CmaCh09G004460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G004460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr09 : 1956221 .. 1956685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGTTTAAAACACTTTTTGGTGGATATGTACATAAATACACATCTTTTAACACAATTGTTGATAAGTATGATCTTGTCCACCACAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

mRNA sequence

ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Coding sequence (CDS)

ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Protein sequence

MEEVCLNSQPVFDDCDMYMVIVPLWTKMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFDPREKSDIELNLSFAGMISIHAYERKYYKEAVADLESRNLSVELKRRCSF
Homology
[Close]
BLAST of CmaCh09G004460 vs. TrEMBL
Match: A0A0A0LDN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1 

Query: 18  YMVIVPLWTKMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFD 77
           +MV++PLWT  N  KHSQ RI H QLWV N+IL MR  TF M MLR WALA+E  IHGF 
Sbjct: 36  WMVMIPLWTMTNPGKHSQGRILHFQLWVWNLILSMRLMTFTMFMLRMWALASESVIHGFV 95

Query: 78  PREKSDIELNLSFA 92
            R+K+DIELNL+ A
Sbjct: 96  LRKKNDIELNLAAA 109

[Close]
BLAST of CmaCh09G004460 vs. NCBI nr
Match: gi|700204952|gb|KGN60085.1| (hypothetical protein Csa_3G876570 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-16
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1 

Query: 18  YMVIVPLWTKMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFD 77
           +MV++PLWT  N  KHSQ RI H QLWV N+IL MR  TF M MLR WALA+E  IHGF 
Sbjct: 36  WMVMIPLWTMTNPGKHSQGRILHFQLWVWNLILSMRLMTFTMFMLRMWALASESVIHGFV 95

Query: 78  PREKSDIELNLSFA 92
            R+K+DIELNL+ A
Sbjct: 96  LRKKNDIELNLAAA 109

The following BLAST results are available for this feature:
BLAST of CmaCh09G004460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G004460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDN7_CUCSA3.2e-1663.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876570 PE=4 SV=1[more]
BLAST of CmaCh09G004460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G004460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204952|gb|KGN60085.1|4.5e-1663.51hypothetical protein Csa_3G876570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G004460.1CmaCh09G004460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G004460Csa3G876570Cucumber (Chinese Long) v2cmacuB014
CmaCh09G004460CmoCh09G004540Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G004460Cp4.1LG06g03280Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G004460Carg02872Silver-seed gourdcarcmaB0889
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G004460Cucumber (Chinese Long) v3cmacucB0016
CmaCh09G004460Cucumber (Chinese Long) v3cmacucB0018
CmaCh09G004460Cucumber (Chinese Long) v3cmacucB0021
CmaCh09G004460Watermelon (97103) v2cmawmbB024
CmaCh09G004460Watermelon (97103) v2cmawmbB027
CmaCh09G004460Watermelon (97103) v2cmawmbB033
CmaCh09G004460Watermelon (97103) v2cmawmbB043
CmaCh09G004460Wax gourdcmawgoB0026
CmaCh09G004460Wax gourdcmawgoB0045
CmaCh09G004460Cucurbita maxima (Rimu)cmacmaB031
CmaCh09G004460Cucurbita maxima (Rimu)cmacmaB030
CmaCh09G004460Cucurbita maxima (Rimu)cmacmaB044
CmaCh09G004460Cucurbita maxima (Rimu)cmacmaB055
CmaCh09G004460Cucurbita maxima (Rimu)cmacmaB066
CmaCh09G004460Cucumber (Gy14) v1cgycmaB0444
CmaCh09G004460Cucumber (Gy14) v1cgycmaB0750
CmaCh09G004460Cucumber (Gy14) v1cgycmaB0854
CmaCh09G004460Cucurbita moschata (Rifu)cmacmoB031
CmaCh09G004460Cucurbita moschata (Rifu)cmacmoB035
CmaCh09G004460Cucurbita moschata (Rifu)cmacmoB040
CmaCh09G004460Cucurbita moschata (Rifu)cmacmoB052
CmaCh09G004460Cucurbita moschata (Rifu)cmacmoB061
CmaCh09G004460Wild cucumber (PI 183967)cmacpiB012
CmaCh09G004460Wild cucumber (PI 183967)cmacpiB014
CmaCh09G004460Wild cucumber (PI 183967)cmacpiB020
CmaCh09G004460Cucumber (Chinese Long) v2cmacuB013
CmaCh09G004460Cucumber (Chinese Long) v2cmacuB020
CmaCh09G004460Melon (DHL92) v3.5.1cmameB022
CmaCh09G004460Melon (DHL92) v3.5.1cmameB025
CmaCh09G004460Melon (DHL92) v3.5.1cmameB034
CmaCh09G004460Melon (DHL92) v3.5.1cmameB040
CmaCh09G004460Watermelon (Charleston Gray)cmawcgB022
CmaCh09G004460Watermelon (Charleston Gray)cmawcgB028
CmaCh09G004460Watermelon (Charleston Gray)cmawcgB037
CmaCh09G004460Watermelon (97103) v1cmawmB021
CmaCh09G004460Watermelon (97103) v1cmawmB027
CmaCh09G004460Watermelon (97103) v1cmawmB041
CmaCh09G004460Cucurbita pepo (Zucchini)cmacpeB038
CmaCh09G004460Cucurbita pepo (Zucchini)cmacpeB028
CmaCh09G004460Cucurbita pepo (Zucchini)cmacpeB049
CmaCh09G004460Cucurbita pepo (Zucchini)cmacpeB059
CmaCh09G004460Bottle gourd (USVL1VR-Ls)cmalsiB012
CmaCh09G004460Bottle gourd (USVL1VR-Ls)cmalsiB022
CmaCh09G004460Bottle gourd (USVL1VR-Ls)cmalsiB031
CmaCh09G004460Bottle gourd (USVL1VR-Ls)cmalsiB039
CmaCh09G004460Cucumber (Gy14) v2cgybcmaB149
CmaCh09G004460Cucumber (Gy14) v2cgybcmaB285
CmaCh09G004460Melon (DHL92) v3.6.1cmamedB023
CmaCh09G004460Melon (DHL92) v3.6.1cmamedB026
CmaCh09G004460Melon (DHL92) v3.6.1cmamedB033
CmaCh09G004460Silver-seed gourdcarcmaB0182
CmaCh09G004460Silver-seed gourdcarcmaB0165
CmaCh09G004460Silver-seed gourdcarcmaB0933
CmaCh09G004460Silver-seed gourdcarcmaB0935