CmaCh09G005470 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G005470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_2
LocationCma_Chr09 : 2474971 .. 2475279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

mRNA sequence

ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

Coding sequence (CDS)

ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

Protein sequence

MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD
Homology
[Close]
BLAST of CmaCh09G005470 vs. TrEMBL
Match: A0A0A0LJH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.0e-38
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 1 

Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MG+KWRNSRSQSIRLGQ+C SSN+QESKRL GWQILW+K KKEK ++FSCSS ELRSSYN
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAY LNF++ENW S+ D+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]
BLAST of CmaCh09G005470 vs. TrEMBL
Match: M1BD88_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016508 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 27  SKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSA 86
           S R   W+++W+K KKEK RI+ CS++ +R SY+P+ Y  NF+Q +  +D D+L RSFSA
Sbjct: 38  SSRTPIWRLIWRKMKKEKKRIYDCSNS-MRFSYDPHYYLQNFDQGSISTDVDELSRSFSA 97

Query: 87  RFADPSIVSRSFRLLD 103
           RFA PS +     LLD
Sbjct: 98  RFAVPSRIFTHDELLD 112

[Close]
BLAST of CmaCh09G005470 vs. TrEMBL
Match: A0A059CSU0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02884 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MGIK-WRNSRSQSIRLGQNCGSSNK------QESKRLLGWQILWQKFKKEKIRIFSCSSA 60
          MGIK WR  R + I LG+N  S+N       Q  K   GWQ  W++FK++K    S ++ 
Sbjct: 1  MGIKNWREPRMEVIHLGRNGNSNNSNKPSHGQHEKIHQGWQRFWRRFKRDKKVSSSINNN 60

Query: 61 ELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADP 92
          +++ SY+P+ Y  NF++    ++ D+L RSFSARFADP
Sbjct: 61 KIKGSYDPDEYSQNFDEGIDCAEPDNLSRSFSARFADP 98

[Close]
BLAST of CmaCh09G005470 vs. TrEMBL
Match: A0A061GJD7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037131 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 7   NSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYNPNAYRL 66
           NS  ++I LG++     K  S+    W+  W+KF++E+ +IFS S    ++SY+P+ Y  
Sbjct: 10  NSGRETITLGRSYSQRGKDASRPK--WRTFWKKFRRERKKIFS-SPVAFQASYDPDEYSQ 69

Query: 67  NFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLL 102
           NF+Q    ++ D+L RSFSARFADPS +S+   L+
Sbjct: 70  NFDQGTGWAEPDNLSRSFSARFADPSRISKKVALM 101

[Close]
BLAST of CmaCh09G005470 vs. TrEMBL
Match: A0A0J8FM23_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043880 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 6   RNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSA-------ELRSS 65
           +  + Q IRLGQ C  +++ + K    W++LW+K KKEK RIFS +++          ++
Sbjct: 33  QQQQQQCIRLGQKCAQNDEYDQKSR--WKMLWKKIKKEKQRIFSSNNSFNNHIHGSTIAA 92

Query: 66  YNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSR 97
           Y+P AY  NF++     + + L RSFSARFADPS +S+
Sbjct: 93  YDPEAYSRNFDEGLECKEPEYLTRSFSARFADPSRISQ 128

[Close]
BLAST of CmaCh09G005470 vs. NCBI nr
Match: gi|700205063|gb|KGN60196.1| (hypothetical protein Csa_3G888550 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 1 

Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MG+KWRNSRSQSIRLGQ+C SSN+QESKRL GWQILW+K KKEK ++FSCSS ELRSSYN
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAY LNF++ENW S+ D+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]
BLAST of CmaCh09G005470 vs. NCBI nr
Match: gi|657972861|ref|XP_008378224.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 1 

Query: 3   IKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSA--ELRSSYN 62
           ++WRNSRSQSIRLG N    +   +K   GWQ  W++FK ++ + F  S+   + ++SY+
Sbjct: 157 LEWRNSRSQSIRLGHNYDMPSNY-NKSHTGWQKFWKRFKIQRKKNFGSSTVTPQAQASYD 216

Query: 63  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFR-LLD 103
           P+ Y  NF+Q     + D+L RSFSARFADPS V    R LLD
Sbjct: 217 PDTYSKNFDQGTGWMEPDNLPRSFSARFADPSRVLHGNRNLLD 258

[Close]
BLAST of CmaCh09G005470 vs. NCBI nr
Match: gi|702301689|ref|XP_010049071.1| (PREDICTED: uncharacterized protein LOC104437749 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MGIK-WRNSRSQSIRLGQNCGSSNK------QESKRLLGWQILWQKFKKEKIRIFSCSSA 60
          MGIK WR  R + I LG+N  S+N       Q  K   GWQ  W++FK++K    S ++ 
Sbjct: 1  MGIKNWREPRMEVIHLGRNGNSNNSNKPSHGQHEKIHQGWQRFWRRFKRDKKVSSSINNN 60

Query: 61 ELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADP 92
          +++ SY+P+ Y  NF++    ++ D+L RSFSARFADP
Sbjct: 61 KIKGSYDPDEYSQNFDEGIDCAEPDNLSRSFSARFADP 98

[Close]
BLAST of CmaCh09G005470 vs. NCBI nr
Match: gi|702301684|ref|XP_010049070.1| (PREDICTED: uncharacterized protein LOC104437749 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1   MGIK-WRNSRSQSIRLGQNCGSSNK------QESKRLLGWQILWQKFKKEKIRIFSCSSA 60
           MGIK WR  R + I LG+N  S+N       Q  K   GWQ  W++FK++K    S ++ 
Sbjct: 13  MGIKNWREPRMEVIHLGRNGNSNNSNKPSHGQHEKIHQGWQRFWRRFKRDKKVSSSINNN 72

Query: 61  ELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADP 92
           +++ SY+P+ Y  NF++    ++ D+L RSFSARFADP
Sbjct: 73  KIKGSYDPDEYSQNFDEGIDCAEPDNLSRSFSARFADP 110

[Close]
BLAST of CmaCh09G005470 vs. NCBI nr
Match: gi|590573102|ref|XP_007012027.1| (Uncharacterized protein TCM_037131 [Theobroma cacao])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 7   NSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYNPNAYRL 66
           NS  ++I LG++     K  S+    W+  W+KF++E+ +IFS S    ++SY+P+ Y  
Sbjct: 10  NSGRETITLGRSYSQRGKDASRPK--WRTFWKKFRRERKKIFS-SPVAFQASYDPDEYSQ 69

Query: 67  NFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLL 102
           NF+Q    ++ D+L RSFSARFADPS +S+   L+
Sbjct: 70  NFDQGTGWAEPDNLSRSFSARFADPSRISKKVALM 101

The following BLAST results are available for this feature:
BLAST of CmaCh09G005470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G005470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJH9_CUCSA9.0e-3879.41Uncharacterized protein OS=Cucumis sativus GN=Csa_3G888550 PE=4 SV=1[more]
M1BD88_SOLTU1.0e-0948.68Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016508 PE=4 SV=1[more]
A0A059CSU0_EUCGR1.4e-0941.84Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02884 PE=4 SV=1[more]
A0A061GJD7_THECC4.0e-0940.00Uncharacterized protein OS=Theobroma cacao GN=TCM_037131 PE=4 SV=1[more]
A0A0J8FM23_BETVU8.8e-0939.80Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043880 PE=4 S... [more]
BLAST of CmaCh09G005470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G005470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205063|gb|KGN60196.1|1.3e-3779.41hypothetical protein Csa_3G888550 [Cucumis sativus][more]
gi|657972861|ref|XP_008378224.1|1.2e-1145.63PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Malus... [more]
gi|702301689|ref|XP_010049071.1|2.0e-0941.84PREDICTED: uncharacterized protein LOC104437749 isoform X2 [Eucalyptus grandis][more]
gi|702301684|ref|XP_010049070.1|2.0e-0941.84PREDICTED: uncharacterized protein LOC104437749 isoform X1 [Eucalyptus grandis][more]
gi|590573102|ref|XP_007012027.1|5.7e-0940.00Uncharacterized protein TCM_037131 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G005470.1CmaCh09G005470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 3..94
score: 1.2
NoneNo IPR availablePANTHERPTHR33168:SF12EXPRESSED PROTEINcoord: 3..94
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G005470Cla022995Watermelon (97103) v1cmawmB036
CmaCh09G005470Csa3G888550Cucumber (Chinese Long) v2cmacuB014
CmaCh09G005470MELO3C003594Melon (DHL92) v3.5.1cmameB034
CmaCh09G005470ClCG11G013950Watermelon (Charleston Gray)cmawcgB014
CmaCh09G005470CSPI03G44910Wild cucumber (PI 183967)cmacpiB014
CmaCh09G005470CmoCh09G005360Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G005470Lsi04G022170Bottle gourd (USVL1VR-Ls)cmalsiB022
CmaCh09G005470Cp4.1LG06g04430Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G005470MELO3C003594.2Melon (DHL92) v3.6.1cmamedB033
CmaCh09G005470CsaV3_3G047340Cucumber (Chinese Long) v3cmacucB0021
CmaCh09G005470Cla97C11G219920Watermelon (97103) v2cmawmbB019
CmaCh09G005470Bhi09G002040Wax gourdcmawgoB0026
CmaCh09G005470Carg02959Silver-seed gourdcarcmaB0889
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G005470Cucumber (Chinese Long) v2cmacuB012
CmaCh09G005470Melon (DHL92) v3.5.1cmameB024
CmaCh09G005470Watermelon (Charleston Gray)cmawcgB038
CmaCh09G005470Watermelon (97103) v1cmawmB023
CmaCh09G005470Cucurbita pepo (Zucchini)cmacpeB031
CmaCh09G005470Cucurbita pepo (Zucchini)cmacpeB053
CmaCh09G005470Bottle gourd (USVL1VR-Ls)cmalsiB040
CmaCh09G005470Cucumber (Gy14) v2cgybcmaB148
CmaCh09G005470Cucumber (Gy14) v2cgybcmaB285
CmaCh09G005470Melon (DHL92) v3.6.1cmamedB025
CmaCh09G005470Silver-seed gourdcarcmaB0072
CmaCh09G005470Silver-seed gourdcarcmaB0767
CmaCh09G005470Silver-seed gourdcarcmaB1348
CmaCh09G005470Cucumber (Chinese Long) v3cmacucB0017
CmaCh09G005470Watermelon (97103) v2cmawmbB044
CmaCh09G005470Cucurbita maxima (Rimu)cmacmaB036
CmaCh09G005470Cucurbita maxima (Rimu)cmacmaB044
CmaCh09G005470Cucurbita maxima (Rimu)cmacmaB068
CmaCh09G005470Cucumber (Gy14) v1cgycmaB0445
CmaCh09G005470Cucumber (Gy14) v1cgycmaB0854
CmaCh09G005470Cucurbita moschata (Rifu)cmacmoB035
CmaCh09G005470Cucurbita moschata (Rifu)cmacmoB040
CmaCh09G005470Cucurbita moschata (Rifu)cmacmoB063
CmaCh09G005470Wild cucumber (PI 183967)cmacpiB013