CmaCh09G011020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cma_Chr09 : 6022293 .. 6031702 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGACGAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGATTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTATCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTGTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAATGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCTTTTTGGGCTGAGGCCCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTATGGTCGGGTACTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCCTACTTATTATCATGTGACAGACTCAAAGCTGGATCCTATAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGTGTAAAGGGTTATAGGTTATGGTGCCAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAAAAAATTGAAAATAATGACGAGGCATTGAAACAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGGTAGATAATAACTCTGATGTATTAGAATAGGAGAAGCAAAGCCTCGTAAATGAAAGAGTGGAGGAACATGAGTCTATCGACAAGAATAGACCACGAAGGGTAATTCGAAAACCTGCAAGGTTTGATGATACGATAGCATATGCTTTCTCATGATTGATGGAGTTCCCAACGTAAGTATTGAGGCTTGAGGAGGTAGCAACCAATTAGTTATCAACTTGGAGATCTTATGACAAGGAGAAGATTATTGTAAATTGTAAAAGTTTTGATTTGATTATTTGGATTAGATTATTTGAATTAGATTTAGTCATACCAGGGTTTAGTGATATATCGAGATTTGATATCGGAATTTGATATCGGGATTTGGGAGAGTTTTGAGGGTCACATCGTATTTGTTGAGTGACATATTGGTGAGTCTTTGTAGTGTGATAGTGAGGTATTCACTTGTAACACTTTGTTTATTAGTGATTGGTTGCTACCCGTGGATGTAGTTGAACTTCTTCTCTCCGAACCACGTAAATATTTTAGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAAGTGGTATCAGAGCTTGATTGTGGTATTTGGGGTATTGTGAAAGTTTTGGCCTCATCGACCACTAGACGTGCTCAAAATCGTGCTTATTTTCTTGAAAATGGCAGAATCATCTGGAATTAAATCACGGCGTGGATCAAGATTTTTGAGTTCTCATCTCGAAGTAGAGAAATTTGATGGAACCAATAATTTTGGTGTTTGGCAAGGCGAAGTTAGCGATTAGCTGGGCATGCAAGATCTTGATGCTTCTCTCCAAGAGGTGATGCCTGAAGACATGACAAAAGCAAAATGGACGAAATTAAATTGGCAAGCTTGTGGAATTATTCGATCCTGTCTTGGCAAGGATCAGAAATATCCATTTATGAAGGTGACCATGACGAAAGAACTATGAGACAAGCTTGAGGGAAATATATGCAGAAGAGTGTGGAAAACAAACTCTATTTGAAGAAGAAACCCTTCCGTTTTGACTATAAGAATAGGTATTTCAATAGCTGAGCATTTGGATGATTTTAACAAAATCATCACTAATTTGCTCAATCTTGATGTTAAGATTGATGATAAAGACAAGACGACGTTATTATTAAATTCTTTGCTGGAGTCCTACGAGTTTTTAGTAACCACTCTACTGCATGGAGCCTATGATATTGATTTTGAAGATGTTTCAAATGCCTTGATGAATAATGAGGTGCGAAAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTCGTGAAATGACTTCTACTTGGAAAAGGAGCGAATGTGGAGAGTCCCTATCAAAGTCAAGAGGTAGATATGGTAATTGGAGAAAACTTGATAAAAATGAGTGTGCATATTGTCGACAGAAAGGCCATTGGAAGAAAGATTACCCGATCTTAAAAGAGAAGGGGTCGAAGTCCAATGTGGTTAGAGATGACGACACTGATACAGATAATGCCTTGACGATCTCTCAGTCAGCCAAACTAGTGAATGGATTCTTGATTTTGGGTGCTCCTATCATATGTATTCCAACAGAGAGATGTTTTTGGACTTCAAAGAGTTCAATGGTGGAGTTGTCTATATGGGCAATGATAGTACTTGCAATATGACGGGAATCGGCTCAATACAAATCAAGATGTTTGACAAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGACTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTTTCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAATGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCTTTTTGGGCTGAGGCTCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTATGGTCAGGTACTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATTCTATAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGCGTAAAGGGTTATAGGTTATGGTGTCTAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAGGTTGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAGAAGCAAAGCCTCGTAAATGAAAGAGTGGAGGAACATGAGTCTATCGACAAGAATAGACCACGAAGGGTAATTCGAAAACCTGCAAGGTTTGATGATACGATAGCATATGCTTTCTCATGATTGATGGAGTTCCCAACATAAGTATTGAGGCTTGAGGAGGTAGCAACCAATCAGTTATCAACTTGGAGATCTTATGACAAGGAGAAGATTATTGTAAATTGTAAAAGTTTTGATTTGATTATTTGGATTAGATTATTTGAATTAGATTTAGTCATACCAGGGTTTAGTGATATATCGAGATTTGATATCGGAATTTGATATCGGGATTTGGGAGAGTTTTGAGGGTCACATCGTATTTGTTGAGTGACATATTGGTGAGTCTTTGTAGTGTGATAGTGAGGTATTCACTTGTAACACTTTGTTTATTAGTGATTGGTTGCTACCCGTGGATGTAGGGGAAGTTCTATAAACTTTGAGGGATAAGTCAAGTTAATATCGAAGATAGGATAGAATGTTGGCTAAGGCCAACGAAGTAAGTGACCTTACTATCGGTATGGTTGGAAGATTTGTGTGATGCAAGATGACACATGTTCAATGGCCCCGCACTTGTCATATGTTTGATATGTGTACTTTTTATGATGTGATATGTTATATGCTATGATATCTTTAATTGTATGATATGTTGAAGGATATGATGTGTTTTTGAAAGAAAGTTGAAAGGTACAATATGTTGAATAGGAAATGTTGAACGACATAATACATTGCATGACATGATATTGACATGTATTAATGAATCATTCGGATATTCATTGATTTTTCAATATTTTGCTTTGTTTTATTTTAATTTACTTCAAATATTTTGCTTCGATGTATAATTTCATGACATCATTTTGTGAAATCAAACCTTAGCTTCAAAAAACAAATCTACCAAAACCCAACCCACACACCCTCAGCCACCCGAACCAACAACGTTTCGACCTAAAGAATGAGATAAATGAGCTTACTATTAGAGTGCCTTCAGACTAGGTTGGATAAATTGTGATATATGACTAACACAACTTTTGGCTTATTTATGAAATATGGATATGCTTATGATATGTTGTGTTACATGTACTTTCAAGTGTATTGATTTATATATGTTATGATACTATGATCACATTATGTCCCATAAGTTGAATGATATTTCTTGCATGTGTGCATGTCTCATAGGGAATTCATGTCATGAAATAAGTACGATGCATGTCATGACCATGTACAATGATTTAAAATATAAGACCTCATGCATGTTGTATGTCCTGAGAACAAGTTACTGTCCTAATATGTTACGTAATATGTTACGTACGAACATGTACGTCATGATATGATATATGCTCCTTTCTTTTTGTTGGTTTCTAGTAGTGTGAGCATGCACTAACCCATAGTCAAGCTTAGGGGGTACATATACAAGTCAGCCTAATAGGTTCATGCATGCTTACGTGCTCAATGTCTAGAGAAGTACTATACATATAACTCTATCCAAAAAATAAACTATACCCAAGGAATAGTAACAAAAAGTAGGTCCCTTGCATGTGTTGCATTTTTCAAATCTAATGTCACTTACTAATTATTTTTAAATACTTAACTTACGTTTGACATTTTTTGAAGTAAAAGTAAGAACCTCATGTACAGATGATACATCAATTAATGAAGCCATAGACACCAAAGAGGACAGCTACGTAAGAAGAGAATCAATGAAAATCGTGCAAAGAGGAGGGCATGCCTAATTTGTCTTGAATTCGATCAACTCGAGATTATAAAAGAATACGAGTCGTTTTTTTGGTAGAATGTGGAGGAAGATTGACAAGATACCTGTTACAAGAAAACAGACCCAAGAAAGGAAGCCTAGGAAGGTTTACTTATCTCTTAGGAGAGCATAGACGCAAGAATAGCCAACATAGAAACAAAGAGTATCTAAAGCAAGAAGATGGAACTAAGGGAACTTTGAGGAAGCTTATGCTAATTCTTCTTTCCCTCCACTGTTCATCTATCTTTGATAGTGTTGTGTCAATTTTTATATACCATGTCATAAGTGTAATGACTTTGCTCTGGAATTTCTCCTACCTGTTACATCCAAATTACTTAAGCAAGATTAAGAAGACCATTGTAAAGAGTTATGAACTTAAGCCAAAGCAGACATTATAAAATTATGGCCTAGAGTTTCTATTAGATCAAGAACTTGAAAGAACTTTTAATAGAAGATTGATTGAACGAAGAGCTAGAATGATAGAACAACTCGTACCAAATCTTGATCCTAAAGTAAAGCTAAACCTTGAGTTAAAAGACACCAAATGATGCAACCAATCAGACTAGAAATTCTGCAAGTATCTATTGAATCATGTGTGTGTTGGAGAGAATGACAACGAATAGCCAATATAAACTATTGGAAGATCATAGAGAATAAGTCGAGACCTAACAAAAGTACCCCTGAAGTGTTGCGAAAGACTGAAATGGGAAGGGAAACAAAACGAAATGTACCGGATTTTTAGCACGTACAACCATCAAACCAAGAACCAAAACTGAGCTCGACAAAACAACATTCAAATTTTTCCCAAAAAATCCACCTCAGTTGTCTATGTTGCAAACCAAGGGAATCAGGGAAATAATCCATTCTCAAACACTGTCTAACCCTGAGGGGAGAAATCATTCAAAATTTTCCCATGGAGATTTAGGACATAATGCTAACAACTCTCATATGCAATAGAAACTGAACTATCTCCCTAGATTTGAACAAAATCAACAAAATTTTGGAATTCAATAAGCCACAACCGAATCAGAAGTTAAACAGTGCTCAATGAGGAGGAGGTTTGTTAAGTGAAGCCAATAGAATCATAAAGTTGTGTCCCCTTCACCAAACAAGCATATACCCATCTCCCTCCTTTTTTCACGAGATTGAAGAAGAAGAGGAAACCCACTTAGAAAAGTTTATGGACATTCTAAAGAAAATACATATAAACACACCATTATAGAAGCTCTCAAGCAAATGCATAACCATGCAAAATTCCTCAAGGACATCGTCACAAAGTGGAAAAAGTTTGAAGAGTTTAAGGTAGTTCCATTGAATGAGGAATGTACAGTCCTGAAAAATAAGATACCTCAAAAAGAGAGACTCTAGATTCTTCACTATTTCAATGTCAATTAGAGGACAGTTGCTAGGAAGAGCTCTTTGATATCTGTGAACAAGCATCAACCTAATGCCTCTTTCTGTTGGGTATTGGTAAAGCTCGACTAATCTCATTCACACTTCAACTAGCTAATAGATCTATCACTTATCCTGAAGGAGACATTGAAGATATCCTATTGCAAGTAGATAAATTTATATTCCTATCAGATCTTTTAAATTTTGGACTATGAGGCTGATAAATATGTACATATCATTTGGGAAGACCTTTCATTAAAATAGGAAGAACTGTGGTGGGTGTGTATAAATGCACTATAACCCTAAGGATGATAAGCTTCTTAGAATATGCAGAATTTTTTTCTTAAAAGTTACAAAACCCATCTGCAACCTACTAGAAGTAAACAAGAATTTTGAGTTTGATGAGAAGTGTTTAATAGAATTTTAAGCACTAAAACGGCCTTGATCACTGCACTTATATTGTTTTCACTCAATCAAGAGTTTCCATTTAAACTAATGTATGATGCTAGTGATTATGTTGTTGGTGCAATGCTTGGACAAAAGAATGAAAAAATACTGCACCTAGTTTACTATGCTAGTAAAATATTATATGAATCTCAAATCAATTATACCATTACTAAAAAGGAGTTGTTGGCTGTAGTGTTCGTCCTATTTGGTTGGCGCAAAGGTTAAAGTATGCACGGACCACACAGCAATCAAATACCTAATGACTAAGATAGATGCAAGGCGAAAGTTGATTCCGTGGATCCTGTTGTTACAAGAACTTGAAATAGAGATTAAAGATACAAAAGGGTCTAACACTCAAGTGGCTTATCATCTGTCTAGTCTTGAGCATCCTGAGTAGAAGACATTAAGAATTCCTTCCTTGATGTTCAACAGTTAATTGTGGATATCCCTAAAGACTTGTCTAGACAGCAAAAGAAAAATTATTCCATAGAGCAGAAAGTTATTTATAGGATGATCCCTTCCTATTTAAGTAATGTGTTTATGATATGCTTACTCATTGTCTCTCAAACGATAAAATATAATCCATTTTAGAGCAATGTCGTGCAACTTCATATGGAGGTCATTTTGGAGGTCAAAAAATAGCTACAACTTCAATAATCCAATCAAATTCAACTTAATTAGACATAATAAAGTTTAAATTAATCTTCAAATGGATAAAATAATCTTATCTTAAAACCTGAGACATTATACTACGAACTATGGTAAAACAATTTATGAGAATTTTATCAAACCATAGGGATAAATTCAAATTTTTAAATCATATGGACTAAATTTTAATTTTCTCTTGGGGACTATACTCATAGCAAGGGATCATACTCATAGTTTAGCCCTACCAAATTTAATAGATATAACCTCCCAAATTTAGAAATATAAATAGTTCTTTTTCCCTAAAAAATTAATCATGCAGATTCTATAAGCAACCATTAACAAGCCATGGTATAGTACACGTCTCAACAAAATATACCCAAGCAAATGTAACCAAACGATGGAAAAATGGTTTTTCGACTGAAAATGAAACCATTCCTAATGTTTAAGTTATTGCTCTTTGAATTAAGGAACACCCAAAAACATTCCATACTAACAAAACGAAACCACAGCTACAACCAAAAGAACTATTCAAATCTCCATAGTCATTTCCTCCAAGAGTTTTCCAGAAATTTTAGTAAATTAGTCCCTATTTGGAATTGTCCCAATAAAATTAGGCTCTACAAATGGCTATTACTAAGTCCAAACGAATGAAGCTTAACTAGAAGGGTATAATAACATAATAACAATAGGAATGGTTCAAGCACAAAATCTACCAAACTAAAGCTTTTATGTTCAAACTTTTACAATATAACAAGTAGGGAATGACTGCCAGGTTTAACCGAGAAAAGAAAAAACGTGACAAAAAAAAGAAAATAAAACGTTATGCCAGACTCTGTCGCTCAATCTAGGAACTAACCTGCATTACTTTGTGTGCTATGTTTTCTTTAGATATTCATAATTCAGATACACCATCATAAAATGTTGAGAAAAGAGCACAAGGAGGACAAAGAAATGAATAATAAAACACAGAAGTTAACTCATTAG

mRNA sequence

ATGTTTGACGAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGATTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTATCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTGTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAATGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCTTTTTGGGCTGAGGCCCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTTATGGTGCCAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAAAAAATTGAAAATAATGACGAGGCATTGAAACAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGATTGATGATAAAGACAAGACGACGTTATTATTAAATTCTTTGCTGGAGTCCTACGAGTTTTTAGTAACCACTCTACTGCATGGAGCCTATGATATTGATTTTGAAGATGTTTCAAATGCCTTGATGAATAATGAGGTGCGAAAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTCGTGAAATGACTTCTACTTGGAAAAGGAGCGAATGTGGAGAGTCCCTATCAAAGTCAAGAGTCAGCCAAACTAGTGAATGGATTCTTGATTTTGGGTGCTCCTATCATATGTATTCCAACAGAGAGATGTTTTTGGACTTCAAAGAGTTCAATGGTGGAGTTGTCTATATGGGCAATGATAGTACTTGCAATATGACGGGAATCGGCTCAATACAAATCAAGATGTTTGACAAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGACTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTTTCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTTCCTGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTATGGTCAGGTACTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATTCTATAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGCGTAAAGGGTTATAGGTTATGGTGTCTAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAGGTTGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAGAAGCAAAGCCTCGTAAATGAAAGAGTGGAGGAACATGAGTCTATCGACAAGAATAGACCACGAAGGATATTCATAATTCAGATACACCATCATAAAATGTTGAGAAAAGAGCACAAGGAGGACAAAGAAATGAATAATAAAACACAGAAGTTAACTCATTAG

Coding sequence (CDS)

ATGTTTGACGAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGATTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTATCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTGTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAATGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCTTTTTGGGCTGAGGCCCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTTATGGTGCCAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAAAAAATTGAAAATAATGACGAGGCATTGAAACAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGATTGATGATAAAGACAAGACGACGTTATTATTAAATTCTTTGCTGGAGTCCTACGAGTTTTTAGTAACCACTCTACTGCATGGAGCCTATGATATTGATTTTGAAGATGTTTCAAATGCCTTGATGAATAATGAGGTGCGAAAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTCGTGAAATGACTTCTACTTGGAAAAGGAGCGAATGTGGAGAGTCCCTATCAAAGTCAAGAGTCAGCCAAACTAGTGAATGGATTCTTGATTTTGGGTGCTCCTATCATATGTATTCCAACAGAGAGATGTTTTTGGACTTCAAAGAGTTCAATGGTGGAGTTGTCTATATGGGCAATGATAGTACTTGCAATATGACGGGAATCGGCTCAATACAAATCAAGATGTTTGACAAGGTTATACGAAAACTCAATGATCTGAGGTATGCCCCTGACTTGAAGAAAAAATTGATTTTCCTTGGCGTTTTGGATGCGAGTGGTTTTCGCATCATTTTGGAAGGAGGGAATTTGAAGGTAGCTCGTGGAGCTTTGGTGGCAATTAAAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGAGCATGCTACTATGGCAAGTTCGAAAGAACAAAACATATCAAAATTATGGCACATGAGACTTGGGCATGCTGGTGATAAGGCACTTCAGACATTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAATAGGTAAAATTGATTTCGGTGAACATTATATATTTGGTAAACAAAAAAATGTGAAGTTTTGTACAGCTATACATCAAACAAAAGGCATTTTGGATTATGTTCACACTGATGTATGGGGCCCCACGAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTTGTCACCTTTATCGATGACTACTCGAGGAGAGTTTGGATGTATCCTATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCAAGAGTGGAAGAAAATGGTAGAGAATCAGACGAACAGGAAAATCAAAAGGCTGAGATCAGACAACGGTGGAGAATATCCTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCATTCGACACTTCACTTCCTGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGAAAATGGTGGAAAAATTCCGCTTGAGGTATGGTCAGGTACTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATTCTATAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGCGTAAAGGGTTATAGGTTATGGTGTCTAGAAACAAGTGAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAGGTTGTGTTCTCTCCTGATATGGTTGCTCCTACTGAAGAACTTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAGAAGCAAAGCCTCGTAAATGAAAGAGTGGAGGAACATGAGTCTATCGACAAGAATAGACCACGAAGGATATTCATAATTCAGATACACCATCATAAAATGTTGAGAAAAGAGCACAAGGAGGACAAAGAAATGAATAATAAAACACAGAAGTTAACTCATTAG

Protein sequence

MFDEVIRKLNDLRYAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTIIEHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTVPGKPQQNGVAERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLPVSENGGKIPLEVMVPETSEIVNSRDVTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPTEELIDQIDDKDKTTLLLNSLLESYEFLVTTLLHGAYDIDFEDVSNALMNNEVRKKEKEAYQDSSSNVLTAREMTSTWKRSECGESLSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIGSIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTIIEHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTSCYAVHLVNRLPVSENGGKIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLETSEIVNSRDVTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPTEELIDQVDNNSDVLEQEKQSLVNERVEEHESIDKNRPRRIFIIQIHHHKMLRKEHKEDKEMNNKTQKLTH

Homology

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BLAST of CmaCh09G011020 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.6e-62
Identity = 129/315 (40.95%), Postives = 189/315 (60.00%), Query Frame = 1


Query: 9   LNDLRYAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTI 68
           L D+R+ PDL+  LI    LD  GY         ++ +G+LV  KG  RG++Y  N   I
Sbjct: 350 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE-I 409

Query: 69  IEHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVL---KGATIGKIDFGEHYIFGK 128
            +    A+  E ++  LWH R+GH  +K LQ L  + ++   KG T+   D+    +FGK
Sbjct: 410 CQGELNAAQDEISVD-LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDY---CLFGK 469

Query: 129 QKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMYPMRHKNE 188
           Q  V F T+  +   ILD V++DV GP +  S+GG ++FVTFIDD SR++W+Y ++ K++
Sbjct: 470 QHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQ 529

Query: 189 VLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTVPGKPQQNGV 248
           V Q+FQ++  +VE +T RK+KRLRSDNGGEY    F + C   GI    TVPG PQ NGV
Sbjct: 530 VFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGV 589

Query: 249 AERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLPVSENGGKIPLEVMVPETSE 308
           AERMN+T++E VR +L  A L K+FW EA+  A +L+NR P       +PL   +PE   
Sbjct: 590 AERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSP------SVPLAFEIPE--R 649

Query: 309 IVNSRDVTFDESGMF 321
           +  +++V++    +F
Sbjct: 650 VWTNKEVSYSHLKVF 651

[Close]

BLAST of CmaCh09G011020 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-33
Identity = 88/286 (30.77%), Postives = 144/286 (50.35%), Query Frame = 1


Query: 9   LNDLRYAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTI 68
           L D+ +  +    L+ +  L  +G  I  +   + +++  L+ +K +       LN   +
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM-----LNNVPV 404

Query: 69  IE-HATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGK-----IDFGEHYI 128
           I   A   ++K +N  +LWH R GH  D  L  +  + +    ++        +  E  +
Sbjct: 405 INFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCL 464

Query: 129 FGKQKNVKFCTAIHQT--KGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMYPM 188
            GKQ  + F     +T  K  L  VH+DV GP   V+L  K +FV F+D ++     Y +
Sbjct: 465 NGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLI 524

Query: 189 RHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTVPGKP 248
           ++K++V  +FQ++    E   N K+  L  DNG EY  +   + C  +GI  H TVP  P
Sbjct: 525 KYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTP 584

Query: 249 QQNGVAERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLP 287
           Q NGV+ERM +T+ E  R ++S A L K+FW EA+  A +L+NR+P
Sbjct: 585 QLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIP 625

[Close]

BLAST of CmaCh09G011020 vs. Swiss-Prot
Match: YO22B_YEAST (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-21
Identity = 71/299 (23.75%), Postives = 133/299 (44.48%), Query Frame = 1


Query: 14  YAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTII-EHA 73
           + P++   L+ L  L             L+ + G ++A    + G  Y+L+   +I  H 
Sbjct: 514 HTPNIAYDLLSLSELTNQNITACFTRNTLERSDGTVLA-PIVKHGDFYWLSKKYLIPSHI 573

Query: 74  TMASSKEQNISK--------LWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFGEHYIFG 133
           +  +    N SK        L H  LGHA  +++Q  + +  +       I++     + 
Sbjct: 574 SKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQ 633

Query: 134 ----------KQKNVKFCTAIHQTK-GILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSR 193
                     K ++VK     +Q       Y+HTD++GP  ++      +F++F D+ +R
Sbjct: 634 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 693

Query: 194 RVWMYPMRHKNE--VLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGII 253
             W+YP+  + E  +L +F      ++NQ N ++  ++ D G EY      K   + GI 
Sbjct: 694 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 753

Query: 254 RHFTVPGKPQQNGVAERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLPVSEN 291
             +T     + +GVAER+N+TL+ + R +L  +GL    W  A+ ++  + N L   +N
Sbjct: 754 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKN 811

[Close]

BLAST of CmaCh09G011020 vs. Swiss-Prot
Match: YO21B_YEAST (Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-20
Identity = 71/299 (23.75%), Postives = 133/299 (44.48%), Query Frame = 1


Query: 14  YAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTII-EHA 73
           + P++   L+ L  L             L+ + G ++A    + G  Y+L+   +I  H 
Sbjct: 514 HTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLA-PIVKHGDFYWLSKKYLIPSHI 573

Query: 74  TMASSKEQNISK--------LWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFGEHYIFG 133
           +  +    N SK        L H  LGHA  +++Q  + +  +       I++     + 
Sbjct: 574 SKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQ 633

Query: 134 ----------KQKNVKFCTAIHQTK-GILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSR 193
                     K ++VK     +Q       Y+HTD++GP  ++      +F++F D+ +R
Sbjct: 634 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 693

Query: 194 RVWMYPMRHKNE--VLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGII 253
             W+YP+  + E  +L +F      ++NQ N ++  ++ D G EY      K   + GI 
Sbjct: 694 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 753

Query: 254 RHFTVPGKPQQNGVAERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLPVSEN 291
             +T     + +GVAER+N+TL+ + R +L  +GL    W  A+ ++  + N L   +N
Sbjct: 754 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKN 811

[Close]

BLAST of CmaCh09G011020 vs. Swiss-Prot
Match: YL22B_YEAST (Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR2 PE=5 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-20
Identity = 71/299 (23.75%), Postives = 133/299 (44.48%), Query Frame = 1


Query: 14  YAPDLKKKLIFLGVLDASGYRIILEGGNLKVARGALVAIKGTRRGSIYYLNGTTII-EHA 73
           + P++   L+ L  L             L+ + G ++A    + G  Y+L+   +I  H 
Sbjct: 514 HTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLA-PIVKHGDFYWLSKKYLIPSHI 573

Query: 74  TMASSKEQNISK--------LWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFGEHYIFG 133
           +  +    N SK        L H  LGHA  +++Q  + +  +       I++     + 
Sbjct: 574 SKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQ 633

Query: 134 ----------KQKNVKFCTAIHQTK-GILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSR 193
                     K ++VK     +Q       Y+HTD++GP  ++      +F++F D+ +R
Sbjct: 634 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 693

Query: 194 RVWMYPMRHKNE--VLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGII 253
             W+YP+  + E  +L +F      ++NQ N ++  ++ D G EY      K   + GI 
Sbjct: 694 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 753

Query: 254 RHFTVPGKPQQNGVAERMNQTLIENVRCILSQAGLSKAFWAEALSYAVHLVNRLPVSEN 291
             +T     + +GVAER+N+TL+ + R +L  +GL    W  A+ ++  + N L   +N
Sbjct: 754 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKN 811

[Close]

BLAST of CmaCh09G011020 vs. TrEMBL
Match: A0A077SK66_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118
Identity = 238/501 (47.50%), Postives = 307/501 (61.28%), Query Frame = 1


Query: 433 LSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIGSIQIKM 492
           +S S  S   EWILD GC+YHM   R+ F +F+E +GGVVYMGND+ C   GIGSI+++ 
Sbjct: 213 VSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRN 272

Query: 493 FDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGTRRGSIY 552
            D   R L D+RY P LKK LI LG L++ G  + +  G LK   GALV +KG  + ++Y
Sbjct: 273 HDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLY 332

Query: 553 YLNGTTII---EHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFG 612
           Y  G+T++     AT +S K+   +KLWHMRLGHAG+K+LQ L  QG+LKG    K++F 
Sbjct: 333 YYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFC 392

Query: 613 EHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMY 672
           EH + GKQ+ VKF TAIH TKGILDYVH+DVWGP K  S+GG+ +FVTF+DD+SRRVW++
Sbjct: 393 EHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVF 452

Query: 673 PMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTSCY 732
            M++KN+VL+IF +WK  VEN T RKIK L++DNGGEY  DPFL VC+D GI+RHFT   
Sbjct: 453 TMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRK 512

Query: 733 AVH-----------LVNRLPVSENGGKIPLEVWSGT-----------PVSD--------- 792
                         LV ++    +  ++  E W+             P S          
Sbjct: 513 TPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 572

Query: 793 --------YDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLETSEIVNS 852
                   YD LHVFG  AYYHV +SKLD  AKKA FMGFS GVKGYRLWCLE  + + S
Sbjct: 573 WSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIIS 632

Query: 853 RDVTFDESGMFLQKI--ENNDEALKQVE----KVVFSPDMVAPTEELIDQVDNNSDVLEQ 886
           RDVTFDES M L+K+  E  D   +QVE    +V F P +V PT        ++S + E+
Sbjct: 633 RDVTFDESVM-LKKVNPEGTDSTPQQVECVRKQVEFEPTVVIPTR----NTTSDSPMAEE 692

[Close]

BLAST of CmaCh09G011020 vs. TrEMBL
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_030746 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.3e-114
Identity = 240/517 (46.42%), Postives = 310/517 (59.96%), Query Frame = 1


Query: 427 SECGESLSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIG 486
           S+C  ++S S  S +S W+LD GCS HM  NRE F DF+E   GVVY  ND      GIG
Sbjct: 57  SDCSLAVSGS-TSSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIG 116

Query: 487 SIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGT 546
           SI++K  D  IR L D+R+ P L + LI +G L+  GF +  EGG +K+  GALV +KG 
Sbjct: 117 SIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGV 176

Query: 547 RRGS-IYYLNGTTIIEHATMASSKEQNI--SKLWHMRLGHAGDKALQTLVNQGVLKGATI 606
           R+ + +YY  GTTII  A +ASS E+ +  +KLWHMRLGHAG+++L  L+ QG+LK    
Sbjct: 177 RKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQA 236

Query: 607 GKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYS 666
            K+DF EH + GK+  VKF TAIH TKGILDYVH+DVWGP+K  SL G  ++VTF+DD+S
Sbjct: 237 CKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFS 296

Query: 667 RRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLR----------------------- 726
           RR+W+Y M+ K+EVL IF +WKK +E QT RKIK  R                       
Sbjct: 297 RRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVR 356

Query: 727 --------SDNG-GEYPYDPFLKVCR----DEGIIRHFTS---CYAVHLVNRLPVSENGG 786
                     NG  E      L+  R    + G+ + F +    YA HL+NRLP S  GG
Sbjct: 357 HFTVKHTPQQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGG 416

Query: 787 KIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLET 846
           K PLE W G P +DYD LHVFGC AYYHV +SKLD  AKKA FMG + GVKGYRLWCLET
Sbjct: 417 KTPLEKWFGKPATDYDSLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLET 476

Query: 847 SEIVNSRDVTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPT--EELIDQVDNNSDVL 900
            + + SRDVTFDES M L K+    +     ++V F   +V P   EE    VD  SD  
Sbjct: 477 KKTIISRDVTFDESTM-LGKVTTEQKKNGTPKQVEFERKIVFPANDEEKTPMVDEESD-- 536

[Close]

BLAST of CmaCh09G011020 vs. TrEMBL
Match: A0A068VDJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 1.0e-111
Identity = 234/510 (45.88%), Postives = 306/510 (60.00%), Query Frame = 1


Query: 427 SECGESLSKSRV-SQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGI 486
           +E   SL+ SR+ S   EWILD  C+YHM   RE F +F+E +GG VYMGND+ C   GI
Sbjct: 291 AESDFSLAVSRLTSHPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGI 350

Query: 487 GSIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKG 546
           GSI+++  D   R L D+RY P+LK+ LI LG+L++ G  + +  G LKV  GAL+ +KG
Sbjct: 351 GSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKG 410

Query: 547 TRRGSIYYLNGTTIIEHATMASS----KEQNISKLWHMRLGHAGDKALQTLVNQGVLKGA 606
            R+ ++YY  G+T++  A +A+S    K+   +KLWHMRLG AG+K+LQ L  QG+LKG 
Sbjct: 411 VRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGT 470

Query: 607 TIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDD 666
            + K++F EH +  KQ+ VKF T IH TKGILDYVH+DVWGP K  SLGG+ +FVTFIDD
Sbjct: 471 KVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDD 530

Query: 667 YSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIK--------RLRSD-------NGGE 726
           +SRRVW++ M+ K+E+L+IF +WK  VENQT RKIK          +SD         G 
Sbjct: 531 FSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQKICQECGI 590

Query: 727 YPYDPFLKVCRDEGIIRHFTSC------------------------YAVHLVNRLPVSEN 786
             +    K+ +  G+  H                            YA HLVNRLP S  
Sbjct: 591 VRHFIVRKIPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAI 650

Query: 787 GGKIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCL 846
           GGK PLEVWSG   +DYD L +F   AYYHV +SKLD  AKKA FMGFS GVKGYRLW L
Sbjct: 651 GGKTPLEVWSGKLATDYDSLRIFDSTAYYHVNESKLDPRAKKALFMGFSAGVKGYRLWYL 710

Query: 847 ETSEIVNSRDVTFDESGMFLQKI--ENNDEALKQVE----KVVFSPDMVAPTEELIDQVD 887
           E  + + SRDVTFDES M L KI  +      +QVE    +V F   +V+P    I    
Sbjct: 711 EAKKTIISRDVTFDESVM-LNKITQDGTSGTPQQVECTPKQVEFEQIVVSPANSTISDSP 770

[Close]

BLAST of CmaCh09G011020 vs. TrEMBL
Match: Q7XTM9_ORYSJ (OSJNBa0033G05.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0033G05.13 PE=4 SV=2)

HSP 1 Score: 371.3 bits (952), Expect = 3.4e-99
Identity = 237/665 (35.64%), Postives = 357/665 (53.68%), Query Frame = 1


Query: 304 SEIVNSRD-VTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPTEELIDQIDDKDKTTL 363
           S   N RD + +    + L+++ +   A ++++K+V S    +  E L+ +   ++K T 
Sbjct: 153 SSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTN 212

Query: 364 LLNSLLESYEFLVTTLLHGAYDI------DFEDVSNALMNNEVRKKEKEAYQDSSSNVLT 423
             +    S  +   +   G Y        D  D+S      + + K    Y         
Sbjct: 213 NKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQD-KDKRTGKYIPKGKKEEE 272

Query: 424 AREMTSTWKRSECGESLSKSRVSQTSE-WILDFGCSYHMYSNREMFLDFKEFNGGVVYMG 483
            +    T ++S+    ++ +  +QTS+ WILD  C+YHM  NR+ F  ++   GG V MG
Sbjct: 273 GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMG 332

Query: 484 NDSTCNMTGIGSIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKV 543
           +D+ C + GIG++QIKMFD  IR L+D+R+ P+LK+ LI L  LD  G++     G LKV
Sbjct: 333 DDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 392

Query: 544 ARGALVAIKGT-RRGSIYYLNGTTIIEHATMASSKEQN--ISKLWHMRLGHAGDKALQTL 603
            +G+LV +K + +  ++Y+L GTTI+ +    S    N   + LWHMRLGH  +  L  L
Sbjct: 393 TKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAEL 452

Query: 604 VNQGVLKGATIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGK 663
             +G+L G +I K+ F EH IFGK K VKF T+ H T+GILDYVH+D+WGP +  S GG 
Sbjct: 453 SKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 512

Query: 664 RWFVTFIDDYSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPF 723
           R+ +T +DDYSR+VW Y ++HK +   +F+EWK MVE QT RK+K LR+DNG E+    F
Sbjct: 513 RYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 572

Query: 724 LKVCRDEGIIRHFTSCY---------------------------------------AVHL 783
              C+ EGI+RH+T  +                                       A +L
Sbjct: 573 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYL 632

Query: 784 VNRLPVSENGGKIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKG 843
           +NR P   N  K P+EVWSG+P ++Y  L VFGC AY HV + KL+  A K  F+G+   
Sbjct: 633 INRSPSYAN-KKTPIEVWSGSP-ANYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSS 692

Query: 844 VKGYRLWCLETSEIVNSRDVTFDESGMFLQK------IENNDEALKQVEKVVFSPDMVAP 903
           VKGY+LWC ET ++V SR+V F ES M   K      +E+ ++A  QVE ++ S    AP
Sbjct: 693 VKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKASVQVEHLINSGH--AP 752

Query: 904 TEELIDQVDNNSDVLEQEKQSLVNERVEEHESIDKNRPRRIFIIQIHHHKMLRKEHKEDK 913
            +E +  ++ ++ V+E    S V +      SI K++P+R   ++ +H   L K  KE K
Sbjct: 753 EKEDV-AINQDAPVIEDSDSSTVQQ--SPKRSIAKDKPKRNKELEKNHTWELVKLPKEKK 809

[Close]

BLAST of CmaCh09G011020 vs. TrEMBL
Match: A5BE52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039063 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.7e-98
Identity = 213/507 (42.01%), Postives = 289/507 (57.00%), Query Frame = 1


Query: 428  ECGESLSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIGS 487
            E G+ L+ S  S    WILD G SYHM  +R++F  FKE+NG V  +G+D    + G GS
Sbjct: 604  EGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVK-LGDDGELGVKGSGS 663

Query: 488  IQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGTR 547
            +QIKM+D ++R LN   Y P L+K LI +G LD +G+     GG L+V++GALV +KG  
Sbjct: 664  VQIKMYDGLVRTLNAW-YVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRL 723

Query: 548  RGSIYYLNGTTIIEHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKID 607
            +  IY L G++++  A +   +E N ++LWH RLGH  +K L  L  QG+L GA  GK+ 
Sbjct: 724  QHGIYTLMGSSVLGTAAV---EEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLK 783

Query: 608  FGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVW 667
            F E  + GKQ+ VKF    H T G+L+Y+H+D+WGP+   S  G R++VTFIDD+SR+VW
Sbjct: 784  FCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVW 843

Query: 668  MYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTS 727
            +Y ++ K+EV   F+EWK MVE +T + +K LR+DNG E+    F + CR EGI+RH T 
Sbjct: 844  VYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTV 903

Query: 728  CY---------------------------------------AVHLVNRLPVSENGGKIPL 787
             +                                       A +LVNR P +    K P 
Sbjct: 904  RHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQ 963

Query: 788  EVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLE--TSE 847
            EVWSG P S+Y  L +FGCPAY HV+D KL+  A K  F+G++ GVKGYRLWC E  T +
Sbjct: 964  EVWSGKP-SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPK 1023

Query: 848  IVNSRDVTFDESGMFLQKIENNDEA------LKQVEKVVFSPDMVAPTEELIDQVDNNSD 888
             + SRDVTFDES MF Q+ E  D A      L   +KV F  D  AP E  +D       
Sbjct: 1024 FIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVD--APMENGVDDTSEEQP 1083

[Close]

BLAST of CmaCh09G011020 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 90.5 bits (223), Expect = 5.8e-18
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 40  GNLKVARGALVAIKGTRRGSIYYLNGTTIIEHATMASSKEQNISKLWHMRLGHAGDKALQ 99
           G LKV +G    +KG R  S+Y L G+     + +A + +   ++LWH RL H   + ++
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDE-TRLWHSRLAHMSQRGME 86

Query: 100 TLVNQGVLKGATIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWG 152
            LV +G L  + +  + F E  I+GK   V F T  H TK  LDYVH+D+WG
Sbjct: 87  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

[Close]

BLAST of CmaCh09G011020 vs. NCBI nr
Match: gi|670449696|emb|CDN96898.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 434.5 bits (1116), Expect = 4.6e-118
Identity = 238/501 (47.50%), Postives = 307/501 (61.28%), Query Frame = 1


Query: 433 LSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIGSIQIKM 492
           +S S  S   EWILD GC+YHM   R+ F +F+E +GGVVYMGND+ C   GIGSI+++ 
Sbjct: 213 VSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRN 272

Query: 493 FDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGTRRGSIY 552
            D   R L D+RY P LKK LI LG L++ G  + +  G LK   GALV +KG  + ++Y
Sbjct: 273 HDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLY 332

Query: 553 YLNGTTII---EHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKIDFG 612
           Y  G+T++     AT +S K+   +KLWHMRLGHAG+K+LQ L  QG+LKG    K++F 
Sbjct: 333 YYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFC 392

Query: 613 EHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVWMY 672
           EH + GKQ+ VKF TAIH TKGILDYVH+DVWGP K  S+GG+ +FVTF+DD+SRRVW++
Sbjct: 393 EHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVF 452

Query: 673 PMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTSCY 732
            M++KN+VL+IF +WK  VEN T RKIK L++DNGGEY  DPFL VC+D GI+RHFT   
Sbjct: 453 TMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRK 512

Query: 733 AVH-----------LVNRLPVSENGGKIPLEVWSGT-----------PVSD--------- 792
                         LV ++    +  ++  E W+             P S          
Sbjct: 513 TPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 572

Query: 793 --------YDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLETSEIVNS 852
                   YD LHVFG  AYYHV +SKLD  AKKA FMGFS GVKGYRLWCLE  + + S
Sbjct: 573 WSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIIS 632

Query: 853 RDVTFDESGMFLQKI--ENNDEALKQVE----KVVFSPDMVAPTEELIDQVDNNSDVLEQ 886
           RDVTFDES M L+K+  E  D   +QVE    +V F P +V PT        ++S + E+
Sbjct: 633 RDVTFDESVM-LKKVNPEGTDSTPQQVECVRKQVEFEPTVVIPTR----NTTSDSPMAEE 692

[Close]

BLAST of CmaCh09G011020 vs. NCBI nr
Match: gi|1012336336|gb|KYP47640.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 422.5 bits (1085), Expect = 1.8e-114
Identity = 240/517 (46.42%), Postives = 310/517 (59.96%), Query Frame = 1


Query: 427 SECGESLSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIG 486
           S+C  ++S S  S +S W+LD GCS HM  NRE F DF+E   GVVY  ND      GIG
Sbjct: 57  SDCSLAVSGS-TSSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIG 116

Query: 487 SIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGT 546
           SI++K  D  IR L D+R+ P L + LI +G L+  GF +  EGG +K+  GALV +KG 
Sbjct: 117 SIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGV 176

Query: 547 RRGS-IYYLNGTTIIEHATMASSKEQNI--SKLWHMRLGHAGDKALQTLVNQGVLKGATI 606
           R+ + +YY  GTTII  A +ASS E+ +  +KLWHMRLGHAG+++L  L+ QG+LK    
Sbjct: 177 RKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQA 236

Query: 607 GKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYS 666
            K+DF EH + GK+  VKF TAIH TKGILDYVH+DVWGP+K  SL G  ++VTF+DD+S
Sbjct: 237 CKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFS 296

Query: 667 RRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLR----------------------- 726
           RR+W+Y M+ K+EVL IF +WKK +E QT RKIK  R                       
Sbjct: 297 RRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVR 356

Query: 727 --------SDNG-GEYPYDPFLKVCR----DEGIIRHFTS---CYAVHLVNRLPVSENGG 786
                     NG  E      L+  R    + G+ + F +    YA HL+NRLP S  GG
Sbjct: 357 HFTVKHTPQQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGG 416

Query: 787 KIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLET 846
           K PLE W G P +DYD LHVFGC AYYHV +SKLD  AKKA FMG + GVKGYRLWCLET
Sbjct: 417 KTPLEKWFGKPATDYDSLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLET 476

Query: 847 SEIVNSRDVTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPT--EELIDQVDNNSDVL 900
            + + SRDVTFDES M L K+    +     ++V F   +V P   EE    VD  SD  
Sbjct: 477 KKTIISRDVTFDESTM-LGKVTTEQKKNGTPKQVEFERKIVFPANDEEKTPMVDEESD-- 536

[Close]

BLAST of CmaCh09G011020 vs. NCBI nr
Match: gi|661878516|emb|CDP17738.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 412.9 bits (1060), Expect = 1.4e-111
Identity = 234/510 (45.88%), Postives = 306/510 (60.00%), Query Frame = 1


Query: 427 SECGESLSKSRV-SQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGI 486
           +E   SL+ SR+ S   EWILD  C+YHM   RE F +F+E +GG VYMGND+ C   GI
Sbjct: 291 AESDFSLAVSRLTSHPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGI 350

Query: 487 GSIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKG 546
           GSI+++  D   R L D+RY P+LK+ LI LG+L++ G  + +  G LKV  GAL+ +KG
Sbjct: 351 GSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKG 410

Query: 547 TRRGSIYYLNGTTIIEHATMASS----KEQNISKLWHMRLGHAGDKALQTLVNQGVLKGA 606
            R+ ++YY  G+T++  A +A+S    K+   +KLWHMRLG AG+K+LQ L  QG+LKG 
Sbjct: 411 VRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGT 470

Query: 607 TIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDD 666
            + K++F EH +  KQ+ VKF T IH TKGILDYVH+DVWGP K  SLGG+ +FVTFIDD
Sbjct: 471 KVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDD 530

Query: 667 YSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIK--------RLRSD-------NGGE 726
           +SRRVW++ M+ K+E+L+IF +WK  VENQT RKIK          +SD         G 
Sbjct: 531 FSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQKICQECGI 590

Query: 727 YPYDPFLKVCRDEGIIRHFTSC------------------------YAVHLVNRLPVSEN 786
             +    K+ +  G+  H                            YA HLVNRLP S  
Sbjct: 591 VRHFIVRKIPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAI 650

Query: 787 GGKIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCL 846
           GGK PLEVWSG   +DYD L +F   AYYHV +SKLD  AKKA FMGFS GVKGYRLW L
Sbjct: 651 GGKTPLEVWSGKLATDYDSLRIFDSTAYYHVNESKLDPRAKKALFMGFSAGVKGYRLWYL 710

Query: 847 ETSEIVNSRDVTFDESGMFLQKI--ENNDEALKQVE----KVVFSPDMVAPTEELIDQVD 887
           E  + + SRDVTFDES M L KI  +      +QVE    +V F   +V+P    I    
Sbjct: 711 EAKKTIISRDVTFDESVM-LNKITQDGTSGTPQQVECTPKQVEFEQIVVSPANSTISDSP 770

[Close]

BLAST of CmaCh09G011020 vs. NCBI nr
Match: gi|38344889|emb|CAD41912.2| (OSJNBa0033G05.13 [Oryza sativa Japonica Group])

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-99
Identity = 237/665 (35.64%), Postives = 357/665 (53.68%), Query Frame = 1


Query: 304 SEIVNSRD-VTFDESGMFLQKIENNDEALKQVEKVVFSPDMVAPTEELIDQIDDKDKTTL 363
           S   N RD + +    + L+++ +   A ++++K+V S    +  E L+ +   ++K T 
Sbjct: 153 SSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTN 212

Query: 364 LLNSLLESYEFLVTTLLHGAYDI------DFEDVSNALMNNEVRKKEKEAYQDSSSNVLT 423
             +    S  +   +   G Y        D  D+S      + + K    Y         
Sbjct: 213 NKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQD-KDKRTGKYIPKGKKEEE 272

Query: 424 AREMTSTWKRSECGESLSKSRVSQTSE-WILDFGCSYHMYSNREMFLDFKEFNGGVVYMG 483
            +    T ++S+    ++ +  +QTS+ WILD  C+YHM  NR+ F  ++   GG V MG
Sbjct: 273 GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMG 332

Query: 484 NDSTCNMTGIGSIQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKV 543
           +D+ C + GIG++QIKMFD  IR L+D+R+ P+LK+ LI L  LD  G++     G LKV
Sbjct: 333 DDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 392

Query: 544 ARGALVAIKGT-RRGSIYYLNGTTIIEHATMASSKEQN--ISKLWHMRLGHAGDKALQTL 603
            +G+LV +K + +  ++Y+L GTTI+ +    S    N   + LWHMRLGH  +  L  L
Sbjct: 393 TKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAEL 452

Query: 604 VNQGVLKGATIGKIDFGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGK 663
             +G+L G +I K+ F EH IFGK K VKF T+ H T+GILDYVH+D+WGP +  S GG 
Sbjct: 453 SKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 512

Query: 664 RWFVTFIDDYSRRVWMYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPF 723
           R+ +T +DDYSR+VW Y ++HK +   +F+EWK MVE QT RK+K LR+DNG E+    F
Sbjct: 513 RYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 572

Query: 724 LKVCRDEGIIRHFTSCY---------------------------------------AVHL 783
              C+ EGI+RH+T  +                                       A +L
Sbjct: 573 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYL 632

Query: 784 VNRLPVSENGGKIPLEVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKG 843
           +NR P   N  K P+EVWSG+P ++Y  L VFGC AY HV + KL+  A K  F+G+   
Sbjct: 633 INRSPSYAN-KKTPIEVWSGSP-ANYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSS 692

Query: 844 VKGYRLWCLETSEIVNSRDVTFDESGMFLQK------IENNDEALKQVEKVVFSPDMVAP 903
           VKGY+LWC ET ++V SR+V F ES M   K      +E+ ++A  QVE ++ S    AP
Sbjct: 693 VKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKASVQVEHLINSGH--AP 752

Query: 904 TEELIDQVDNNSDVLEQEKQSLVNERVEEHESIDKNRPRRIFIIQIHHHKMLRKEHKEDK 913
            +E +  ++ ++ V+E    S V +      SI K++P+R   ++ +H   L K  KE K
Sbjct: 753 EKEDV-AINQDAPVIEDSDSSTVQQ--SPKRSIAKDKPKRNKELEKNHTWELVKLPKEKK 809

[Close]

BLAST of CmaCh09G011020 vs. NCBI nr
Match: gi|147769855|emb|CAN61272.1| (hypothetical protein VITISV_039063 [Vitis vinifera])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 213/507 (42.01%), Postives = 289/507 (57.00%), Query Frame = 1


Query: 428  ECGESLSKSRVSQTSEWILDFGCSYHMYSNREMFLDFKEFNGGVVYMGNDSTCNMTGIGS 487
            E G+ L+ S  S    WILD G SYHM  +R++F  FKE+NG V  +G+D    + G GS
Sbjct: 604  EGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVK-LGDDGELGVKGSGS 663

Query: 488  IQIKMFDKVIRKLNDLRYAPDLKKKLIFLGVLDASGFRIILEGGNLKVARGALVAIKGTR 547
            +QIKM+D ++R LN   Y P L+K LI +G LD +G+     GG L+V++GALV +KG  
Sbjct: 664  VQIKMYDGLVRTLNAW-YVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRL 723

Query: 548  RGSIYYLNGTTIIEHATMASSKEQNISKLWHMRLGHAGDKALQTLVNQGVLKGATIGKID 607
            +  IY L G++++  A +   +E N ++LWH RLGH  +K L  L  QG+L GA  GK+ 
Sbjct: 724  QHGIYTLMGSSVLGTAAV---EEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLK 783

Query: 608  FGEHYIFGKQKNVKFCTAIHQTKGILDYVHTDVWGPTKNVSLGGKRWFVTFIDDYSRRVW 667
            F E  + GKQ+ VKF    H T G+L+Y+H+D+WGP+   S  G R++VTFIDD+SR+VW
Sbjct: 784  FCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVW 843

Query: 668  MYPMRHKNEVLQIFQEWKKMVENQTNRKIKRLRSDNGGEYPYDPFLKVCRDEGIIRHFTS 727
            +Y ++ K+EV   F+EWK MVE +T + +K LR+DNG E+    F + CR EGI+RH T 
Sbjct: 844  VYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTV 903

Query: 728  CY---------------------------------------AVHLVNRLPVSENGGKIPL 787
             +                                       A +LVNR P +    K P 
Sbjct: 904  RHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQ 963

Query: 788  EVWSGTPVSDYDKLHVFGCPAYYHVTDSKLDSIAKKAKFMGFSKGVKGYRLWCLE--TSE 847
            EVWSG P S+Y  L +FGCPAY HV+D KL+  A K  F+G++ GVKGYRLWC E  T +
Sbjct: 964  EVWSGKP-SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPK 1023

Query: 848  IVNSRDVTFDESGMFLQKIENNDEA------LKQVEKVVFSPDMVAPTEELIDQVDNNSD 888
             + SRDVTFDES MF Q+ E  D A      L   +KV F  D  AP E  +D       
Sbjct: 1024 FIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVD--APMENGVDDTSEEQP 1083

The following BLAST results are available for this feature:

BLAST of CmaCh09G011020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.6e-62	40.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	6.0e-33	30.77	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YO22B_YEAST	9.0e-21	23.75	Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YO21B_YEAST	1.2e-20	23.75	Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YL22B_YEAST	1.2e-20	23.75	Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmaCh09G011020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A077SK66_PHAVU	3.2e-118	47.50	Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1	[more]
A0A151RYL1_CAJCA	1.3e-114	46.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A068VDJ5_COFCA	1.0e-111	45.88	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1	[more]
Q7XTM9_ORYSJ	3.4e-99	35.64	OSJNBa0033G05.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0033G05.13 PE=...	[more]
A5BE52_VITVI	1.7e-98	42.01	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039063 PE=4 SV=1	[more]

BLAST of CmaCh09G011020 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00300.1	5.8e-18	37.50	ATMG00300.1 Gag-Pol-related retrotransposon family protein	[more]

BLAST of CmaCh09G011020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|670449696\|emb\|CDN96898.1\|	4.6e-118	47.50	putative Ty-1 copia retrotransposon [Phaseolus vulgaris]	[more]
gi\|1012336336\|gb\|KYP47640.1\|	1.8e-114	46.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|661878516\|emb\|CDP17738.1\|	1.4e-111	45.88	unnamed protein product [Coffea canephora]	[more]
gi\|38344889\|emb\|CAD41912.2\|	4.8e-99	35.64	OSJNBa0033G05.13 [Oryza sativa Japonica Group]	[more]
gi\|147769855\|emb\|CAN61272.1\|	2.4e-98	42.01	hypothetical protein VITISV_039063 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR025724	GAG-pre-integrase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011020.1	CmaCh09G011020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 143..254 score: 1.7E-22coord: 634..727 score: 9.7
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 135..303 score: 23.557coord: 626..721 score: 10
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 630..729 score: 5.0E-15coord: 139..295 score: 1.3
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 634..755 score: 9.56E-20coord: 140..297 score: 1.19
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 551..617 score: 1.9E-12coord: 60..126 score: 1.9
None	No IPR available	unknown	Coil	Coil	coord: 852..872 scor
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 352..906 score: 1.8E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 352..906 score: 1.8E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 352..404 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G011020	MELO3C030135.2	Melon (DHL92) v3.6.1	cmamedB027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011020	Cucumber (Gy14) v1	cgycmaB0133
CmaCh09G011020	Cucurbita moschata (Rifu)	cmacmoB048
CmaCh09G011020	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011020	Wild cucumber (PI 183967)	cmacpiB045
CmaCh09G011020	Cucumber (Chinese Long) v2	cmacuB043
CmaCh09G011020	Melon (DHL92) v3.5.1	cmameB019
CmaCh09G011020	Watermelon (Charleston Gray)	cmawcgB008
CmaCh09G011020	Watermelon (97103) v1	cmawmB010
CmaCh09G011020	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011020	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G011020	Bottle gourd (USVL1VR-Ls)	cmalsiB019
CmaCh09G011020	Cucumber (Gy14) v2	cgybcmaB887
CmaCh09G011020	Silver-seed gourd	carcmaB0382
CmaCh09G011020	Cucumber (Chinese Long) v3	cmacucB0053
CmaCh09G011020	Watermelon (97103) v2	cmawmbB049
CmaCh09G011020	Wax gourd	cmawgoB0031
CmaCh09G011020	Wax gourd	cmawgoB0043
CmaCh09G011020	Cucurbita maxima (Rimu)	cmacmaB052