CmaCh09G000370 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr09 : 165252 .. 166383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAAAGGTGTAATAAAGGTGATGGAACCATGTTGTAGTATTTCATTCATTTCTGTCCCTTTTCAAAGGTCATTAGCTTTAGAATATTGCCTTCAAATGTTATATACGAATTCAAAACCAGCATTGTACATTCATGCACAAGAACAACATAGACTCAAAACAGCCAGCAAGAGACATGATGCCTAAGCTTCAAAAACTTTGCACTCTTTGTCAGCTGGGTTAGTCTGGCAGTAATCCTCCAATGGGTCTCCGCTCTTTCCTGATCCCGCTCCCGGCCATTCGCTTGCCACCAAATGAGCCAAGTCGACAACTCTTTGGCTGGAGGCAACAAAAAAACAAATGAAACTTAATATACTTTGGCTTCTACTATTGAGGGAACATGAATTCCCATGAATTAAAGTCCTCACCTGTATCCCCATTCGTTGTCGTACCAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGGTGCGATGCATCTAAGAGTCTCTAAAAATAATCCCAAGAACATGACAAGAGGTCATAAGATTTTCTCTTTTTCAAGAATCATTTATCAGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

mRNA sequence

ATGAGGAAGAAAGGTGTAATAAAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

Coding sequence (CDS)

ATGAGGAAGAAAGGTGTAATAAAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

Protein sequence

MRKKGVIKATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKSRSMSWCIHNVMFMSFPYLVSSVGVSGCHGSLHNAWIQSYIKWLKSGTSASRPKRNQLLTKFLVDNLHKRSKAIGGARSIAA

Homology

[Close]

BLAST of CmaCh09G000370 vs. TrEMBL
Match: A5BUM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031969 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           ++TTL++SSPIT+V +ES VE+TS HLKSTDT G SH    P +  SA FLKAA TSSA+
Sbjct: 358 RSTTLTMSSPITMVRDESTVEDTSEHLKSTDTSGSSHIDGIPLSSFSALFLKAAFTSSAK 417

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 127
           +      TTRSTTET  VGTR A+PLS PL  G TR TAFAAPV VGTM + AA  RL++
Sbjct: 418 VSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAFAAPVEVGTMLRTAARTRLRT 477

Query: 128 R 129
           R
Sbjct: 478 R 478

[Close]

BLAST of CmaCh09G000370 vs. TrEMBL
Match: A0A0A9LVV8_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.7e-22
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 49  PFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFA 108
           P +GPSAAF  A  TSSA MP FS+  TRSTTETFGVGTRSA+PLSLP SWG+TR TA A
Sbjct: 2   PLSGPSAAFRNAPFTSSAVMPVFSVLITRSTTETFGVGTRSAMPLSLPFSWGSTRATALA 61

Query: 109 APVLVGTMFKAAALARLKSR 129
           APVLVGTMF AAA A L+SR
Sbjct: 62  APVLVGTMFSAAARALLRSR 81

[Close]

BLAST of CmaCh09G000370 vs. TrEMBL
Match: A0A0E9XPE2_ANGAN (Uncharacterized protein OS=Anguilla anguilla PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 54/101 (53.47%), Postives = 59/101 (58.42%), Query Frame = 1


Query: 27  VEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVG 86
           +EE    LKS DT   S   + PF GPSAA L   L SS  +  FS  T RSTT+T GVG
Sbjct: 1   MEEWVSPLKSVDTTWCSVYPRMPFMGPSAASLITFLMSSY-LAGFSRRTVRSTTDTLGVG 60

Query: 87  TRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 128
           TR AIP+SLPLS G T  TA AAPV  G MF  A    L S
Sbjct: 61  TRKAIPVSLPLSSGMTFPTALAAPVEAGMMFWLAPRPSLHS 100

[Close]

BLAST of CmaCh09G000370 vs. TrEMBL
Match: A0A0U0VQQ5_STAHA (Uncharacterised protein OS=Staphylococcus haemolyticus GN=ERS123952_02043 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 56  AFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGT 115
           AF KA  TSSA +  FS  TT+ST++TF VGTR+A+P +LP + GNT   AFAAPV VG 
Sbjct: 7   AFSKAWFTSSA-VTSFSKSTTKSTSDTFFVGTRNAMPCNLPSNSGNTSFKAFAAPVEVGI 66

Query: 116 MFKAAALARLKSRSMSWCIHNVMFMSF 143
           M      ARLK    S C  ++ F SF
Sbjct: 67  MLSLHERARLK----SLCGLSIFFWSF 88

[Close]

BLAST of CmaCh09G000370 vs. TrEMBL
Match: A0A146VXP5_FUNHE (Zinc finger protein castor OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 43/76 (56.58%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 52  GPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPV 111
           GPSAA     L SS  +  FS  T RSTTET GVGTR A+P+SLPLS G T  TA AAPV
Sbjct: 2   GPSAAAFTTFLMSSY-LAGFSRRTVRSTTETLGVGTRKAMPVSLPLSSGMTLPTALAAPV 61

Query: 112 LVGTMFKAAALARLKS 128
             G MF  A    L S
Sbjct: 62  EAGMMFWLAPRPSLHS 76

[Close]

BLAST of CmaCh09G000370 vs. NCBI nr
Match: gi|147862555|emb|CAN81495.1| (hypothetical protein VITISV_031969 [Vitis vinifera])

HSP 1 Score: 125.9 bits (315), Expect = 8.0e-26
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           ++TTL++SSPIT+V +ES VE+TS HLKSTDT G SH    P +  SA FLKAA TSSA+
Sbjct: 358 RSTTLTMSSPITMVRDESTVEDTSEHLKSTDTSGSSHIDGIPLSSFSALFLKAAFTSSAK 417

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 127
           +      TTRSTTET  VGTR A+PLS PL  G TR TAFAAPV VGTM + AA  RL++
Sbjct: 418 VSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAFAAPVEVGTMLRTAARTRLRT 477

Query: 128 R 129
           R
Sbjct: 478 R 478

[Close]

BLAST of CmaCh09G000370 vs. NCBI nr
Match: gi|897310964|emb|CPM89998.1| (Uncharacterised protein [Staphylococcus haemolyticus])

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 56  AFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGT 115
           AF KA  TSSA +  FS  TT+ST++TF VGTR+A+P +LP + GNT   AFAAPV VG 
Sbjct: 7   AFSKAWFTSSA-VTSFSKSTTKSTSDTFFVGTRNAMPCNLPSNSGNTSFKAFAAPVEVGI 66

Query: 116 MFKAAALARLKSRSMSWCIHNVMFMSF 143
           M      ARLK    S C  ++ F SF
Sbjct: 67  MLSLHERARLK----SLCGLSIFFWSF 88

[Close]

BLAST of CmaCh09G000370 vs. NCBI nr
Match: gi|760437925|ref|XP_011396031.1| (hypothetical protein F751_3352, partial [Auxenochlorella protothecoides])

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 49  PFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFA 108
           PF+ PS A   AA   SA +  FS  T RSTTET  VGTR A+P+SLPLS G+T  TA A
Sbjct: 2   PFSSPSEAAFSAA-RMSAYLAGFSSTTVRSTTETSRVGTRKAMPVSLPLSAGSTLPTALA 61

Query: 109 APVLVGTM 117
           APV  G M
Sbjct: 62  APVEEGMM 68

[Close]

BLAST of CmaCh09G000370 vs. NCBI nr
Match: gi|818626879|gb|KKS74727.1| (hypothetical protein UV47_C0008G0001 [Parcubacteria group bacterium GW2011_GWA2_42_80])

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1


Query: 21  VSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPFFSMFT-TRST 80
           +S++S + E  + +KS +T G+  T K P         + A  + A + FF   T  +S 
Sbjct: 1   MSDKSAIAEAGLAIKSEETSGLLVTCKIPLYLLELDASRKAAFTCALVTFFRFRTKVKSD 60

Query: 81  TETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 128
            ET  VGTR+A P  +PLS G     A AAPV+VGT+F AAA AR KS
Sbjct: 61  KETQTVGTRTAKPSKIPLSSGMVSVVAIAAPVVVGTIFCAAARARRKS 108

The following BLAST results are available for this feature:

BLAST of CmaCh09G000370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000370 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BUM4_VITVI	5.6e-26	61.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031969 PE=4 SV=1	[more]
A0A0A9LVV8_ARUDO	3.7e-22	75.00	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0E9XPE2_ANGAN	1.9e-10	53.47	Uncharacterized protein OS=Anguilla anguilla PE=4 SV=1	[more]
A0A0U0VQQ5_STAHA	1.2e-07	51.72	Uncharacterised protein OS=Staphylococcus haemolyticus GN=ERS123952_02043 PE=4 S...	[more]
A0A146VXP5_FUNHE	4.4e-07	56.58	Zinc finger protein castor OS=Fundulus heteroclitus PE=4 SV=1	[more]

BLAST of CmaCh09G000370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147862555\|emb\|CAN81495.1\|	8.0e-26	61.16	hypothetical protein VITISV_031969 [Vitis vinifera]	[more]
gi\|897310964\|emb\|CPM89998.1\|	1.7e-07	51.72	Uncharacterised protein [Staphylococcus haemolyticus]	[more]
gi\|760437925\|ref\|XP_011396031.1\|	2.4e-06	57.35	hypothetical protein F751_3352, partial [Auxenochlorella protothecoides]	[more]
gi\|818626879\|gb\|KKS74727.1\|	9.2e-06	40.74	hypothetical protein UV47_C0008G0001 [Parcubacteria group bacterium GW2011_GWA2_...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000370.1	CmaCh09G000370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G000370	Lsi04G018270	Bottle gourd (USVL1VR-Ls)	cmalsiB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000370	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000370	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000370	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000370	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000370	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000370	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000370	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000370	Watermelon (Charleston Gray)	cmawcgB017
CmaCh09G000370	Watermelon (97103) v1	cmawmB039
CmaCh09G000370	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G000370	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G000370	Cucumber (Gy14) v2	cgybcmaB469
CmaCh09G000370	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000370	Silver-seed gourd	carcmaB0134
CmaCh09G000370	Silver-seed gourd	carcmaB0501
CmaCh09G000370	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000370	Watermelon (97103) v2	cmawmbB022
CmaCh09G000370	Wax gourd	cmawgoB0029