CmaCh09G000600 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Dolichol-phosphate mannosyltransferase
Location	Cma_Chr09 : 264954 .. 266178 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCACTAGAACTACCACTCTTGCTCGTCGAATTTTGCCTCCTGAGCGCGCCAGAATCCAGAGGTCGCGAATCGCAGTTGCCGTCGATCAGTTTCCAGTTGATTTCGCGATTCTCGATTATATGAATTCCTGGTTGAACAGTAATCTTTAAGCGTTTACGTAATGGAATGATTAACTTATGAAGCTCATCTGTAATAAAATTGTGATTCATTTAATTAGGATTCAGTTGTTTCGGTGAGAAATAAAGTTTATGAGATCAACCTTGTTCTTTATTATTTGCAGATTCAATTCTCGAGTTTTTGGATCGATTTATTATCTTCTTTGTGCACTCTTTTTTGTTTATTTTTACAATACTGGAAGTTGAAATGGCAATAGATTACATAAGCATCCTTTTCTCGCAGCACAATGTTTTCTTGCCGATGTCGGGGATAATAATTGTTGTTGATGATGGAAGTCCTGATGGTACTCAAGAAGCTGTGAAACAGTTGCAACGAGTGTATGGAGAAGATCGGATCGTAAGTTCACCGAGGACGTTTCTGCATTTGTTGCAGCGCAGATATAATCATCATCTTGTTCTGTTTACTCGTTTAGTTTTTTGATTTCCCGTGCAGCTATTGAGAGTCAGACCTGGGAATGTTGTACGACTTCTTCTTTTGAAAATATCACAGATCTGATGAATGATTCATTTCAGGAACGGGTTACTGTCACGGTCTGAAGCATGCAACTGGTAATTTTGGTGTTATAATGGATGCGAACTTATCTCACCGTGCAAGGTTGTTTTTAGTCTGAAAACAAGATTCTATTATTGGATTTGGGATTTAGTTCCAATCTGCTGCAATGTGATTACCATTTCAGTATGTAAAGGTCTCTCATACCTTCCGGTCACCAGATGATGCACAAATGTAGTGAATTTATTGAGTTGCCAGGTAACTTCTTGTTTTATTTCAACCCTCTGTGAATTTATTGTTAACTTCTTGAACTTTTGAAAAAATAAAAATGATGTTTTAAAATAAAAACAAAACGCAATCACAAAATTGAGACTGAGAGTAATTTAATTTTTATTTTAAGTAATTGTATTTGATCTTGGGTGAGCTAAATATGTTGTTATTATGTTTCACAGAAAAATCCAAATGATTGGCATCAATGAAGAGGAAGCCGAAACCGACGACTCGGAATGGACAGATCTAGACGCTAGTCCCATTCACACCCCATTCCTTTAG

mRNA sequence

ATGAGGCCCACTAGAACTACCACTCTTGCTCGTCGAATTTTGCCTCCTGAGCGCGCCAGAATCCAGAGGTCGCGAATCGCAGTTGCCGTCGATCAGTTTCCAGTTGATTTCGCGATTCTCGATTATATGAATTCCTGGTTGAACATTGAAATGGCAATAGATTACATAAGCATCCTTTTCTCGCAGCACAATGTTTTCTTGCCGATGTCGGGGATAATAATTGTTGTTGATGATGGAAGTCCTGATGGTACTCAAGAAGCTGTGAAACAGTTGCAACGAGTGTATGGAGAAGATCGGATCGTAAGTTCACCGAGGACAAAAATCCAAATGATTGGCATCAATGAAGAGGAAGCCGAAACCGACGACTCGGAATGGACAGATCTAGACGCTAGTCCCATTCACACCCCATTCCTTTAG

Coding sequence (CDS)

ATGAGGCCCACTAGAACTACCACTCTTGCTCGTCGAATTTTGCCTCCTGAGCGCGCCAGAATCCAGAGGTCGCGAATCGCAGTTGCCGTCGATCAGTTTCCAGTTGATTTCGCGATTCTCGATTATATGAATTCCTGGTTGAACATTGAAATGGCAATAGATTACATAAGCATCCTTTTCTCGCAGCACAATGTTTTCTTGCCGATGTCGGGGATAATAATTGTTGTTGATGATGGAAGTCCTGATGGTACTCAAGAAGCTGTGAAACAGTTGCAACGAGTGTATGGAGAAGATCGGATCGTAAGTTCACCGAGGACAAAAATCCAAATGATTGGCATCAATGAAGAGGAAGCCGAAACCGACGACTCGGAATGGACAGATCTAGACGCTAGTCCCATTCACACCCCATTCCTTTAG

Protein sequence

MRPTRTTTLARRILPPERARIQRSRIAVAVDQFPVDFAILDYMNSWLNIEMAIDYISILFSQHNVFLPMSGIIIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTKIQMIGINEEEAETDDSEWTDLDASPIHTPFL

Homology

[Close]

BLAST of CmaCh09G000600 vs. Swiss-Prot
Match: DPM1_SCHPO (Dolichol-phosphate mannosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpm1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRT 107
           I+++DD SPDGTQE  K+LQ++YGED+I+  PR+
Sbjct: 37  IVIIDDASPDGTQEVAKELQKIYGEDKILLKPRS 70

[Close]

BLAST of CmaCh09G000600 vs. Swiss-Prot
Match: DPM1_CRIGR (Dolichol-phosphate mannosyltransferase subunit 1 OS=Cricetulus griseus GN=DPM1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-06
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           II++DDGSPDGT+E  +QL+++YG DRI+  PR K
Sbjct: 66  IIIIDDGSPDGTREVAEQLEKIYGPDRILLRPREK 100

[Close]

BLAST of CmaCh09G000600 vs. Swiss-Prot
Match: DPM1_DROME (Probable dolichol-phosphate mannosyltransferase OS=Drosophila melanogaster GN=CG10166 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-06
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1


Query: 66  FLPMSGI---IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPR 106
           ++  SG+   +IV+DDGSPDGT +  K LQ++YGED+IV  PR
Sbjct: 31  YMKASGLEYEVIVIDDGSPDGTLDVAKDLQKIYGEDKIVLRPR 73

[Close]

BLAST of CmaCh09G000600 vs. TrEMBL
Match: V4V8U0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003501mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTKIQMIGIN 115
           IIVVDDGSPDGTQE VKQLQ++YGEDRI+  PR K   +G+N
Sbjct: 44  IIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGMN 85

[Close]

BLAST of CmaCh09G000600 vs. TrEMBL
Match: B9H5H4_POPTR (Dolichyl-phosphate beta-D-mannosyltransferase family protein OS=Populus trichocarpa GN=POPTR_0005s27230g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-07
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 38  IIVVDDGSPDGTQEVVKQLQKVYGEDRILLRPRAK 72

[Close]

BLAST of CmaCh09G000600 vs. TrEMBL
Match: A0A067KL12_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08088 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 37  IIVVDDGSPDGTQEVVKQLQQVYGEDRILLRPRPK 71

[Close]

BLAST of CmaCh09G000600 vs. TrEMBL
Match: A0A022QSK1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012434mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 50  IIVVDDGSPDGTQEIVKQLQQVYGEDRILLRPRAK 84

[Close]

BLAST of CmaCh09G000600 vs. TrEMBL
Match: A0A0B0ML18_GOSAR (Dolichol-phosphate mannosyltransferase OS=Gossypium arboreum GN=F383_20891 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ++YGEDRI+  PR K
Sbjct: 38  IIVVDDGSPDGTQEVVKQLQKLYGEDRILLRPRPK 72

[Close]

BLAST of CmaCh09G000600 vs. TAIR10
Match: AT1G20575.1 (AT1G20575.1 Nucleotide-diphospho-sugar transferases superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ++YGEDRI+   R K
Sbjct: 46  IIVVDDGSPDGTQEIVKQLQQLYGEDRILLRARAK 80

[Close]

BLAST of CmaCh09G000600 vs. NCBI nr
Match: gi|567885581|ref|XP_006435349.1| (hypothetical protein CICLE_v10003501mg, partial [Citrus clementina])

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTKIQMIGIN 115
           IIVVDDGSPDGTQE VKQLQ++YGEDRI+  PR K   +G+N
Sbjct: 44  IIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGMN 85

[Close]

BLAST of CmaCh09G000600 vs. NCBI nr
Match: gi|743895923|ref|XP_011041240.1| (PREDICTED: dolichol-phosphate mannosyltransferase subunit 1-like [Populus euphratica])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 38  IIVVDDGSPDGTQEVVKQLQKVYGEDRILLRPRAK 72

[Close]

BLAST of CmaCh09G000600 vs. NCBI nr
Match: gi|224086036|ref|XP_002307788.1| (dolichyl-phosphate beta-D-mannosyltransferase family protein [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 38  IIVVDDGSPDGTQEVVKQLQKVYGEDRILLRPRAK 72

[Close]

BLAST of CmaCh09G000600 vs. NCBI nr
Match: gi|802605979|ref|XP_012073661.1| (PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas])

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 37  IIVVDDGSPDGTQEVVKQLQQVYGEDRILLRPRPK 71

[Close]

BLAST of CmaCh09G000600 vs. NCBI nr
Match: gi|848891634|ref|XP_012845923.1| (PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Erythranthe guttata])

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 73  IIVVDDGSPDGTQEAVKQLQRVYGEDRIVSSPRTK 108
           IIVVDDGSPDGTQE VKQLQ+VYGEDRI+  PR K
Sbjct: 50  IIVVDDGSPDGTQEIVKQLQQVYGEDRILLRPRAK 84

The following BLAST results are available for this feature:

BLAST of CmaCh09G000600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPM1_SCHPO	2.7e-06	58.82	Dolichol-phosphate mannosyltransferase OS=Schizosaccharomyces pombe (strain 972 ...	[more]
DPM1_CRIGR	6.1e-06	60.00	Dolichol-phosphate mannosyltransferase subunit 1 OS=Cricetulus griseus GN=DPM1 P...	[more]
DPM1_DROME	8.0e-06	53.49	Probable dolichol-phosphate mannosyltransferase OS=Drosophila melanogaster GN=CG...	[more]

BLAST of CmaCh09G000600 vs. TrEMBL


Match Name	E-value	Identity	Description
V4V8U0_9ROSI	3.8e-07	71.43	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003501mg PE=...	[more]
B9H5H4_POPTR	8.6e-07	82.86	Dolichyl-phosphate beta-D-mannosyltransferase family protein OS=Populus trichoca...	[more]
A0A067KL12_JATCU	1.5e-06	82.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08088 PE=4 SV=1	[more]
A0A022QSK1_ERYGU	1.5e-06	82.86	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012434mg PE=4 SV=1	[more]
A0A0B0ML18_GOSAR	2.5e-06	80.00	Dolichol-phosphate mannosyltransferase OS=Gossypium arboreum GN=F383_20891 PE=4 ...	[more]

BLAST of CmaCh09G000600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20575.1	1.4e-08	77.14	Nucleotide-diphospho-sugar transferases superfamily protein	[more]

BLAST of CmaCh09G000600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567885581\|ref\|XP_006435349.1\|	5.5e-07	71.43	hypothetical protein CICLE_v10003501mg, partial [Citrus clementina]	[more]
gi\|743895923\|ref\|XP_011041240.1\|	1.2e-06	82.86	PREDICTED: dolichol-phosphate mannosyltransferase subunit 1-like [Populus euphra...	[more]
gi\|224086036\|ref\|XP_002307788.1\|	1.2e-06	82.86	dolichyl-phosphate beta-D-mannosyltransferase family protein [Populus trichocarp...	[more]
gi\|802605979\|ref\|XP_012073661.1\|	2.1e-06	82.86	PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]	[more]
gi\|848891634\|ref\|XP_012845923.1\|	2.1e-06	82.86	PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Erythranthe guttata...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0060359	response to ammonium ion
cellular_component	GO:0033185	dolichol-phosphate-mannose synthase complex
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000600.1	CmaCh09G000600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G000600	Bhi09G002401	Wax gourd	cmawgoB0029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000600	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000600	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000600	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000600	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000600	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000600	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000600	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000600	Watermelon (Charleston Gray)	cmawcgB017
CmaCh09G000600	Watermelon (97103) v1	cmawmB039
CmaCh09G000600	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G000600	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G000600	Bottle gourd (USVL1VR-Ls)	cmalsiB024
CmaCh09G000600	Cucumber (Gy14) v2	cgybcmaB469
CmaCh09G000600	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000600	Silver-seed gourd	carcmaB0134
CmaCh09G000600	Silver-seed gourd	carcmaB0501
CmaCh09G000600	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000600	Watermelon (97103) v2	cmawmbB022