CmaCh09G011070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr09 : 6056697 .. 6057146 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

mRNA sequence

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

Coding sequence (CDS)

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

Protein sequence

MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY

Homology

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BLAST of CmaCh09G011070 vs. TrEMBL
Match: A0A103XZ39_CYNCS (Extensin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022219 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 96/192 (50.00%), Postives = 104/192 (54.17%), Query Frame = 1


Query: 10  LVIAVCVVALSSSSTTAEGYDDYYSPPPPVK---------------------YSSPPPPA 69
           + +AV +V+LS  S T   Y     PPPP K                     Y SPPPP 
Sbjct: 13  ITLAVVIVSLSLPSLTTATYPYSSPPPPPPKKSPPPPAHHYIYKSPPPPPPVYKSPPPPK 72

Query: 70  YY------------SPPPPKKDDEYKSPPPPEVK-----KSPPPPPPRKKPPPPPAPKKS 129
           YY            SPPPPKK   YKSPPPP  K     KSPPPPPP+K         KS
Sbjct: 73  YYYKSPPPPTPVHKSPPPPKKPYVYKSPPPPPPKEHYVYKSPPPPPPKKH-----YVYKS 132

Query: 130 PPPPPPRK----KSPPPPAPK-----KSPPPPPPRKKSPPPPPPK-----KSPPPPSPVY 150
           PPPPPP+K    KSPPPP PK     KSPPPPPP  KSPPPPPPK     KSPPPP+PV+
Sbjct: 133 PPPPPPKKHYVYKSPPPPPPKKHYVYKSPPPPPPTHKSPPPPPPKKPYVYKSPPPPTPVH 192

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BLAST of CmaCh09G011070 vs. TrEMBL
Match: A0A068VKQ7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010544001 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 84/117 (71.79%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 35  PPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPE-VKKSPPPPPP-RKKPPPPPAPKKSP 94
           PPPP  +S PPPP Y +PPPP     YKSPPPP  V KSPPPPPP  K PPPPP   KSP
Sbjct: 123 PPPPPVHSPPPPPIYKAPPPPPP--VYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSP 182

Query: 95  PPPPPRKKSPPPPAP-KKSPPPPPPRKKSPPPPPP-KKSPPPPSPVYKSPPPPPSPY 148
           PPPPP  KSPPPP P  KSPPPPPP  KSPPPPPP  KSPPPP PVYKSPPPPP  Y
Sbjct: 183 PPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVY 237

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BLAST of CmaCh09G011070 vs. TrEMBL
Match: A0A067LES1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25201 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 83/125 (66.40%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 35  PPPPVKYSSPPPP--AYYSPPPPKKDDEYKSPPPPEVK-KSPPPPPPRKKPPPPPAPK-- 94
           PPPP KY SPPPP   Y  PPPPKK  +YKSPPPP  K KSPPPPPP   PPPPP     
Sbjct: 196 PPPPYKYKSPPPPPPVYSPPPPPKKPYKYKSPPPPPYKYKSPPPPPPVYSPPPPPKKPYK 255

Query: 95  -KSPPPPPPRKKSPPPPAPKKSPPPPPPRK---KSPPPPPPK-KSPPPPSPVYKSPPPPP 150
            KSPPPPP + KSPPPP P  SPPPPP +    KSPPPPP K KSPPPP PVY  PPPP 
Sbjct: 256 YKSPPPPPYKYKSPPPPPPVYSPPPPPKKPYKYKSPPPPPYKYKSPPPPPPVYSPPPPPK 315

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BLAST of CmaCh09G011070 vs. NCBI nr
Match: gi|976913253|gb|KVH99544.1| (Extensin repeat-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 65.9 bits (159), Expect = 7.0e-08
Identity = 96/192 (50.00%), Postives = 104/192 (54.17%), Query Frame = 1


Query: 10  LVIAVCVVALSSSSTTAEGYDDYYSPPPPVK---------------------YSSPPPPA 69
           + +AV +V+LS  S T   Y     PPPP K                     Y SPPPP 
Sbjct: 13  ITLAVVIVSLSLPSLTTATYPYSSPPPPPPKKSPPPPAHHYIYKSPPPPPPVYKSPPPPK 72

Query: 70  YY------------SPPPPKKDDEYKSPPPPEVK-----KSPPPPPPRKKPPPPPAPKKS 129
           YY            SPPPPKK   YKSPPPP  K     KSPPPPPP+K         KS
Sbjct: 73  YYYKSPPPPTPVHKSPPPPKKPYVYKSPPPPPPKEHYVYKSPPPPPPKKH-----YVYKS 132

Query: 130 PPPPPPRK----KSPPPPAPK-----KSPPPPPPRKKSPPPPPPK-----KSPPPPSPVY 150
           PPPPPP+K    KSPPPP PK     KSPPPPPP  KSPPPPPPK     KSPPPP+PV+
Sbjct: 133 PPPPPPKKHYVYKSPPPPPPKKHYVYKSPPPPPPTHKSPPPPPPKKPYVYKSPPPPTPVH 192

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BLAST of CmaCh09G011070 vs. NCBI nr
Match: gi|661875154|emb|CDP20248.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 84/117 (71.79%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 35  PPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPE-VKKSPPPPPP-RKKPPPPPAPKKSP 94
           PPPP  +S PPPP Y +PPPP     YKSPPPP  V KSPPPPPP  K PPPPP   KSP
Sbjct: 123 PPPPPVHSPPPPPIYKAPPPPPP--VYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSP 182

Query: 95  PPPPPRKKSPPPPAP-KKSPPPPPPRKKSPPPPPP-KKSPPPPSPVYKSPPPPPSPY 148
           PPPPP  KSPPPP P  KSPPPPPP  KSPPPPPP  KSPPPP PVYKSPPPPP  Y
Sbjct: 183 PPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVYKSPPPPPPVY 237

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BLAST of CmaCh09G011070 vs. NCBI nr
Match: gi|743911863|ref|XP_010999796.1| (PREDICTED: extensin-3 isoform X3 [Populus euphratica])

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 90/140 (64.29%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 32  YYSPPPP---VKYSSPPPP--AYYSPPP-PKKDDEYKSPPPPEVKKSPPPPPPRKKPPPP 91
           Y SPPPP    KY SPPPP   Y SPPP PKK  +YKSPPPP + KSPPPPPP  K PPP
Sbjct: 93  YKSPPPPPPVYKYKSPPPPPPVYKSPPPPPKKPYKYKSPPPPPIYKSPPPPPPVHKSPPP 152

Query: 92  PAPK----KSPPPPPPRKKSPPPPAPK-----KSPPPPPP---RKKSPPPPPP-KKSPPP 149
           P  K    KSPPPPPP  KSPPPP+PK     KSPPPPP    + KSPPPPPP  KSPPP
Sbjct: 153 PPEKPYKYKSPPPPPPVHKSPPPPSPKKPYKYKSPPPPPTPVYKYKSPPPPPPVHKSPPP 212

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: gi|743911859|ref|XP_010999794.1| (PREDICTED: extensin-3 isoform X1 [Populus euphratica])

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 90/140 (64.29%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 32  YYSPPPP---VKYSSPPPP--AYYSPPP-PKKDDEYKSPPPPEVKKSPPPPPPRKKPPPP 91
           Y SPPPP    KY SPPPP   Y SPPP PKK  +YKSPPPP + KSPPPPPP  K PPP
Sbjct: 113 YKSPPPPPPVYKYKSPPPPPPVYKSPPPPPKKPYKYKSPPPPPIYKSPPPPPPVHKSPPP 172

Query: 92  PAPK----KSPPPPPPRKKSPPPPAPK-----KSPPPPPP---RKKSPPPPPP-KKSPPP 149
           P  K    KSPPPPPP  KSPPPP+PK     KSPPPPP    + KSPPPPPP  KSPPP
Sbjct: 173 PPEKPYKYKSPPPPPPVHKSPPPPSPKKPYKYKSPPPPPTPVYKYKSPPPPPPVHKSPPP 232

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: gi|643736744|gb|KDP43015.1| (hypothetical protein JCGZ_25201 [Jatropha curcas])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 83/125 (66.40%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 35  PPPPVKYSSPPPP--AYYSPPPPKKDDEYKSPPPPEVK-KSPPPPPPRKKPPPPPAPK-- 94
           PPPP KY SPPPP   Y  PPPPKK  +YKSPPPP  K KSPPPPPP   PPPPP     
Sbjct: 196 PPPPYKYKSPPPPPPVYSPPPPPKKPYKYKSPPPPPYKYKSPPPPPPVYSPPPPPKKPYK 255

Query: 95  -KSPPPPPPRKKSPPPPAPKKSPPPPPPRK---KSPPPPPPK-KSPPPPSPVYKSPPPPP 150
            KSPPPPP + KSPPPP P  SPPPPP +    KSPPPPP K KSPPPP PVY  PPPP 
Sbjct: 256 YKSPPPPPYKYKSPPPPPPVYSPPPPPKKPYKYKSPPPPPYKYKSPPPPPPVYSPPPPPK 315

The following BLAST results are available for this feature:

BLAST of CmaCh09G011070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103XZ39_CYNCS	4.9e-08	50.00	Extensin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]
A0A068VKQ7_COFCA	5.4e-07	71.79	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010544001 PE=4 SV=1	[more]
A0A067LES1_JATCU	2.1e-06	66.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25201 PE=4 SV=1	[more]

BLAST of CmaCh09G011070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976913253\|gb\|KVH99544.1\|	7.0e-08	50.00	Extensin repeat-containing protein [Cynara cardunculus var. scolymus]	[more]
gi\|661875154\|emb\|CDP20248.1\|	7.8e-07	71.79	unnamed protein product [Coffea canephora]	[more]
gi\|743911863\|ref\|XP_010999796.1\|	2.3e-06	64.29	PREDICTED: extensin-3 isoform X3 [Populus euphratica]	[more]
gi\|743911859\|ref\|XP_010999794.1\|	2.3e-06	64.29	PREDICTED: extensin-3 isoform X1 [Populus euphratica]	[more]
gi\|643736744\|gb\|KDP43015.1\|	3.0e-06	66.40	hypothetical protein JCGZ_25201 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011070.1	CmaCh09G011070.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G011070	Carg23297	Silver-seed gourd	carcmaB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011070	Watermelon (97103) v2	cmawmbB049
CmaCh09G011070	Wax gourd	cmawgoB0031
CmaCh09G011070	Cucurbita maxima (Rimu)	cmacmaB052
CmaCh09G011070	Cucumber (Gy14) v1	cgycmaB0133
CmaCh09G011070	Cucurbita moschata (Rifu)	cmacmoB048
CmaCh09G011070	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011070	Wild cucumber (PI 183967)	cmacpiB045
CmaCh09G011070	Wild cucumber (PI 183967)	cmacpiB043
CmaCh09G011070	Cucumber (Chinese Long) v2	cmacuB043
CmaCh09G011070	Melon (DHL92) v3.5.1	cmameB019
CmaCh09G011070	Watermelon (Charleston Gray)	cmawcgB008
CmaCh09G011070	Watermelon (97103) v1	cmawmB010
CmaCh09G011070	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011070	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G011070	Bottle gourd (USVL1VR-Ls)	cmalsiB019
CmaCh09G011070	Cucumber (Gy14) v2	cgybcmaB887
CmaCh09G011070	Cucumber (Chinese Long) v3	cmacucB0053