CmaCh09G005150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G005150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description7-dehydrocholesterol reductase, putative
LocationCma_Chr09 : 2298108 .. 2298858 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAGTCGAGCCCGGCTAACTTGATCTACATTCTGTTGTTCTTTCTAGTTTTGTTCAATTTCAACGGTTGAATCTCTTATCATTCACAGCAATCATTCACACCAATTTTAGTCTTCCAATTGTCATTCCTTTGGATCATAGGTTAATTTTTTTTTCTCTTATCAATCAAAATTTGTTTCTTTTTCAAGAAAATTCTTTTTTTAAACAATGTTCATGGATTATTGAACTTTATGTTATAATTAATAAATTGGTTGTGATCGTAAAAATTAACTTGTCAAGTCAATTAGTTGGTTCGATAAATATTATACTTTTTGTTTCTGGTTTTCTTAAATTATGTTAAAAAACAAATTTAAACCTTACAACCATTTTTACTATTACGTTAAAAAAACAAATTTATACCTTACAACCACGTTTACCTTTTATGTAATTTTTTTTCCATTGGGTCAGCATTTCTATCGGGAAGACGTAGAATTCCATCTAATTAAATTGAATTTGGGAACGGTCAGAATTTGCTCTCTCGTCATTATAAACCAAGTTCACATTTTGATTCAATATTTACTTTCAACTCAAAGATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

mRNA sequence

ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

Coding sequence (CDS)

ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

Protein sequence

MARKSHRDRIHEFNQYLVSLSEHHDIPKMFPRQDKHRERGKTRMRKLFVFISTTVFNLYR
Homology
[Close]
BLAST of CmaCh09G005150 vs. TAIR10
Match: AT1G16810.1 (AT1G16810.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-06
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 

Query: 2   ARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           A KSHR+RI +FNQYL ++SEH+DIPK+ P
Sbjct: 114 ANKSHRNRIEDFNQYLANMSEHYDIPKVGP 143

The following BLAST results are available for this feature:
BLAST of CmaCh09G005150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G005150 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh09G005150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16810.12.8e-0666.67 unknown protein[more]
BLAST of CmaCh09G005150 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013865DUF1754_euk
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G005150.1CmaCh09G005150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013865Protein of unknown function DUF1754, eukaryoticPANTHERPTHR13282UNCHARACTERIZEDcoord: 1..33
score: 8.4
NoneNo IPR availablePANTHERPTHR13282:SF6PROTEIN FAM32Acoord: 1..33
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G005150CsaV3_3G046950Cucumber (Chinese Long) v3cmacucB0021
CmaCh09G005150Bhi09G001990Wax gourdcmawgoB0026
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G005150Wild cucumber (PI 183967)cmacpiB013
CmaCh09G005150Wild cucumber (PI 183967)cmacpiB014
CmaCh09G005150Cucumber (Chinese Long) v2cmacuB012
CmaCh09G005150Cucumber (Chinese Long) v2cmacuB014
CmaCh09G005150Melon (DHL92) v3.5.1cmameB024
CmaCh09G005150Melon (DHL92) v3.5.1cmameB034
CmaCh09G005150Watermelon (Charleston Gray)cmawcgB022
CmaCh09G005150Watermelon (Charleston Gray)cmawcgB038
CmaCh09G005150Watermelon (97103) v1cmawmB023
CmaCh09G005150Watermelon (97103) v1cmawmB027
CmaCh09G005150Cucurbita pepo (Zucchini)cmacpeB052
CmaCh09G005150Cucurbita pepo (Zucchini)cmacpeB053
CmaCh09G005150Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G005150Bottle gourd (USVL1VR-Ls)cmalsiB022
CmaCh09G005150Cucumber (Gy14) v2cgybcmaB148
CmaCh09G005150Cucumber (Gy14) v2cgybcmaB285
CmaCh09G005150Melon (DHL92) v3.6.1cmamedB025
CmaCh09G005150Melon (DHL92) v3.6.1cmamedB033
CmaCh09G005150Silver-seed gourdcarcmaB0072
CmaCh09G005150Silver-seed gourdcarcmaB0767
CmaCh09G005150Silver-seed gourdcarcmaB0768
CmaCh09G005150Silver-seed gourdcarcmaB0889
CmaCh09G005150Cucumber (Chinese Long) v3cmacucB0017
CmaCh09G005150Watermelon (97103) v2cmawmbB027
CmaCh09G005150Watermelon (97103) v2cmawmbB044
CmaCh09G005150Wax gourdcmawgoB0015
CmaCh09G005150Cucurbita maxima (Rimu)cmacmaB036
CmaCh09G005150Cucurbita maxima (Rimu)cmacmaB044
CmaCh09G005150Cucurbita maxima (Rimu)cmacmaB059
CmaCh09G005150Cucurbita maxima (Rimu)cmacmaB068
CmaCh09G005150Cucumber (Gy14) v1cgycmaB0445
CmaCh09G005150Cucumber (Gy14) v1cgycmaB0854
CmaCh09G005150Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G005150Cucurbita moschata (Rifu)cmacmoB035
CmaCh09G005150Cucurbita moschata (Rifu)cmacmoB040
CmaCh09G005150Cucurbita moschata (Rifu)cmacmoB055
CmaCh09G005150Cucurbita moschata (Rifu)cmacmoB063