CmaCh09G005050 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G005050
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal RNA small subunit methyltransferase H
Location	Cma_Chr09 : 2275341 .. 2276413 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAGTCTTCCGGTGCTGTTCCATTTCTACCGCTACTGATTTCGAGTAAGGCAAGGAAGGAGAAGCAAAAGAAATCCAAGAATCTTAAGGCGAATACCTGTGTTTCGAAATCATCGGAGTCTTCTTCTTTATCTTCGAAGTTAGCTTTGGTGAAGGAGAAAACGACTCGCTTCACCAAGGAGTTTGATGAGACCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCTGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTAAGCTCCTTTGTAGATTGCACCGTCGGTGCAGGTGAACACTTCTTAGCTGTTAGTCTCTGTCTTAACATGTTTGCCTTCTTGTCCTGTTCGTCGTTAATGATTGATTCGGTGCATTTTTGGTTAACAATTATTATTCGAATGTGTTTTATGATTGTATTTCTCTCGTCAAATTTTCTGAAATATATTATTATTCGTGTATATCTGCAGCCGGATTAGATGCTCATCCAAATTCCTATCAAAATTTACAATCAATGAGCAGTTTAATGTGCGCTGATTTGTATATTGAATTCAGTATTGTGTTTTATGTGGAGCTACATTTGGCCATAGTAGTGATCGATCTTATCTACGTGCTTTTTTCTTTACTATTGTTTCGCCTGCGAAATTTTGGATTAACTTGCAGTCTGTCATCCTGTGTCGTTCCTTTGATGTTGATGCACGAGAATTTGGAATAAGTGCGGCTTTTGACACAACGTACTTTGATAACTGCTCTTTTCCGTGGCTGTATTCGCTCTCTTAGCATTTTCTGTCCGAGTTGATTTTTCTTTTTCATGATGTTCAATTCTGATTTCGTGTCCTGGAAAACAGATAATTCAAGCACATCCAGAGTTGAAATTTTACTTGCAAATGGAAGTCATCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGA

mRNA sequence

ATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAGTCTTCCGGTGCTGTTCCATTTCTACCGCTACTGATTTCGAGTAAGGCAAGGAAGGAGAAGCAAAAGAAATCCAAGAATCTTAAGGCGAATACCTGTGTTTCGAAATCATCGGAGTCTTCTTCTTTATCTTCGAAGTTAGCTTTGGTGAAGGAGAAAACGACTCGCTTCACCAAGGAGTTTGATGAGACCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCTGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTAAGCTCCTTTGTAGATTGCACCGTCGGTGCAGCCGGATTAGATGCTCATCCAAATTCCTATCAAAATTTACAATCAATGAGCAGTTTAATGTGCGCTGATTTGTATATTGAATTCAGTATTGTGTTTTATGTGGAGCTACATTTGGCCATAGTAGTGATCGATCTTATCTACATAATTCAAGCACATCCAGAGTTGAAATTTTACTTGCAAATGGAAGTCATCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGA

Coding sequence (CDS)

ATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAGTCTTCCGGTGCTGTTCCATTTCTACCGCTACTGATTTCGAGTAAGGCAAGGAAGGAGAAGCAAAAGAAATCCAAGAATCTTAAGGCGAATACCTGTGTTTCGAAATCATCGGAGTCTTCTTCTTTATCTTCGAAGTTAGCTTTGGTGAAGGAGAAAACGACTCGCTTCACCAAGGAGTTTGATGAGACCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCTGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTAAGCTCCTTTGTAGATTGCACCGTCGGTGCAGCCGGATTAGATGCTCATCCAAATTCCTATCAAAATTTACAATCAATGAGCAGTTTAATGTGCGCTGATTTGTATATTGAATTCAGTATTGTGTTTTATGTGGAGCTACATTTGGCCATAGTAGTGATCGATCTTATCTACATAATTCAAGCACATCCAGAGTTGAAATTTTACTTGCAAATGGAAGTCATCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGA

Protein sequence

MAFRSSMAKLSFIWSSSLLLHCRESSGAVPFLPLLISSKARKEKQKKSKNLKANTCVSKSSESSSLSSKLALVKEKTTRFTKEFDETAVQFGDTAAHILVTLSEVLDVFSASSGRPLSSFVDCTVGAAGLDAHPNSYQNLQSMSSLMCADLYIEFSIVFYVELHLAIVVIDLIYIIQAHPELKFYLQMEVIQLHFIRPKIGLVLSSARILI

Homology

[Close]

BLAST of CmaCh09G005050 vs. TrEMBL
Match: A0A0A0LDT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881630 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.2e-29
Identity = 94/153 (61.44%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 1   MAFRSSMAKLS-FIWSSSLLLHCRESSGAVPFLPLLI------------SSKARKEKQKK 60
           MAFRSS+AK S F  SSS  LH +         P  I             +KA+KEKQKK
Sbjct: 1   MAFRSSIAKFSLFSSSSSQSLHFQHFFFTCTTPPPRIFRFCSISTASGVKNKAKKEKQKK 60

Query: 61  SKNLKANTCVSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQFGDTAAHILVTLSEVL 120
           SKNLKA+T VSKSSES+SLSSKLALVKEK  TR TKEFDE A+  GDTAAHI V L+EVL
Sbjct: 61  SKNLKASTSVSKSSESASLSSKLALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVL 120

Query: 121 DVFSASSGRPLSSFVDCTVGAAG-----LDAHP 135
           DVF++SSGRPL SFVDCTVGA G     + AHP
Sbjct: 121 DVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHP 153

[Close]

BLAST of CmaCh09G005050 vs. TrEMBL
Match: A0A0J8CVJ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035670 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 61/140 (43.57%), Postives = 77/140 (55.00%), Query Frame = 1


Query: 5   SSMAKLSFIWSSSLLLHCRESSGAVPFLPLLISSKARKEKQKKSKNLKANTCVSKSSESS 64
           S+  KL  + SSS  L     S  V F      S+ R+EK+KK     A T  S SS SS
Sbjct: 7   SASLKLFSLKSSSQSLS--SISATVAFSTFRTPSQKRREKEKKRTPSSAITLASTSSSSS 66

Query: 65  SLSSKLAL----VKEKTTRFTKEFDETAVQ-FGDTAAHILVTLSEVLDVFSASSGRPLSS 124
           S +SKL      V ++ TR  KEFDE  ++ +GD  +HI V L E+LDVF +SS R L S
Sbjct: 67  SSNSKLKSAALEVVKRRTRSEKEFDEDYIKKYGDEESHIPVMLGEILDVFPSSSFR-LRS 126

Query: 125 FVDCTVGAAG-----LDAHP 135
           FVDCT+GA G     +  HP
Sbjct: 127 FVDCTLGAGGHSCAIIQGHP 143

[Close]

BLAST of CmaCh09G005050 vs. TrEMBL
Match: A0A0K9RI91_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068790 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 39  KARKEKQKKSKNLKANTCVSK----------SSESSSLSSKLALVKEKTTRFTKEFDETA 98
           K ++EK+++S+N K  +  S           SS+S S SS L  VK +T R  KEFDE  
Sbjct: 42  KKKQEKRRESENKKTTSSSSSPAIVVASGSASSDSKSKSSALKFVKRRT-RSDKEFDEDY 101

Query: 99  VQ-FGDTAAHILVTLSEVLDVF-SASSGRPLSSFVDCTVGAAG-----LDAHP 135
           ++ +GD  +H+ V L EVLDVF S+SS   L SFVDCT+GAAG     + AHP
Sbjct: 102 IKKYGDEESHVPVMLGEVLDVFDSSSSSFQLRSFVDCTLGAAGHSCAIIQAHP 153

[Close]

BLAST of CmaCh09G005050 vs. TrEMBL
Match: W9R9P8_9ROSA (Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis GN=L484_014898 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 57  VSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQ-FGDTAAHILVTLSEVLDVFSASSG 116
           V+ S+     + K +LVKEK  TR  +EF+   VQ FGDT +HI V L E+LDVFS S  
Sbjct: 31  VTTSAAERKQTKKASLVKEKRRTRSDREFELDEVQRFGDTTSHIPVMLGEILDVFSTSKT 90

Query: 117 RPLSSFVDCTVGAAG-----LDAHP 135
             L SFVDCTVGAAG     + AHP
Sbjct: 91  ASLRSFVDCTVGAAGHSSAIIQAHP 115

[Close]

BLAST of CmaCh09G005050 vs. TrEMBL
Match: M5XQ29_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006156mg PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1


Query: 36  ISSKARKEKQKKSKNLKANTCVSKSSESSSLSSKLALVKEKTTRFTKEFD-ETAVQFGDT 95
           +S + R      S +   +T   K  E  +L  ++ + +++ TR  +EF  ET  ++GDT
Sbjct: 19  LSFRLRSLTTASSISSNCSTTSKKKKEKENLKQRVVIKEKRRTRSDREFKLETIKRYGDT 78

Query: 96  AAHILVTLSEVLDVFSASSGRPLSSFVDCTVGAAG-----LDAHP 135
           AAHI V L EVLDVFSAS  + L  FVDCTVGAAG     ++ HP
Sbjct: 79  AAHIPVMLGEVLDVFSAS--KQLRYFVDCTVGAAGHSSAIIEGHP 121

[Close]

BLAST of CmaCh09G005050 vs. NCBI nr
Match: gi|659132696|ref|XP_008466336.1| (PREDICTED: probable methyltransferase-like protein 15 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 92/152 (60.53%), Postives = 101/152 (66.45%), Query Frame = 1


Query: 1   MAFRSSMAKLSFIWSSSLLLHCRESSGAVPFLPLLI------------SSKARKEKQKKS 60
           MAFRSS+AK S   SSS  LH           P  I             +K +KEK KKS
Sbjct: 1   MAFRSSIAKFSLFSSSSQSLHFHHLFFTCTTPPPRIFRFCSISTASGVKNKTKKEKHKKS 60

Query: 61  KNLKANTCVSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQFGDTAAHILVTLSEVLD 120
           KNLKA+T VSKSSES+SLSSKLALVKEK  TR TKEFDE A+  GDTAAHI V L+EVLD
Sbjct: 61  KNLKASTLVSKSSESASLSSKLALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLD 120

Query: 121 VFSASSGRPLSSFVDCTVGAAG-----LDAHP 135
           VFS+SSGRPL SFVDCTVGA G     + AHP
Sbjct: 121 VFSSSSGRPLRSFVDCTVGAGGHSSAIIQAHP 152

[Close]

BLAST of CmaCh09G005050 vs. NCBI nr
Match: gi|449437088|ref|XP_004136324.1| (PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 94/153 (61.44%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 1   MAFRSSMAKLS-FIWSSSLLLHCRESSGAVPFLPLLI------------SSKARKEKQKK 60
           MAFRSS+AK S F  SSS  LH +         P  I             +KA+KEKQKK
Sbjct: 1   MAFRSSIAKFSLFSSSSSQSLHFQHFFFTCTTPPPRIFRFCSISTASGVKNKAKKEKQKK 60

Query: 61  SKNLKANTCVSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQFGDTAAHILVTLSEVL 120
           SKNLKA+T VSKSSES+SLSSKLALVKEK  TR TKEFDE A+  GDTAAHI V L+EVL
Sbjct: 61  SKNLKASTSVSKSSESASLSSKLALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVL 120

Query: 121 DVFSASSGRPLSSFVDCTVGAAG-----LDAHP 135
           DVF++SSGRPL SFVDCTVGA G     + AHP
Sbjct: 121 DVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHP 153

[Close]

BLAST of CmaCh09G005050 vs. NCBI nr
Match: gi|1009136059|ref|XP_015885328.1| (PREDICTED: ribosomal RNA small subunit methyltransferase H [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09
Identity = 49/110 (44.55%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 32  LPLLISSKARKEKQKKSKNLKANTCVSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQ 91
           L  + +S    +K+K  K  K      +  + +   SK A VKEK  TR  +EF+  A+Q
Sbjct: 38  LSTITTSTKFNDKKKIKKTTKRKKKKEEEEKKALSESKAATVKEKRRTRSDREFEMDAIQ 97

Query: 92  -FGDTAAHILVTLSEVLDVFSASSGRPLSSFVDCTVGAAG-----LDAHP 135
            FGD A H+ V L EV+DVFSAS  +PL SFVDCTVGAAG     +  HP
Sbjct: 98  RFGDMATHVPVMLGEVVDVFSASKPKPLRSFVDCTVGAAGHSSAIIQGHP 147

[Close]

BLAST of CmaCh09G005050 vs. NCBI nr
Match: gi|731318150|ref|XP_010669567.1| (PREDICTED: probable methyltransferase-like protein 15 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-09
Identity = 61/140 (43.57%), Postives = 77/140 (55.00%), Query Frame = 1


Query: 5   SSMAKLSFIWSSSLLLHCRESSGAVPFLPLLISSKARKEKQKKSKNLKANTCVSKSSESS 64
           S+  KL  + SSS  L     S  V F      S+ R+EK+KK     A T  S SS SS
Sbjct: 7   SASLKLFSLKSSSQSLS--SISATVAFSTFRTPSQKRREKEKKRTPSSAITLASTSSSSS 66

Query: 65  SLSSKLAL----VKEKTTRFTKEFDETAVQ-FGDTAAHILVTLSEVLDVFSASSGRPLSS 124
           S +SKL      V ++ TR  KEFDE  ++ +GD  +HI V L E+LDVF +SS R L S
Sbjct: 67  SSNSKLKSAALEVVKRRTRSEKEFDEDYIKKYGDEESHIPVMLGEILDVFPSSSFR-LRS 126

Query: 125 FVDCTVGAAG-----LDAHP 135
           FVDCT+GA G     +  HP
Sbjct: 127 FVDCTLGAGGHSCAIIQGHP 143

[Close]

BLAST of CmaCh09G005050 vs. NCBI nr
Match: gi|703095200|ref|XP_010095471.1| (Ribosomal RNA small subunit methyltransferase H [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 57  VSKSSESSSLSSKLALVKEKT-TRFTKEFDETAVQ-FGDTAAHILVTLSEVLDVFSASSG 116
           V+ S+     + K +LVKEK  TR  +EF+   VQ FGDT +HI V L E+LDVFS S  
Sbjct: 31  VTTSAAERKQTKKASLVKEKRRTRSDREFELDEVQRFGDTTSHIPVMLGEILDVFSTSKT 90

Query: 117 RPLSSFVDCTVGAAG-----LDAHP 135
             L SFVDCTVGAAG     + AHP
Sbjct: 91  ASLRSFVDCTVGAAGHSSAIIQAHP 115

The following BLAST results are available for this feature:

BLAST of CmaCh09G005050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G005050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDT0_CUCSA	4.2e-29	61.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881630 PE=3 SV=1	[more]
A0A0J8CVJ2_BETVU	6.3e-09	43.57	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035670 PE=3 S...	[more]
A0A0K9RI91_SPIOL	6.9e-08	45.13	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068790 PE=3 SV=1	[more]
W9R9P8_9ROSA	6.9e-08	51.76	Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis GN=L484_01489...	[more]
M5XQ29_PRUPE	5.9e-07	41.90	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006156mg PE=3 SV=1	[more]

BLAST of CmaCh09G005050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G005050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132696\|ref\|XP_008466336.1\|	4.6e-29	60.53	PREDICTED: probable methyltransferase-like protein 15 [Cucumis melo]	[more]
gi\|449437088\|ref\|XP_004136324.1\|	6.0e-29	61.44	PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus]	[more]
gi\|1009136059\|ref\|XP_015885328.1\|	6.9e-09	44.55	PREDICTED: ribosomal RNA small subunit methyltransferase H [Ziziphus jujuba]	[more]
gi\|731318150\|ref\|XP_010669567.1\|	9.0e-09	43.57	PREDICTED: probable methyltransferase-like protein 15 homolog [Beta vulgaris sub...	[more]
gi\|703095200\|ref\|XP_010095471.1\|	1.0e-07	51.76	Ribosomal RNA small subunit methyltransferase H [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G005050.1	CmaCh09G005050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G005050	Melon (DHL92) v3.6.1	cmamedB025
CmaCh09G005050	Melon (DHL92) v3.6.1	cmamedB033
CmaCh09G005050	Silver-seed gourd	carcmaB0767
CmaCh09G005050	Silver-seed gourd	carcmaB0768
CmaCh09G005050	Silver-seed gourd	carcmaB0889
CmaCh09G005050	Cucumber (Chinese Long) v3	cmacucB0017
CmaCh09G005050	Cucumber (Chinese Long) v3	cmacucB0021
CmaCh09G005050	Watermelon (97103) v2	cmawmbB027
CmaCh09G005050	Watermelon (97103) v2	cmawmbB044
CmaCh09G005050	Wax gourd	cmawgoB0015
CmaCh09G005050	Wax gourd	cmawgoB0026
CmaCh09G005050	Cucurbita maxima (Rimu)	cmacmaB036
CmaCh09G005050	Cucurbita maxima (Rimu)	cmacmaB044
CmaCh09G005050	Cucurbita maxima (Rimu)	cmacmaB059
CmaCh09G005050	Cucumber (Gy14) v1	cgycmaB0445
CmaCh09G005050	Cucumber (Gy14) v1	cgycmaB0854
CmaCh09G005050	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G005050	Cucurbita moschata (Rifu)	cmacmoB035
CmaCh09G005050	Cucurbita moschata (Rifu)	cmacmoB040
CmaCh09G005050	Cucurbita moschata (Rifu)	cmacmoB055
CmaCh09G005050	Wild cucumber (PI 183967)	cmacpiB013
CmaCh09G005050	Wild cucumber (PI 183967)	cmacpiB014
CmaCh09G005050	Cucumber (Chinese Long) v2	cmacuB012
CmaCh09G005050	Cucumber (Chinese Long) v2	cmacuB014
CmaCh09G005050	Melon (DHL92) v3.5.1	cmameB024
CmaCh09G005050	Melon (DHL92) v3.5.1	cmameB034
CmaCh09G005050	Watermelon (Charleston Gray)	cmawcgB022
CmaCh09G005050	Watermelon (Charleston Gray)	cmawcgB038
CmaCh09G005050	Watermelon (97103) v1	cmawmB023
CmaCh09G005050	Watermelon (97103) v1	cmawmB027
CmaCh09G005050	Cucurbita pepo (Zucchini)	cmacpeB052
CmaCh09G005050	Cucurbita pepo (Zucchini)	cmacpeB053
CmaCh09G005050	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G005050	Bottle gourd (USVL1VR-Ls)	cmalsiB022
CmaCh09G005050	Cucumber (Gy14) v2	cgybcmaB148
CmaCh09G005050	Cucumber (Gy14) v2	cgybcmaB285