CmaCh09G000250 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cyclin-dependent kinase B2,2
Location	Cma_Chr09 : 131662 .. 133242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATAAAGTTGGGCCTGATGGCGAAAACCGATAATTATGCCCAAAAATCCAGGTTGAGGAACTGTCGGGGAGGCAGGACTCATTCTGTTGCTAACTTGGCTCTCAATTCATTTTGCGTGGAGAGAGAGAGAGGGAGAGAGACGATCTATTGTGATTGCATACGGCAGAAGGCTCACCTCATGATCAGGGTCCAGGACGAGGCAGAGGTCGGGGCCGTTGTGGCAGAGGAAGGTCTAGGGGTAGAGGTATGCAGATTTTGATTTTGTTTATTCTTCTTAATCCCTTCATTATGTTGTTGTTTATGGAAGGGTATGACTTTTATCATTTTATGGCTAGTTGTAGTTAATCTAGTTTCTTGCTTCAAGAAGTGAAGAGCATGTATGACCGCTAACAATTTGTTTTTATTTTATAATGATGTTGGTTTTAGGACCCCCGTTAATGGCTTTGTGGGTAACAAGCTTCTTGTATTTTATCTTCAGCCTTAACATTTTATTATGAAAATTTAAAGATATCGGTTGTTATTCTCACATTTTATCCCTCTTCAACGGCCCTTTGGCCTTGATCTTAAAATTTCCTTTAAGATTGGAGAATGGAATTGTACCCAATCTCGATTGTCCTTAACCGACAACAACCACCCACAGTTCATTAACACACGCCACCCTGTAGATTGTGTTTCTGAAGTTGTGAAGGCTGAAATGAAAGGGTTTGGGTGTACGGGTACCTCTGCTCTTAAACAACATTTTGAAAAGAAGGTCCATAAATTGGAGCAAGAAGAGAGAGTTTTACAGGTCATTTCTGTATCCAAAATATACACTCAACTGTCGTCATATATGTACACATATTTAGCTTTTATCTTGTTTTTGTTTTTGTTTTTGTTTTTGTAGAAAGAGACGGAGGAACTTAGATGTAAGTTTTCGAACATATTGTCTACATCTTGATGACGGGGTGCAAAAGTTGAAGCAAGAATATCTTCAGAGATTGAATGTTGTGGAGACCCAATTTCGTTTTTAGTCAAATTTCAAAATGTTATGCGAAAAGAATTTTAGGAAATCTTGTTGTTTCTTTCTTCACGCCATGTCAAATGCCAATTGTTGTTTTAAATGATTTATTTACGCAGGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATGCATGGCTACTGATCTGAAAAATTCATCAAGACTACCCGTCTATTTGCTCTTCGCCCCTCTCCTTCCTAAACAATTAGTAAAGAAAGCAATGGAGCATCCCTATTTTGATGTCTTGAACAGGACCATATCTCTGAGTGATGCTGTGTTGAATGAAGATTTAGTTGCTGAAACAAGCTTGACGGGTTCATACTTCAACATTTGCTACAAATTATATTTTCGATCTACTTGAGAATATATTATTATATTTTATTTCTTAGCAAACGACACAGATGTAGCCCATTATCATCCAAATATTTGACCGCTTGTTGAAGGTTTTTGCGGGTTCCATTGAATTAATTTGTCACACCAGGCCACACCTCTTCATTTGATGTCCCTGCTACAAAGTTCCAACCTCT

mRNA sequence

AAAATATAAAGTTGGGCCTGATGGCGAAAACCGATAATTATGCCCAAAAATCCAGGTTGAGGAACTGTCGGGGAGGCAGGACTCATTCTGTTGCTAACTTGGCTCTCAATTCATTTTGCGTGGAGAGAGAGAGAGGGAGAGAGACGATCTATTGTGATTGCATACGGCAGAAGGCTCACCTCATGATCAGGGTCCAGGACGAGGCAGAGGTCGGGGCCGTTGTGGCAGAGGAAGGTCTAGGGGTAGAGATTGGAGAATGGAATTGTACCCAATCTCGATTGTCCTTAACCGACAACAACCACCCACAGTTCATTAACACACGCCACCCTGTAGATTGTGTTTCTGAAGTTGTGAAGGCTGAAATGAAAGGGTTTGGGTGTACGGGTACCTCTGCTCTTAAACAACATTTTGAAAAGAAGGTCCATAAATTGGAGCAAGAAGAGAGAGTTTTACAGAAAGAGACGGAGGAACTTAGATGTAAGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATGCATGGCTACTGATCTGAAAAATTCATCAAGACTACCCGTCTATTTGCTCTTCGCCCCTCTCCTTCCTAAACAATTAGTAAAGAAAGCAATGGAGCATCCCTATTTTGATGTCTTGAACAGGACCATATCTCTGAGTGATGCTGTGTTGAATGAAGATTTAGTTGCTGAAACAAGCTTGACGGGTTCATACTTCAACATTTGCTACAAATTATATTTTCGATCTACTTGAGAATATATTATTATATTTTATTTCTTAGCAAACGACACAGATGTAGCCCATTATCATCCAAATATTTGACCGCTTGTTGAAGGTTTTTGCGGGTTCCATTGAATTAATTTGTCACACCAGGCCACACCTCTTCATTTGATGTCCCTGCTACAAAGTTCCAACCTCT

Coding sequence (CDS)

ATGGCGAAAACCGATAATTATGCCCAAAAATCCAGGTTGAGGAACTGTCGGGGAGGCAGGACTCATTCTGTTGCTAACTTGGCTCTCAATTCATTTTGCGTGGAGAGAGAGAGAGGGAGAGAGACGATCTATTGTGATTGCATACGGCAGAAGGCTCACCTCATGATCAGGGTCCAGGACGAGGCAGAGGTCGGGGCCGTTGTGGCAGAGGAAGGTCTAGGGGTAGAGATTGGAGAATGGAATTGTACCCAATCTCGATTGTCCTTAACCGACAACAACCACCCACAGTTCATTAACACACGCCACCCTGTAGATTGTGTTTCTGAAGTTGTGAAGGCTGAAATGAAAGGGTTTGGGTGTACGGGTACCTCTGCTCTTAAACAACATTTTGAAAAGAAGGTCCATAAATTGGAGCAAGAAGAGAGAGTTTTACAGAAAGAGACGGAGGAACTTAGATGTAAGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATGCATGGCTACTGATCTGAAAAATTCATCAAGACTACCCGTCTATTTGCTCTTCGCCCCTCTCCTTCCTAAACAATTAGTAAAGAAAGCAATGGAGCATCCCTATTTTGATGTCTTGAACAGGACCATATCTCTGAGTGATGCTGTGTTGAATGAAGATTTAGTTGCTGAAACAAGCTTGACGGGTTCATACTTCAACATTTGCTACAAATTATATTTTCGATCTACTTGA

Protein sequence

MAKTDNYAQKSRLRNCRGGRTHSVANLALNSFCVERERGRETIYCDCIRQKAHLMIRVQDEAEVGAVVAEEGLGVEIGEWNCTQSRLSLTDNNHPQFINTRHPVDCVSEVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQGQNKEGKTVLYLVFECMATDLKNSSRLPVYLLFAPLLPKQLVKKAMEHPYFDVLNRTISLSDAVLNEDLVAETSLTGSYFNICYKLYFRST

Homology

[Close]

BLAST of CmaCh09G000250 vs. Swiss-Prot
Match: KN4C_ARATH (Kinesin-like protein KIN-4C OS=Arabidopsis thaliana GN=KIN4C PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-07
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQG 162
           E  +AEMK F   GTS LKQH+EKKV+ LEQE+R LQ+E E LR  L  +  G
Sbjct: 566 EEKEAEMKRFSSGGTSVLKQHYEKKVYDLEQEKRALQREIEGLRHNLASIPSG 618

[Close]

BLAST of CmaCh09G000250 vs. Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.5e-06
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 142 RVLQKETEELRCKLMDVKQGQNKEGKTVLYLVFECMATDLKNSSR 187
           R+L ++   +R  L+DVKQGQNKEGKTVLYLVFE M TDLK   R
Sbjct: 66  RMLSRDPHVVR--LLDVKQGQNKEGKTVLYLVFEYMDTDLKKYIR 108

[Close]

BLAST of CmaCh09G000250 vs. TrEMBL
Match: A0A0A0LGX1_CUCSA (Chromosome-associated kinesin KIF4A OS=Cucumis sativus GN=Csa_3G891640 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDV 159
           E  +AEMK F  T TS +KQH+EKKVH+LEQE+R LQKE EELRC L ++
Sbjct: 574 EQKEAEMKRFAGTDTSVIKQHYEKKVHELEQEKRALQKEIEELRCNLSNI 623

[Close]

BLAST of CmaCh09G000250 vs. TrEMBL
Match: B9GN43_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10620g PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQGQNKEGKT 168
           E  +AEMK F    TS LKQH+EKKVH LEQE++VLQKE  ELRC L+++    +   K 
Sbjct: 571 EQKEAEMKRFTSVDTSVLKQHYEKKVHDLEQEKKVLQKEIGELRCNLVNISSTSDDGAKK 630

Query: 169 VL--YL----VFECMATDLKNSSRLPVYLL 193
           +   YL    V E    +LK        LL
Sbjct: 631 LKDEYLQKLTVLEAQVAELKKKQDAQAQLL 660

[Close]

BLAST of CmaCh09G000250 vs. TrEMBL
Match: B9RJX4_RICCO (Chromosome-associated kinesin KIF4A, putative OS=Ricinus communis GN=RCOM_1039560 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.7e-06
Identity = 38/90 (42.22%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQGQN----- 168
           E  +AEMK F    TS LKQH+EKKV +LEQE+R LQKE E+LRC L ++    +     
Sbjct: 577 EQKEAEMKRFTSVDTSVLKQHYEKKVQELEQEKRALQKEIEDLRCNLSNISSISDDGAQK 636

Query: 169 -KEGKTVLYLVFECMATDLKNSSRLPVYLL 193
            KE       V E    +LK        LL
Sbjct: 637 LKENYLQKLTVLESQVAELKKKQDAQAQLL 666

[Close]

BLAST of CmaCh09G000250 vs. TAIR10
Match: AT5G60930.1 (AT5G60930.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-08
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQG 162
           E  +AEMK F   GTS LKQH+EKKV+ LEQE+R LQ+E E LR  L  +  G
Sbjct: 566 EEKEAEMKRFSSGGTSVLKQHYEKKVYDLEQEKRALQREIEGLRHNLASIPSG 618

[Close]

BLAST of CmaCh09G000250 vs. TAIR10
Match: AT1G20930.1 (AT1G20930.1 cyclin-dependent kinase B2;2)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 154 KLMDVKQGQNKEGKTVLYLVFECMATDLKNSSR 187
           +LMDVKQG NKEGKTVLYLVFE + TDLK   R
Sbjct: 78  RLMDVKQGINKEGKTVLYLVFEYVDTDLKKFIR 110

[Close]

BLAST of CmaCh09G000250 vs. NCBI nr
Match: gi|659132373|ref|XP_008466163.1| (PREDICTED: chromosome-associated kinesin KIF4 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDV 159
           E  +AEMK F  T TS LKQH+EKKVH+LEQE+R LQKE EELRC L ++
Sbjct: 575 EQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNI 624

[Close]

BLAST of CmaCh09G000250 vs. NCBI nr
Match: gi|449436952|ref|XP_004136256.1| (PREDICTED: kinesin-like protein BC2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDV 159
           E  +AEMK F  T TS +KQH+EKKVH+LEQE+R LQKE EELRC L ++
Sbjct: 574 EQKEAEMKRFAGTDTSVIKQHYEKKVHELEQEKRALQKEIEELRCNLSNI 623

[Close]

BLAST of CmaCh09G000250 vs. NCBI nr
Match: gi|923893373|ref|XP_013717621.1| (PREDICTED: cyclin-dependent kinase B2-2-like isoform X2 [Brassica napus])

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-07
Identity = 41/78 (52.56%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 155 LMDVKQGQNKEGKTVLYLVFECMATDLK---NSSRLPVYLLFAPLLPKQLV--------- 214
           LMDVKQG NKE +TVLYLVFE + TDLK    S R P + +    + K LV         
Sbjct: 2   LMDVKQGLNKESRTVLYLVFEYLDTDLKKFIRSFRQPGHNILQETVKKMLVYEPAKRISA 61

Query: 215 KKAMEHPYFDVLNRTISL 221
           KKAMEHPYFD L    SL
Sbjct: 62  KKAMEHPYFDDLPDKASL 79

[Close]

BLAST of CmaCh09G000250 vs. NCBI nr
Match: gi|224063323|ref|XP_002301096.1| (hypothetical protein POPTR_0002s10620g [Populus trichocarpa])

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQGQNKEGKT 168
           E  +AEMK F    TS LKQH+EKKVH LEQE++VLQKE  ELRC L+++    +   K 
Sbjct: 571 EQKEAEMKRFTSVDTSVLKQHYEKKVHDLEQEKKVLQKEIGELRCNLVNISSTSDDGAKK 630

Query: 169 VL--YL----VFECMATDLKNSSRLPVYLL 193
           +   YL    V E    +LK        LL
Sbjct: 631 LKDEYLQKLTVLEAQVAELKKKQDAQAQLL 660

[Close]

BLAST of CmaCh09G000250 vs. NCBI nr
Match: gi|743802562|ref|XP_011016937.1| (PREDICTED: chromosome-associated kinesin KIF4-like [Populus euphratica])

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 109 EVVKAEMKGFGCTGTSALKQHFEKKVHKLEQEERVLQKETEELRCKLMDVKQGQNKEGKT 168
           E  +AEMK F    TS LKQH+EKKVH LEQE++VLQKE  ELRC L ++    +   K 
Sbjct: 571 EQKEAEMKRFASVDTSVLKQHYEKKVHDLEQEKKVLQKEIGELRCNLGNISSTSDDGAKK 630

Query: 169 VL--YL----VFECMATDLK 183
           +   YL    V E    +LK
Sbjct: 631 LKDEYLQKLTVLEAQVAELK 650

The following BLAST results are available for this feature:

BLAST of CmaCh09G000250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KN4C_ARATH	7.7e-07	56.60	Kinesin-like protein KIN-4C OS=Arabidopsis thaliana GN=KIN4C PE=2 SV=2	[more]
CDC2D_ANTMA	8.5e-06	64.44	Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=...	[more]

BLAST of CmaCh09G000250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX1_CUCSA	2.4e-07	64.00	Chromosome-associated kinesin KIF4A OS=Cucumis sativus GN=Csa_3G891640 PE=3 SV=1	[more]
B9GN43_POPTR	1.2e-06	44.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10620g PE=3 SV=1	[more]
B9RJX4_RICCO	7.7e-06	42.22	Chromosome-associated kinesin KIF4A, putative OS=Ricinus communis GN=RCOM_103956...	[more]

BLAST of CmaCh09G000250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60930.1	4.3e-08	56.60	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G20930.1	2.4e-06	75.76	cyclin-dependent kinase B2;2	[more]

BLAST of CmaCh09G000250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132373\|ref\|XP_008466163.1\|	2.0e-07	66.00	PREDICTED: chromosome-associated kinesin KIF4 [Cucumis melo]	[more]
gi\|449436952\|ref\|XP_004136256.1\|	3.4e-07	64.00	PREDICTED: kinesin-like protein BC2 [Cucumis sativus]	[more]
gi\|923893373\|ref\|XP_013717621.1\|	7.7e-07	52.56	PREDICTED: cyclin-dependent kinase B2-2-like isoform X2 [Brassica napus]	[more]
gi\|224063323\|ref\|XP_002301096.1\|	1.7e-06	44.44	hypothetical protein POPTR_0002s10620g [Populus trichocarpa]	[more]
gi\|743802562\|ref\|XP_011016937.1\|	5.0e-06	47.50	PREDICTED: chromosome-associated kinesin KIF4-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0044430	cytoskeletal part
cellular_component	GO:0015630	microtubule cytoskeleton
cellular_component	GO:0043234	protein complex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000250.1	CmaCh09G000250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 127..154 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000250	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000250	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000250	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000250	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000250	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000250	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000250	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000250	Watermelon (Charleston Gray)	cmawcgB017
CmaCh09G000250	Watermelon (97103) v1	cmawmB039
CmaCh09G000250	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G000250	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G000250	Bottle gourd (USVL1VR-Ls)	cmalsiB028
CmaCh09G000250	Cucumber (Gy14) v2	cgybcmaB469
CmaCh09G000250	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000250	Silver-seed gourd	carcmaB0134
CmaCh09G000250	Silver-seed gourd	carcmaB0501
CmaCh09G000250	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000250	Watermelon (97103) v2	cmawmbB022
CmaCh09G000250	Wax gourd	cmawgoB0029