CmaCh09G010720 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G010720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L2
LocationCma_Chr09 : 5639951 .. 5641174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAGCACAAATCCACAGACCAGATTCACTGTAGACTTAAAAATGTAACAGCCCAGATGCACCGTAGGTATAAAAATGTAACAGCCCAAATGCATTGTAGGTTTAAAAATGTAGCCGCCTAGATTTGTTAGCAGATTAGGGTTTAGGGTTTAGGTTCATCGGTAGCATATATTGTCGTCTTTGGATTTGTCCGAAATTTATAATTAAATCTTAAAATTTATATTAGGTTAAAAAATGTATATTGTCTTTTTGGGTTTTCCGCATCCTTATTAAAAGGTTTATAAAATGTGTTTTGTTCTCGTCCCTAACTAATGTGAAACATTACAATCTACCCCTCTTTAGGATTAGTGTCGTCGCTGGCATTCGTTCTTTTCTTCTCCCAACCAATGTGGGTTATAAAGGGTTTCCGTACCCTTATTAAAGGGTTATAAAGGGTGTTTTGTTTTCCTCCCAACTAATGTGGAACATCACAATCCACCCCGTTCGAGGCCCAGCGTTGTCGCTAACACTCAACACTCATTTCTTTCTTTAATCGATGTGGCACCCCCCACCAACAAGGCTTTATAAACGATGTTTTGTTCTCCTCCTCAATCAACGTCCCGACATTACAAAAAATATATAATATTTGCAATAAAAGAAGGTGAATAAATAGTTTTTGGAATTTAGAATAGGAAATGGGTCAACACGTTGTCCAAGTCCCCAACAAAGGGAAATTTCATGCCTAATTTAAACAAGATTCCCTATCCCATCCAATCTTTGTCACAATTTCCCCTTATCACCTCATTATTACTATTAATATTCAAACTCGACCACACTATAGTGTTTATAAATTTCAAAAGTTATCGAACTAAAATAAATATTATTATTAAACAAATATATGTAACTCTGTATGTGAAGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCATCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGA

mRNA sequence

ATGGAACAGCACAAATCCACAGACCAGATTCACTGTAGACTTAAAAATGTAACAGCCCAGATGCACCGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCATCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGA

Coding sequence (CDS)

ATGGAACAGCACAAATCCACAGACCAGATTCACTGTAGACTTAAAAATGTAACAGCCCAGATGCACCGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCATCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGA

Protein sequence

MEQHKSTDQIHCRLKNVTAQMHRGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Homology
[Close]
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.7e-55
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.7e-55
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.7e-55
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 111/127 (87.40%), Postives = 115/127 (90.55%), Query Frame = 1 

Query: 6   STDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 65
           STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT
Sbjct: 131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 190

Query: 66  VGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 125
           VGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG
Sbjct: 191 VGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250

Query: 126 YPALGRR 131
           YPALGRR
Sbjct: 251 YPALGRR 257

[Close]
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-54
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. TrEMBL
Match: A0A0N9Q057_POPCN (50S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 139 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 198

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 199 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 258

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 259 TPWGYPALGRR 269

[Close]
BLAST of CmaCh09G010720 vs. TrEMBL
Match: A0A0N9Q032_POPCN (50S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 140 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 199

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 200 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 259

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 260 TPWGYPALGRR 270

[Close]
BLAST of CmaCh09G010720 vs. TrEMBL
Match: A0A076MPN3_POPEU (50S ribosomal protein L2, chloroplastic OS=Populus euphratica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 139 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 198

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 199 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 258

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 259 TPWGYPALGRR 269

[Close]
BLAST of CmaCh09G010720 vs. TrEMBL
Match: A0A0D4WNR1_POPTN (50S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 140 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 199

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 200 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 259

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 260 TPWGYPALGRR 270

[Close]
BLAST of CmaCh09G010720 vs. TrEMBL
Match: A0A0D4WQL2_POPTN (50S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 139 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 198

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 199 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 258

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 259 TPWGYPALGRR 269

[Close]
BLAST of CmaCh09G010720 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 211.1 bits (536), Expect = 4.2e-55
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 211.1 bits (536), Expect = 4.2e-55
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSK
Sbjct: 150 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSK 209

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPALGRR
Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPALGRR 256

[Close]
BLAST of CmaCh09G010720 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 1 

Query: 20  QMHRGQ---LARAAGAVAKLIAKEGKS-ATLKLPSGEVRLISKNCSATVGQVGNAGVNQK 79
           +M+ GQ   + RAAG  AK++ +  K    +KLPSG+ + I+  C AT+G V N     K
Sbjct: 78  EMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTK 137

Query: 80  SLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PWGYPALG 129
            L +AG   WLG  P VRGV MNP DHPHGGGEG++     +  T   PWG P  G
Sbjct: 138 KLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWGKPCKG 193

[Close]
BLAST of CmaCh09G010720 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-14
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1 

Query: 23  RGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRA 82
           RG LARA+G  A +IA   +S T  +KLPSG  +++   C A +GQV   G  +K L +A
Sbjct: 124 RGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPLLKA 183

Query: 83  GS---------KCWLGKHPVVRGVVMNPVDHPHGGG 108
           G+          CW    PVVRGV MNPV+HPHGGG
Sbjct: 184 GNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGG 215

[Close]
BLAST of CmaCh09G010720 vs. TAIR10
Match: AT4G36130.1 (AT4G36130.1 Ribosomal protein L2 family)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 

Query: 23  RGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRA 82
           RG  ARA+G  A +IA   +  ++ +KLPSG  +++   C A +GQV   G  +K + +A
Sbjct: 123 RGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKA 182

Query: 83  GS---------KCWLGKHPVVRGVVMNPVDHPHGGG 108
           G+          CW    P VRGV MNPV+HPHGGG
Sbjct: 183 GNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGG 214

[Close]
BLAST of CmaCh09G010720 vs. NCBI nr
Match: gi|849123922|ref|YP_009154474.1| (ribosomal protein L2 (chloroplast) [Populus tremula])

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 139 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 198

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 199 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 258

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 259 TPWGYPALGRR 269

[Close]
BLAST of CmaCh09G010720 vs. NCBI nr
Match: gi|675155276|ref|YP_009054470.1| (ribosomal protein L2 (chloroplast) [Populus euphratica])

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 139 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 198

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 199 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 258

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 259 TPWGYPALGRR 269

[Close]
BLAST of CmaCh09G010720 vs. NCBI nr
Match: gi|849123898|ref|YP_009154451.1| (ribosomal protein L2 (chloroplast) [Populus tremula])

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-53
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 1 

Query: 2   EQHKSTDQ-IHCRLKNVTAQMHR-GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 61
           E+  STD  +   + N+   + R GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 140 EESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 199

Query: 62  CSATVGQVGNAGVNQKSLGRAGSKCWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 121
           CSATVGQVGNAGVNQKSLGRAGSKCWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 200 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 259

Query: 122 TPWGYPALGRR 131
           TPWGYPALGRR
Sbjct: 260 TPWGYPALGRR 270

[Close]
BLAST of CmaCh09G010720 vs. NCBI nr
Match: gi|346578258|ref|YP_004841849.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK
Sbjct: 151 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 210

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 211 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 257

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BLAST of CmaCh09G010720 vs. NCBI nr
Match: gi|952954360|gb|ALO21724.1| (ribosomal protein L2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 24  GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 83
           GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK
Sbjct: 151 GQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSK 210

Query: 84  CWLGKHPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 131
           CWLGK PVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR
Sbjct: 211 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRR 257

The following BLAST results are available for this feature:
BLAST of CmaCh09G010720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2_POPTR8.7e-5599.0750S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV... [more]
RK2_CUCSA8.7e-5599.0750S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1[more]
RK2B_POPAL8.7e-5599.0750S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1[more]
RK2A_POPAL1.1e-5487.4050S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1[more]
RK2_CARPA2.5e-5498.1350S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1[more]
BLAST of CmaCh09G010720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0N9Q057_POPCN5.7e-5385.5050S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1[more]
A0A0N9Q032_POPCN5.7e-5385.5050S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1[more]
A0A076MPN3_POPEU5.7e-5385.5050S ribosomal protein L2, chloroplastic OS=Populus euphratica GN=rpl2 PE=3 SV=1[more]
A0A0D4WNR1_POPTN5.7e-5385.5050S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1[more]
A0A0D4WQL2_POPTN5.7e-5385.5050S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1[more]
BLAST of CmaCh09G010720 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.14.2e-5597.20ATCG00830.1 ribosomal protein L2[more]
ATCG01310.14.2e-5597.20ATCG01310.1 ribosomal protein L2[more]
AT2G44065.12.2e-1944.83 Ribosomal protein L2 family[more]
AT3G51190.16.1e-1446.88 Ribosomal protein L2 family[more]
AT4G36130.12.0e-1241.67 Ribosomal protein L2 family[more]
BLAST of CmaCh09G010720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|849123922|ref|YP_009154474.1|8.2e-5385.50ribosomal protein L2 (chloroplast) [Populus tremula][more]
gi|675155276|ref|YP_009054470.1|8.2e-5385.50ribosomal protein L2 (chloroplast) [Populus euphratica][more]
gi|849123898|ref|YP_009154451.1|8.2e-5385.50ribosomal protein L2 (chloroplast) [Populus tremula][more]
gi|346578258|ref|YP_004841849.1|1.4e-5299.07ribosomal protein L2 [Cucumis melo subsp. melo][more]
gi|952954360|gb|ALO21724.1|1.4e-5299.07ribosomal protein L2 (plastid) [Cucurbita argyrosperma][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR014726Ribosomal_L2_dom3
IPR022669Ribosomal_L2_C
IPR022671Ribosomal_L2_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G010720.1CmaCh09G010720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 24..130
score: 1.3
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 21..129
score: 6.02
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 21..67
score: 5.1
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 68..129
score: 8.9
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 20..123
score: 1.7
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 16..125
score: 3.3
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 90..101
scor
NoneNo IPR availablePANTHERPTHR13691:SF1950S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 24..130
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G010720Cucumber (Chinese Long) v3cmacucB0046
CmaCh09G010720Wax gourdcmawgoB0018
CmaCh09G010720Wax gourdcmawgoB0022
CmaCh09G010720Cucurbita maxima (Rimu)cmacmaB040
CmaCh09G010720Cucurbita maxima (Rimu)cmacmaB052
CmaCh09G010720Cucurbita moschata (Rifu)cmacmoB048
CmaCh09G010720Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G010720Wild cucumber (PI 183967)cmacpiB037
CmaCh09G010720Wild cucumber (PI 183967)cmacpiB038
CmaCh09G010720Cucumber (Chinese Long) v2cmacuB037
CmaCh09G010720Cucumber (Chinese Long) v2cmacuB038
CmaCh09G010720Melon (DHL92) v3.5.1cmameB027
CmaCh09G010720Melon (DHL92) v3.5.1cmameB031
CmaCh09G010720Watermelon (Charleston Gray)cmawcgB034
CmaCh09G010720Watermelon (97103) v1cmawmB019
CmaCh09G010720Cucurbita pepo (Zucchini)cmacpeB039
CmaCh09G010720Cucurbita pepo (Zucchini)cmacpeB033
CmaCh09G010720Cucurbita pepo (Zucchini)cmacpeB046
CmaCh09G010720Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G010720Bottle gourd (USVL1VR-Ls)cmalsiB036
CmaCh09G010720Cucumber (Gy14) v2cgybcmaB705
CmaCh09G010720Melon (DHL92) v3.6.1cmamedB027
CmaCh09G010720Silver-seed gourdcarcmaB0843
CmaCh09G010720Silver-seed gourdcarcmaB1146