CmaCh09G007900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G007900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor IIIB 90 kDa subunit
LocationCma_Chr09 : 3827722 .. 3830727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGGTTCATGTAACTGGGCCTTCTACTGTTGGGCCATTCTAAGACGATGATTGGGTCCTTTCTTCTCTCTACCGCTTACGGAGTATATAAGTTGTAAATGCATTTTCTTTTAGGCGGCAACGGATCGTCGTCGAGATTCCGAATTTTTGTTCTACTTCCTATCGTGTTCAGTTGCTAATCGGCGGTTCTATCGCGAACCTTTTCTTCTCGGAGCCTCTTTCGTCGGCGGCGAGTGATTTTTTGCTTTCTGCGCGTTTTGGTTCTTTGATCTACATCGTAAGTATTCCATCAACTTATCATGCTGGTGATCTTTAATGTTATGTATGAAAATTGAGGATCGATTGTTCTTGGATTTTTCTGTTCGTTTACCTTCTGCCTCTCTTAATTGGAACATATTTAGGTCATACATCATCGTTTTTATCTTCCAGTTATCTAGGTTAGTTTTAAGGTTAACCAATGATGAACTGAAGTTTTGGTACGTTGGTTTTCTGGTGAAGGCGATTCTTCTGTATTTTTTTCAACCGATTTTTGAATATGCGTTGAAAAGAAGGGTGGAAATACAGTAGACGTAAATGTGAAGTTAGTTCTCACGGTCTTGTTTTGTATTTTGTATTTGTACATTGAAATAACAACTTTATTTTCGAGAAGGAGATTTTGGATATTGATTGTCAGTGTAATTCTCTTATGTTCTTTAAATTTGCTGCTCAAAAAACGTCGAGGGGGCATTAGCATTTTTATTGAATTTTTGAAGACTTTAGTCATTGTTATAATATATTTGACAATTCCAGTTTGTCTTTCTTATTTATTCTTGAGATGACATGTTTCTGGTTGGAACTAATTTTTTGGTTTGAGAAGGCCGACAAGTGTGTCAGTGGATGTCGTAGCTTAAGAACGCTTCTTTTCTTTCTCTCTTTCGTTTCGTTTCTTTTTGAACAACTACGGCTGTCTGGTTTTAGTAGATTGTCATCGTCCATAGTTTTAAAAGATATAACATCCAGTTATTGAAACTGATTGCATTTTGATATTTGTAAATGTTGCTGTCGTTTTCAGATGAAAACTGCTGAGGCATCATTGTTCAGCTTGTTGTGCAAACATAAGGATGAAGATTCTTCATCCGATGATGTGTCCGAGGATCTTGGTGATGTTCTTGACAGTGAGGTATCCTACTACTTAATTGCATTAGCTTCAGGTTTCTTAAATTCTTGCATGTGTTTGTGTGGTGTTTTAACCTGTAGTTTTTCACAAATTATAGGTGAACTCTTACCTAAACACTAAGGAGGAGGCACGTTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGTTAAAGGCTTCTTGTCCCTCTCAGTAACCCTTTGATTGCTTAAATAAAAGTCTTCACTTATATACTTACATTGGAAAAAGGCGTTTTATGCTTCGATCATAGTTTAATTTCCAAATAAATGCTATGCATGGGTTTCAGGAACAAGCAGCTAAGAAAGAAGGCCATGATGTTGTTGGAGCTGCGGCCATTGTCAAAAAATCAAAGAAGGTATTTAGCTATCATTGCATTTTATGTTTGGTAAAAGGTTTCTTATCCAGGAAAACATTGGATAAGAATTTTGAATCTTTTCATTTTATAGTATGATTTATGTTTTCTCATCCTGTTGGAAAGCAGAGGCAAAGGATAACAGAAGCTCCAATAAACAAACCCGCTCAAGCCGAAACAGACACAACATGTGAACTGCTAACTAAGAAGGTATATCAGCAGCATAAACTAACGAATAGAATCATCGGGTGGGCATGTGTCTCGTTGAATCCGTTCTAGTCTCAATTTTCAATTGTTACGTTTCTTAACTTCGCATTCCTCCGGCATATTACTTTCCAATTCTATAGGACTAACTTTGCAATGCTTCAAGCCCACCGCAAGCAGATATTGTTCTTTTTAGGGTTTCCCTCAAGGTTTTTAAAACGCGTCTGTTAGAAAGAGTTTTCCACGTTCGTATAAAGAATGCTTTTTTCTCCTCTTCAACCGACGTGGGATCTCACAAACTTCCACTCATTGCACATAAATAGGACGTGGTTTTATAAAAAAAAATAAAAAATTCTTTGATATTCTTTTTCACAAATCATTTACTTACGAAAGTCTCTCCTGTTATCCACATGATTGTTTTGGCGTGGGGAAGGGTATCTATATCCATAATGCCATGGTTTTCAGGCATGCTAAGCTAGTTTGTTTGTTTACGTTACACCTATTCATCCATTAGCTTATTTCCACAATTATTCTCTGCAGAGGCTCAGTTCAAAATTCAACTTTGACGTGTTGGACAAACTCTTCACCGACACGGTATGTTATCTATCAATTTCTTCCATATTGTTTCGGTATTTACATAACAACTGTAATTGTATCAGCAGATGAGGTCACCAAAGCTTAACCTTCCTGATTATTTCAATTAGTACTCAACGACACATGGTTCTTATAACTGCCAAACAATTTGTGTGCAGCCTGCCCCTGACTCGAGCAAAAAGCAGGAAGCCTCGAGTTTCGAAGAGAATAGTTTATCTGCACAAAACCACTCTACGAACCAGCTTGAAGAAGACCTCGAAGGCAATAATCATGTCGATACGATTTCTGAAGAGAACGCCATTGACTTTGAAGATGAAGATCCCACGGAAGCTTATGGTAACGAGTATTATGATTACGAAAACGAAGAAGAGTATGGTTATGGATACGGTAACTATGGTGGTGAAGAGGAAGATTAGTTGATCAGTTCTTATACAGAAGCTTCTTCTTCATTGGGCAAACTTCATGAGAGAAGAAAGAAATGGTAACTACAAACATGGCATGAAAAGGCAACATTTTTGGTCCAAATCTAACAATTATTGCCGTAGTATTTGTTCGTTTCAAAGATAGGGCAGGTTATTTGTTCTTTTTCCCCAATAGCTTTATATTGTATTTATTACCTTTTTATGGCCCATTATTTATTTATAACTCTTTTTTGTCTTGTTAAG

mRNA sequence

ATGGGCCGGCGGCAACGGATCGTCGTCGAGATTCCGAATTTTTGTTCTACTTCCTATCGTGTTCAGTTGCTAATCGGCGGTTCTATCGCGAACCTTTTCTTCTCGGAGCCTCTTTCGTCGGCGGCGAGTGATTTTTTGCTTTCTGCGCGTTTTGGTTCTTTGATCTACATCATGAAAACTGCTGAGGCATCATTGTTCAGCTTGTTGTGCAAACATAAGGATGAAGATTCTTCATCCGATGATGTGTCCGAGGATCTTGGTGATGTTCTTGACAGTGAGGTGAACTCTTACCTAAACACTAAGGAGGAGGCACGTTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGAACAAGCAGCTAAGAAAGAAGGCCATGATGTTGTTGGAGCTGCGGCCATTGTCAAAAAATCAAAGAAGAGGCAAAGGATAACAGAAGCTCCAATAAACAAACCCGCTCAAGCCGAAACAGACACAACATGTGAACTGCTAACTAAGAAGAGGCTCAGTTCAAAATTCAACTTTGACGTGTTGGACAAACTCTTCACCGACACGCCTGCCCCTGACTCGAGCAAAAAGCAGGAAGCCTCGAGTTTCGAAGAGAATAGTTTATCTGCACAAAACCACTCTACGAACCAGCTTGAAGAAGACCTCGAAGGCAATAATCATGTCGATACGATTTCTGAAGAGAACGCCATTGACTTTGAAGATGAAGATCCCACGGAAGCTTATGGTAACGAGTATTATGATTACGAAAACGAAGAAGAGTATGGTTATGGATACGGTAACTATGGTGGTGAAGAGGAAGATTAGTTGATCAGTTCTTATACAGAAGCTTCTTCTTCATTGGGCAAACTTCATGAGAGAAGAAAGAAATGGTAACTACAAACATGGCATGAAAAGGCAACATTTTTGGTCCAAATCTAACAATTATTGCCGTAGTATTTGTTCGTTTCAAAGATAGGGCAGGTTATTTGTTCTTTTTCCCCAATAGCTTTATATTGTATTTATTACCTTTTTATGGCCCATTATTTATTTATAACTCTTTTTTGTCTTGTTAAG

Coding sequence (CDS)

ATGGGCCGGCGGCAACGGATCGTCGTCGAGATTCCGAATTTTTGTTCTACTTCCTATCGTGTTCAGTTGCTAATCGGCGGTTCTATCGCGAACCTTTTCTTCTCGGAGCCTCTTTCGTCGGCGGCGAGTGATTTTTTGCTTTCTGCGCGTTTTGGTTCTTTGATCTACATCATGAAAACTGCTGAGGCATCATTGTTCAGCTTGTTGTGCAAACATAAGGATGAAGATTCTTCATCCGATGATGTGTCCGAGGATCTTGGTGATGTTCTTGACAGTGAGGTGAACTCTTACCTAAACACTAAGGAGGAGGCACGTTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGAACAAGCAGCTAAGAAAGAAGGCCATGATGTTGTTGGAGCTGCGGCCATTGTCAAAAAATCAAAGAAGAGGCAAAGGATAACAGAAGCTCCAATAAACAAACCCGCTCAAGCCGAAACAGACACAACATGTGAACTGCTAACTAAGAAGAGGCTCAGTTCAAAATTCAACTTTGACGTGTTGGACAAACTCTTCACCGACACGCCTGCCCCTGACTCGAGCAAAAAGCAGGAAGCCTCGAGTTTCGAAGAGAATAGTTTATCTGCACAAAACCACTCTACGAACCAGCTTGAAGAAGACCTCGAAGGCAATAATCATGTCGATACGATTTCTGAAGAGAACGCCATTGACTTTGAAGATGAAGATCCCACGGAAGCTTATGGTAACGAGTATTATGATTACGAAAACGAAGAAGAGTATGGTTATGGATACGGTAACTATGGTGGTGAAGAGGAAGATTAG

Protein sequence

MGRRQRIVVEIPNFCSTSYRVQLLIGGSIANLFFSEPLSSAASDFLLSARFGSLIYIMKTAEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSSKFNFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEED
Homology
[Close]
BLAST of CmaCh09G007900 vs. TrEMBL
Match: A0A0A0L0J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G363410 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.9e-74
Identity = 178/292 (60.96%), Postives = 208/292 (71.23%), Query Frame = 1 

Query: 1   MGRRQRIVVEIPNFCSTSYRVQLLIGGSIANLFFSEPLSSAASDFLLSARFGSLIYIMKT 60
           + RRQRIV +IP+       V+ L GG+ A   FS   S     +L      SLI IMKT
Sbjct: 15  IARRQRIVGKIPDC------VKSLTGGTSA--CFS---SRRRVIWLRYTHSDSLINIMKT 74

Query: 61  AEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQ 120
           A+ASLF +  KHKD+ S SDD SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKDYLQ
Sbjct: 75  ADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQ 134

Query: 121 EQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSSKFNFDV 180
           +QAAKK+G +VVGA+A+VKKSKKRQR TEAPIN PAQA+T TT E+  KKRLSSKFNFDV
Sbjct: 135 DQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFNFDV 194

Query: 181 LDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGN---------------- 240
           LDKLF+DTPAPDSS+KQ ASS +ENS S Q H  N+LE+D E N                
Sbjct: 195 LDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELED 254

Query: 241 ----NHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
               NH +T+ EEN     +EDPTE YGNEYYD+++EEEYGYGY +YGGEEE
Sbjct: 255 NFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEE 295

[Close]
BLAST of CmaCh09G007900 vs. TrEMBL
Match: A0A067KU11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02657 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.2e-21
Identity = 82/226 (36.28%), Postives = 124/226 (54.87%), Query Frame = 1 

Query: 72  HKDEDSSSD--DVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAK---- 131
           H+D+D+SS   D S++  D+ D+EV+ YL+ +EEA+YKKIIWE++N++YL+EQAAK    
Sbjct: 396 HEDDDTSSKALDESDNFSDIDDAEVDGYLHNEEEAQYKKIIWEEMNREYLEEQAAKEAVA 455

Query: 132 ---KEGHD-------------------VVGAAAIVKKSKKRQRITEAPINKPAQAETDTT 191
              KE  +                   V  A A  KK K+++R  EA  + PAQ+ ++  
Sbjct: 456 AAAKEAWEANFKNCPEDMQAAKELEAAVAAALAKSKKEKQQKRAAEAKNSGPAQSASEAA 515

Query: 192 CELLTKKRLSSKFNFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEG 251
            ++LTKKRLSSK N+DVL+KLF +T + D  K +            ++HS N+ +     
Sbjct: 516 LQMLTKKRLSSKINYDVLEKLFDETGSKDPKKPR-----------TESHSDNEDKVPDHL 575

Query: 252 NNHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGG 270
            N  D +  EN  + E++     Y N+ YD   ++EY Y  G  GG
Sbjct: 576 GNENDDLGPENENEEEEDAEAYDYNNDPYDENADQEYAYDDGGGGG 610

[Close]
BLAST of CmaCh09G007900 vs. TrEMBL
Match: A0A059DHT0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02144 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 81/220 (36.82%), Postives = 117/220 (53.18%), Query Frame = 1 

Query: 74  DEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAK-------K 133
           D  + +DD S+ L D+ D EV+ YL+ +EE  YKKIIWE++N++YL+EQAAK       K
Sbjct: 402 DRSAKADDESDTLSDIDDIEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 461

Query: 134 EGHDV----------------VGAAAIVK--KSKKRQRITEAPINKPAQAETDTTCELLT 193
           E +                    AAA+ K  K K+++R  EA  + PAQ   +   ++L 
Sbjct: 462 EAYAANYKNTEDFQAAQELAAAAAAAVAKSRKEKQQKRAAEAKKSTPAQTAAEAARQMLI 521

Query: 194 KKRLSSKFNFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLE-EDLEGNNHV 253
           KKRLSSK N+DVL+KLF +   P++ KK+       N  +  + S+ ++E E +E N+ V
Sbjct: 522 KKRLSSKINYDVLEKLFNEPANPENPKKRRTELESNNDDNTPHVSSKEVEAEVIETNDDV 581

Query: 254 DTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNY 268
               E+   D +  D    YGNE      EE Y Y  GNY
Sbjct: 582 GLDDEQEDDDTKGVDGDLHYGNE------EEMYDYDEGNY 615

[Close]
BLAST of CmaCh09G007900 vs. TrEMBL
Match: D7TL42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01250 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.3e-18
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 1 

Query: 74  DEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAK-------K 133
           DE++++ D SE L D+ D EV+ YL+ ++E ++KKIIWE +NK+YL+EQAAK       K
Sbjct: 409 DENANAGDESESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAK 468

Query: 134 EGHD-----------------VVGAAAIVKKSKKRQ--RITEAPINKPAQAETDTTCELL 193
           E ++                    AAA+ K  K+RQ  R  EA    PAQ   + T ++L
Sbjct: 469 EAYEASFKDNPEGLKAAQELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQML 528

Query: 194 TKKRLSSKFNFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHV 253
           TKKRLSSK N+DVL+KLF D+   ++ KK    S  EN+      S  +LE +       
Sbjct: 529 TKKRLSSKINYDVLEKLFDDSVPSENPKKIRTESQTENNDHKAPISNKKLEPE------E 588

Query: 254 DTISEENAIDFEDEDPTEAYGNEYY--DYENEEEYG 262
           D ++ E+   +E  D    YGN+ Y   Y+ +++YG
Sbjct: 589 DDLAPEDEFGYEG-DTGGLYGNDLYGEGYDYDDDYG 617

[Close]
BLAST of CmaCh09G007900 vs. TrEMBL
Match: W1NDX7_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00004p00092300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 86/237 (36.29%), Postives = 119/237 (50.21%), Query Frame = 1 

Query: 78  SSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAKKEGHDVVGAA-- 137
           +SDD SE L D+ D EVN Y++ +EE R K IIW ++NK+YL+EQAAK+       AA  
Sbjct: 477 ASDDESETLSDIDDLEVNGYIHNEEETRLKTIIWTEMNKEYLEEQAAKEAAAAAARAAYE 536

Query: 138 ---------------------AIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSS 197
                                A +KK K+++R  EA    PAQ   + T ++LTKK++SS
Sbjct: 537 ADIANCHGDALELAKATAAAIAKMKKDKQQKRAEEARNATPAQTAAEATRQMLTKKKISS 596

Query: 198 KFNFDVLDKLF-TDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHVDTISEE 257
           K N++VL+KLF  +TPA D  K Q+  + E  S      S  Q  +   G++      +E
Sbjct: 597 KINYEVLNKLFDEETPAKDEGKTQDGDAEEVPS------SKRQRTKSSHGDSRAQKTKDE 656

Query: 258 NAIDF------EDEDPTEAYGNEYYDYENEEEY-----GYGYGN------YGGEEED 274
           N   F      +D    E +  E Y YEN + Y     GYGYGN      YG  EE+
Sbjct: 657 NDRGFDTEALNDDNGYEEQHAGEDYGYENAQGYGNAEEGYGYGNAEEGYGYGTAEEN 707

[Close]
BLAST of CmaCh09G007900 vs. TAIR10
Match: AT3G09360.1 (AT3G09360.1 Cyclin/Brf1-like TBP-binding protein)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-15
Identity = 71/226 (31.42%), Postives = 111/226 (49.12%), Query Frame = 1 

Query: 74  DEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQEQAAK----KEGH 133
           +E + + D S++  D+ D EVN Y+N +EE  YK I W ++NKDYL+EQAAK    K   
Sbjct: 387 EEHADTSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAAS 446

Query: 134 DVVGA-------------------AAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKK 193
           + + A                   AA  +K K++++  EA    P     +     L KK
Sbjct: 447 EALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKK 506

Query: 194 RLSSKFNFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHVDTI 253
           RLSS  N+DVL+ LF DT AP+ S K+  +  +      +N       ++++ N H +  
Sbjct: 507 RLSSVINYDVLESLF-DTSAPEKSPKRSKTETDIEKKKEEN-------KEMKSNEHENGE 566

Query: 254 SEENAIDFEDEDPTEAY--------GNEYYDY-ENEEEYGYGYGNY 268
           +E+   + E+E   E+Y        G ++Y+  E EEE G  +G Y
Sbjct: 567 NEDEDEEDEEEGNVESYDMKTDFQNGEKFYEEDEEEEEDGNDFGLY 604

[Close]
BLAST of CmaCh09G007900 vs. NCBI nr
Match: gi|700199401|gb|KGN54559.1| (hypothetical protein Csa_4G363410 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.7e-74
Identity = 178/292 (60.96%), Postives = 208/292 (71.23%), Query Frame = 1 

Query: 1   MGRRQRIVVEIPNFCSTSYRVQLLIGGSIANLFFSEPLSSAASDFLLSARFGSLIYIMKT 60
           + RRQRIV +IP+       V+ L GG+ A   FS   S     +L      SLI IMKT
Sbjct: 15  IARRQRIVGKIPDC------VKSLTGGTSA--CFS---SRRRVIWLRYTHSDSLINIMKT 74

Query: 61  AEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKDYLQ 120
           A+ASLF +  KHKD+ S SDD SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKDYLQ
Sbjct: 75  ADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQ 134

Query: 121 EQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSSKFNFDV 180
           +QAAKK+G +VVGA+A+VKKSKKRQR TEAPIN PAQA+T TT E+  KKRLSSKFNFDV
Sbjct: 135 DQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFNFDV 194

Query: 181 LDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGN---------------- 240
           LDKLF+DTPAPDSS+KQ ASS +ENS S Q H  N+LE+D E N                
Sbjct: 195 LDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELED 254

Query: 241 ----NHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
               NH +T+ EEN     +EDPTE YGNEYYD+++EEEYGYGY +YGGEEE
Sbjct: 255 NFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEE 295

[Close]
BLAST of CmaCh09G007900 vs. NCBI nr
Match: gi|659086888|ref|XP_008444162.1| (PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 4.3e-72
Identity = 155/216 (71.76%), Postives = 184/216 (85.19%), Query Frame = 1 

Query: 58  MKTAEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKD 117
           MK A+ASLFS+  +HKD+ S S+D SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 118 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAET-DTTCELLTKKRLSSKF 177
           YLQ+QAAKK+G ++VGAAA+VKKSKKR+R  EAPINKPAQA+T +TT E+L KKRLSSKF
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 178 NFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHVDTISEENAI 237
           +FDVLDKL  DTPAPDSS+KQ ASS +ENS S Q+H  N+LE+D E +NH +T+ EEN +
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFE-DNHTETVFEEN-L 180

Query: 238 DFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
           D E EDPTE YGNEYYD++NEEEYGYGY +YGGEEE
Sbjct: 181 DIEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEE 214

[Close]
BLAST of CmaCh09G007900 vs. NCBI nr
Match: gi|449449894|ref|XP_004142699.1| (PREDICTED: uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 2.8e-71
Identity = 157/235 (66.81%), Postives = 181/235 (77.02%), Query Frame = 1 

Query: 58  MKTAEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKD 117
           MKTA+ASLF +  KHKD+ S SDD SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKD
Sbjct: 1   MKTADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 118 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSSKFN 177
           YLQ+QAAKK+G +VVGA+A+VKKSKKRQR TEAPIN PAQA+T TT E+  KKRLSSKFN
Sbjct: 61  YLQDQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120

Query: 178 FDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGN------------- 237
           FDVLDKLF+DTPAPDSS+KQ ASS +ENS S Q H  N+LE+D E N             
Sbjct: 121 FDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNE 180

Query: 238 -------NHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
                  NH +T+ EEN     +EDPTE YGNEYYD+++EEEYGYGY +YGGEEE
Sbjct: 181 LEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEE 235

[Close]
BLAST of CmaCh09G007900 vs. NCBI nr
Match: gi|778694372|ref|XP_011653794.1| (PREDICTED: uncharacterized protein LOC101217202 isoform X1 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 6.9e-70
Identity = 157/236 (66.53%), Postives = 181/236 (76.69%), Query Frame = 1 

Query: 58  MKTAEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKD 117
           MKTA+ASLF +  KHKD+ S SDD SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKD
Sbjct: 1   MKTADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 118 YLQEQAAKKEGHDVVGAAAIVKKSKK-RQRITEAPINKPAQAETDTTCELLTKKRLSSKF 177
           YLQ+QAAKK+G +VVGA+A+VKKSKK RQR TEAPIN PAQA+T TT E+  KKRLSSKF
Sbjct: 61  YLQDQAAKKQGLNVVGASAVVKKSKKQRQRKTEAPINMPAQADTGTTREMQIKKRLSSKF 120

Query: 178 NFDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGN------------ 237
           NFDVLDKLF+DTPAPDSS+KQ ASS +ENS S Q H  N+LE+D E N            
Sbjct: 121 NFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRN 180

Query: 238 --------NHVDTISEENAIDFEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
                   NH +T+ EEN     +EDPTE YGNEYYD+++EEEYGYGY +YGGEEE
Sbjct: 181 ELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEE 236

[Close]
BLAST of CmaCh09G007900 vs. NCBI nr
Match: gi|659086890|ref|XP_008444163.1| (PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 7.2e-59
Identity = 136/215 (63.26%), Postives = 161/215 (74.88%), Query Frame = 1 

Query: 58  MKTAEASLFSLLCKHKDEDSSSDDVSEDLGDVLDSEVNSYLNTKEEARYKKIIWEQINKD 117
           MK A+ASLFS+  +HKD+ S S+D SEDLGDV DSEVNSYLN ++EA YKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 118 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTCELLTKKRLSSKFN 177
           YLQ+QAAKK+G ++VGAAA+VKKS                           KKRLSSKF+
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKS---------------------------KKRLSSKFD 120

Query: 178 FDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSTNQLEEDLEGNNHVDTISEENAID 237
           FDVLDKL  DTPAPDSS+KQ ASS +ENS S Q+H  N+LE+D E +NH +T+ EEN +D
Sbjct: 121 FDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFE-DNHTETVFEEN-LD 180

Query: 238 FEDEDPTEAYGNEYYDYENEEEYGYGYGNYGGEEE 273
            E EDPTE YGNEYYD++NEEEYGYGY +YGGEEE
Sbjct: 181 IEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEE 186

The following BLAST results are available for this feature:
BLAST of CmaCh09G007900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G007900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J7_CUCSA1.9e-7460.96Uncharacterized protein OS=Cucumis sativus GN=Csa_4G363410 PE=4 SV=1[more]
A0A067KU11_JATCU9.2e-2136.28Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02657 PE=4 SV=1[more]
A0A059DHT0_EUCGR1.5e-1836.82Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02144 PE=4 SV=1[more]
D7TL42_VITVI7.3e-1837.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01250 PE=4 SV=... [more]
W1NDX7_AMBTC1.6e-1736.29Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00004p00092300 PE=4 SV=... [more]
BLAST of CmaCh09G007900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G09360.13.0e-1531.42 Cyclin/Brf1-like TBP-binding protein[more]
BLAST of CmaCh09G007900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199401|gb|KGN54559.1|2.7e-7460.96hypothetical protein Csa_4G363410 [Cucumis sativus][more]
gi|659086888|ref|XP_008444162.1|4.3e-7271.76PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo][more]
gi|449449894|ref|XP_004142699.1|2.8e-7166.81PREDICTED: uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus][more]
gi|778694372|ref|XP_011653794.1|6.9e-7066.53PREDICTED: uncharacterized protein LOC101217202 isoform X1 [Cucumis sativus][more]
gi|659086890|ref|XP_008444163.1|7.2e-5963.26PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR011665BRF1_TBP-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0000126transcription factor TFIIIB complex
Vocabulary: Biological Process
TermDefinition
GO:0006384transcription initiation from RNA polymerase III promoter
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0070897 DNA-templated transcriptional preinitiation complex assembly
biological_process GO:0006359 regulation of transcription from RNA polymerase III promoter
biological_process GO:0008150 biological_process
cellular_component GO:0000126 transcription factor TFIIIB complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0001026 TFIIIB-type transcription factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G007900.1CmaCh09G007900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 73..186
score: 2.8
IPR011665Brf1, TBP-binding domainPFAMPF07741BRF1coord: 88..186
score: 1.3
NoneNo IPR availableGENE3DG3DSA:1.20.5.650coord: 68..126
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G007900Cucsa.125440Cucumber (Gy14) v1cgycmaB0331
CmaCh09G007900Cla023172Watermelon (97103) v1cmawmB038
CmaCh09G007900Csa4G363410Cucumber (Chinese Long) v2cmacuB022
CmaCh09G007900ClCG11G015790Watermelon (Charleston Gray)cmawcgB016
CmaCh09G007900CSPI04G17780Wild cucumber (PI 183967)cmacpiB022
CmaCh09G007900CmoCh09G007820Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G007900Lsi04G023950Bottle gourd (USVL1VR-Ls)cmalsiB027
CmaCh09G007900Cp4.1LG06g06190Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G007900MELO3C032627.2Melon (DHL92) v3.6.1cmamedB035
CmaCh09G007900CsaV3_4G028190Cucumber (Chinese Long) v3cmacucB0029
CmaCh09G007900Cla97C11G221790Watermelon (97103) v2cmawmbB021
CmaCh09G007900Bhi09G002250Wax gourdcmawgoB0038
CmaCh09G007900CsGy4G016940Cucumber (Gy14) v2cgybcmaB467
CmaCh09G007900Carg17022Silver-seed gourdcarcmaB0224
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G007900Cucumber (Gy14) v2cgybcmaB701
CmaCh09G007900Silver-seed gourdcarcmaB0619
CmaCh09G007900Silver-seed gourdcarcmaB0932
CmaCh09G007900Silver-seed gourdcarcmaB0936
CmaCh09G007900Silver-seed gourdcarcmaB1147
CmaCh09G007900Watermelon (97103) v2cmawmbB045
CmaCh09G007900Cucurbita maxima (Rimu)cmacmaB039
CmaCh09G007900Cucurbita maxima (Rimu)cmacmaB045
CmaCh09G007900Cucurbita maxima (Rimu)cmacmaB058
CmaCh09G007900Cucurbita maxima (Rimu)cmacmaB065
CmaCh09G007900Cucurbita moschata (Rifu)cmacmoB037
CmaCh09G007900Cucurbita moschata (Rifu)cmacmoB041
CmaCh09G007900Cucurbita moschata (Rifu)cmacmoB053
CmaCh09G007900Cucurbita moschata (Rifu)cmacmoB059
CmaCh09G007900Melon (DHL92) v3.5.1cmameB028
CmaCh09G007900Melon (DHL92) v3.5.1cmameB036
CmaCh09G007900Watermelon (Charleston Gray)cmawcgB040
CmaCh09G007900Watermelon (97103) v1cmawmB024
CmaCh09G007900Cucurbita pepo (Zucchini)cmacpeB034
CmaCh09G007900Cucurbita pepo (Zucchini)cmacpeB041
CmaCh09G007900Cucurbita pepo (Zucchini)cmacpeB050
CmaCh09G007900Cucurbita pepo (Zucchini)cmacpeB054
CmaCh09G007900Bottle gourd (USVL1VR-Ls)cmalsiB042