C +C+++ E G+ +  QMPC HVFH++C+ PWL
Sbjct: 190 PASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVK-QMPCKHVFHQDCLLPWL 247

[Close]

BLAST of CmaCh09G011360 vs. NCBI nr
Match: gi|870859394|gb|KMT10843.1| (hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 70  IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRAL 129
           +FPKSSHR+EGL PRCRLFATWGCSMFQGLGCSPIKAVRELGSE RETVRSISGVGVRAL
Sbjct: 1   MFPKSSHRQEGLTPRCRLFATWGCSMFQGLGCSPIKAVRELGSELRETVRSISGVGVRAL 60

Query: 130 RGPFPSTR 138
           RGPFPSTR
Sbjct: 61  RGPFPSTR 68

[Close]

BLAST of CmaCh09G011360 vs. NCBI nr
Match: gi|763763840|gb|KJB31094.1| (hypothetical protein B456_005G175800 [Gossypium raimondii])

HSP 1 Score: 132.9 bits (333), Expect = 4.4e-28
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 70  IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRAL 129
           +FP SSHRREGLAP+CRLFATWGCSMFQGLGCSPIKAVRELG E RETVRSISGVGVRAL
Sbjct: 4   LFPNSSHRREGLAPQCRLFATWGCSMFQGLGCSPIKAVRELGLEHRETVRSISGVGVRAL 63

Query: 130 RGPFPSTR 138
           RGP PSTR
Sbjct: 64  RGPCPSTR 71

[Close]

BLAST of CmaCh09G011360 vs. NCBI nr
Match: gi|555946148|gb|AGZ19352.1| (hypothetical protein CH29B_p069 (chloroplast) (chloroplast) [Chlorella sp. ArM0029B])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLIFPKSSHRREGLAPRCRL ATWG S  QGLGCSP+KAVRELGSERRETVRSISGVGV
Sbjct: 16  NRLIFPKSSHRREGLAPRCRLIATWGGSTSQGLGCSPMKAVRELGSERRETVRSISGVGV 75

Query: 127 RALRGPFPSTR 138
           RALRG F STR
Sbjct: 76  RALRGVFHSTR 86

[Close]

BLAST of CmaCh09G011360 vs. NCBI nr
Match: gi|507193519|gb|EOR35171.1| (hypothetical protein S103564_1172, partial [Staphylococcus aureus subsp. aureus 103564])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLI PKSSHRR GLAPRCRL A+WGCS  QGLGCSPIKAVRELGSERRETVRS+S VGV
Sbjct: 17  NRLISPKSSHRRGGLAPRCRLIASWGCSRSQGLGCSPIKAVRELGSERRETVRSLSVVGV 76

Query: 127 RALRGPFPSTR 138
             LRG   STR
Sbjct: 77  GNLRGAVLSTR 87

[Close]

BLAST of CmaCh09G011360 vs. NCBI nr
Match: gi|315133063|emb|CBY83691.1| (putative uncharacterized protein [Helicobacter felis ATCC 49179])

HSP 1 Score: 109.0 bits (271), Expect = 6.8e-21
Identity = 54/71 (76.06%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 67  HRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGV 126
           +RLI PKSSHRR GLAPRCRL A+WG S  QG GCSP KAVRELGSERRETVRS+S VGV
Sbjct: 52  NRLISPKSSHRRGGLAPRCRLIASWGWSRSQGYGCSPFKAVRELGSERRETVRSLSAVGV 111

Query: 127 RALRGPFPSTR 138
             LR   PSTR
Sbjct: 112 GKLRRAVPSTR 122

The following BLAST results are available for this feature:

BLAST of CmaCh09G011360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDUF1_ARATH	7.3e-07	50.00	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]
RDUF2_ARATH	3.6e-06	46.88	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]

BLAST of CmaCh09G011360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0J8CFQ3_BETVU	1.2e-29	94.12	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 S...	[more]
A0A0D2RH14_GOSRA	3.1e-28	91.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G175800 PE=4 SV=1	[more]
U5U8B3_9CHLO	9.9e-27	88.73	Uncharacterized protein OS=Chlorella sp. ArM0029B GN=orf114 PE=4 SV=1	[more]
E7ABD3_HELFC	4.7e-21	76.06	Uncharacterized protein OS=Helicobacter felis (strain ATCC 49179 / NCTC 12436 / ...	[more]
H6SIA7_RHOPH	1.2e-19	71.83	Uncharacterized protein (Fragment) OS=Pararhodospirillum photometricum DSM 122 G...	[more]

BLAST of CmaCh09G011360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46620.1	4.1e-08	50.00	zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G59550.1	2.0e-07	46.88	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G19950.1	1.3e-06	42.37	RING/U-box superfamily protein	[more]

BLAST of CmaCh09G011360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|870859394\|gb\|KMT10843.1\|	1.8e-29	94.12	hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris]	[more]
gi\|763763840\|gb\|KJB31094.1\|	4.4e-28	91.18	hypothetical protein B456_005G175800 [Gossypium raimondii]	[more]
gi\|555946148\|gb\|AGZ19352.1\|	1.4e-26	88.73	hypothetical protein CH29B_p069 (chloroplast) (chloroplast) [Chlorella sp. ArM00...	[more]
gi\|507193519\|gb\|EOR35171.1\|	1.6e-22	80.28	hypothetical protein S103564_1172, partial [Staphylococcus aureus subsp. aureus ...	[more]
gi\|315133063\|emb\|CBY83691.1\|	6.8e-21	76.06	putative uncharacterized protein [Helicobacter felis ATCC 49179]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011360.1	CmaCh09G011360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 32..65 score: 8.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 33..85 score: 0.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 33..86 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 28..67 score: 9.3
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 1..65 score: 1.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 25..70 score: 1.26

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011360	Cucumber (Gy14) v1	cgycmaB0133
CmaCh09G011360	Cucumber (Gy14) v1	cgycmaB0670
CmaCh09G011360	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011360	Wild cucumber (PI 183967)	cmacpiB039
CmaCh09G011360	Melon (DHL92) v3.5.1	cmameB019
CmaCh09G011360	Watermelon (Charleston Gray)	cmawcgB008
CmaCh09G011360	Watermelon (Charleston Gray)	cmawcgB011
CmaCh09G011360	Watermelon (97103) v1	cmawmB010
CmaCh09G011360	Watermelon (97103) v1	cmawmB013
CmaCh09G011360	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011360	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G011360	Cucurbita pepo (Zucchini)	cmacpeB063
CmaCh09G011360	Bottle gourd (USVL1VR-Ls)	cmalsiB017
CmaCh09G011360	Bottle gourd (USVL1VR-Ls)	cmalsiB019
CmaCh09G011360	Cucumber (Gy14) v2	cgybcmaB883
CmaCh09G011360	Melon (DHL92) v3.6.1	cmamedB017
CmaCh09G011360	Melon (DHL92) v3.6.1	cmamedB020
CmaCh09G011360	Cucumber (Chinese Long) v3	cmacucB0048
CmaCh09G011360	Watermelon (97103) v2	cmawmbB049
CmaCh09G011360	Watermelon (97103) v2	cmawmbB052
CmaCh09G011360	Wax gourd	cmawgoB0031
CmaCh09G011360	Wax gourd	cmawgoB0039