CmaCh08G009860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G009860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SWIb domain-containing protein
Location	Cma_Chr08 : 6162668 .. 6164782 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAGGTCTGAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGGAGCTAAAAGCTTCAGGTGCCGCTGCTACCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTTCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATGATCTCCAGGTTCTTTCATTTCTCTACTGTTTTTGCTGATATGGATTATTATTATTTTTTTTTGGTATTGTTGCTGTAGTTCCTTGTTTCCTGCAGCCTGTTCGTTTGCCTCGTTAATTTCTCCTTCATTTTGTTGAGATTGCCTTGAAAGTTGATTTTAACTCATCTTAGAGCTTGAAATTTTGGTTGTAGTGTTGGTTTCATATAGTTTCTTCCTTGTTGTAGGTTGATGAATCTAAGGCCTATGAAATGGAAGTTCTGAATTCGAAAAATAGGTTAATTTATAGGGAAACTCCCACTATTAGTTCACGAACCAAATAATTCTCAAGTCTGAGCAATCGAATTCGTAATTTATTAGATGAACATGGACCATCTTTACCCTCTGTTCCCAAGTTCTATGTACCTTGAATAATCAACAAGCTATTTTGGCCATAAATGCATTTATTGTCACATGGATTTGGGTTTATGCCCTTCTTCAAAAAAGTTAGCTGCTACTCAGAGGTTGGAGCTCCTACCTAAATCCCTGTCCAATATTTTTTAGGAAAGCCCCCCTGATGTCCAATTTTGAGTGTAAATACTTTCATTGAAGTTCATAAAAGGCTAAACCGGGCTTTGATGCCTCTTGATCAAATGAGTGGATATGTTTGCTATGGGTTCTGAAGGGTGTGCGAGTATGCACTGATAATCTAGCCGAAAGAAGCTTCTCCCACCTTGACCCTGTAATGTGAACAATTTTTGTTTTAATTGTAGAGTTTATCCGTATGATTCGGAGATCGTGTGGCTTTGAAAGTTAGAATCTTGTCTTTATGGTTTCATACATAGTTTCTAATATTTGATAAAATCTGACTATTGAAGGGATTATTTAGGAGTATTTTATCAAACTATAGGGACTAAATTATAACTTTCGATGCTATTTAGAACAAGTTATGCAATATACATAAACTCCTTAACATAGTTCAAGGTAATAAATTAGAATTCAACCTATTCTACAAACTAATAGTTGTTTTTTAATATTTTTTTATAAGAGATAATTTCGTTGATGTTTGAAGTCTACAAAGAAGATATAATATCAAGAAGTTTACTAAAAAAACCTTCCCAATTTACAATGAGAGTGGTATAATTGTAGGAAGCGAAAATATTAGATTGGCTACACCAAGATATATCTTGATAAACAAGATTATCGAAGAGTTTTATATAAATCTAGGTCTTTTTCATGAAAATTCATGATTTCTTTCTCTACACGGATCCATAAGAAAGAAAGCCATGATGAATTTTTTTTATTCATAGTAGAGTTTTTTTCATTCTTGAAAGAAGGGTACCATGTGCAAATTAGTAGTTGCCTGCCACATCTAACCAATTTAGTCCAAATTTATCTGATGGAGTAAGTCAAACTAGTATCCTGTTAATGGTGTTAACTGTAGAGATTAACCTAGTAGTTCCTCTTTTCTTCCTTTTCTGTTTTATTTGGAAGACTTTGCTGATACATAACACACATTATGGTGTGCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCATTTTGTGAAGTCGTCTAGTTAACCATCAAACTTCCAATGCATGTATCGACTTAGTTGTTCTAACAGTTATCTCTCAACCTATCTTCCAAATCGCTGAGATGATATTGTGCTGTGTTTGGCTAATCTTATGTACTCCTTGGTTTGTCTCTGCTTTAAGAAAAAGAGGTATTTCATGCCCCGACCTTGTTGTTCATT

mRNA sequence

ATGGCGTCAGGTCTGAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGGAGCTAAAAGCTTCAGGTGCCGCTGCTACCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTTCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATGATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCATTTTGTGAAGTCGTCTAGTTAACCATCAAACTTCCAATGCATGTATCGACTTAGTTGTTCTAACAGTTATCTCTCAACCTATCTTCCAAATCGCTGAGATGATATTGTGCTGTGTTTGGCTAATCTTATGTACTCCTTGGTTTGTCTCTGCTTTAAGAAAAAGAGGTATTTCATGCCCCGACCTTGTTGTTCATT

Coding sequence (CDS)

ATGGCGTCAGGTCTGAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGGAGCTAAAAGCTTCAGGTGCCGCTGCTACCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTTCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATGATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCATTTTGTGAAGTCGTCTAGTTAA

Protein sequence

MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

Homology

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BLAST of CmaCh08G009860 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 46  AAATRKKSEAGE---KKEGNR---SGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYI 105
           A  TRK+ E GE   K++ N+   +  + K +++SP LA FLG+ + SR + VK++W YI
Sbjct: 90  AKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYI 149

Query: 106 KLNDLQNPANKRQINCDEKLKAIFD 125
           K +DLQ+P +KR I CD+KLK++F+
Sbjct: 150 KAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of CmaCh08G009860 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 45/137 (32.85%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 16  RTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAG------EKKEG--NRSGGI 75
           R+L D LK      ++  A+    E+  S  ++  +K+++       EKK+G  ++S   
Sbjct: 66  RSLEDLLKE-----NATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPIS 125

Query: 76  FKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGRE 135
            + V +S +LA  LG  E +R+E V+++W+YIK ++LQNP NK++I CDEKL+ I    +
Sbjct: 126 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--K 185

Query: 136 NVGILEIGKLLSPHFVK 145
           +  + E+ K+L+ H  +
Sbjct: 186 STNMFEMHKILASHMTE 195

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BLAST of CmaCh08G009860 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1


Query: 42  KASGAAATRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKL 101
           K    + +++K +  +  + N      + V +S  L  FLG  E  R++ VK IW YIK 
Sbjct: 97  KGKSESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 156

Query: 102 NDLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH 142
           +DLQNP ++R+I CDEK++ IF   + + +  + KLL+ H
Sbjct: 157 HDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

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BLAST of CmaCh08G009860 vs. TrEMBL
Match: A0A0A0KCY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-44
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA + +KS+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

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BLAST of CmaCh08G009860 vs. TrEMBL
Match: A0A0A0L3V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31
Identity = 85/157 (54.14%), Postives = 106/157 (67.52%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSA------AAVSPKGELK------ASGAAA 60
           M+SG NNG R+FR CR LL   KS+    ++A      + + PK +L       +S AA 
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  TRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPA 120
                E   KKE +R  GI K  QVSPAL+ FLG+SE+SRS+AV QIWSYIKL++LQNP 
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           NKR+I CD+KLKAIF+GRE VG LEIGK L+ HFVK+
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of CmaCh08G009860 vs. TrEMBL
Match: M5XE20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.9e-30
Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 1


Query: 6   NNGTRLFRGCRTLLDSLKSTTQAYSSA-----AAVSPKGELKASGAAATRKKSEAGEKKE 65
           +N  R+FRGCR L+   +S++    +A     AA + + + KA   A  +  +++ + K 
Sbjct: 4   SNVFRVFRGCRALMAPARSSSSTAGAAVSASKAATAAEPKPKAKPKAKPKAAADSTKPKI 63

Query: 66  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 125
            NRS GI K   +SPAL  FLG SESSR+EAVKQIW++IKL++LQNPANKR+I+CD+KLK
Sbjct: 64  PNRSLGIMKPTPISPALGSFLGASESSRAEAVKQIWAHIKLHNLQNPANKREIHCDDKLK 123

Query: 126 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF+G+E VG LEIGKLLS HFVK+
Sbjct: 124 AIFEGKEKVGFLEIGKLLSRHFVKT 148

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BLAST of CmaCh08G009860 vs. TrEMBL
Match: A0A087H6P0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G029600 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 10  RLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKEGNRSGGIFK 69
           R+FRGCR+LL        + S  +  + K   K+   A  +++S +  K+  +RS GIFK
Sbjct: 7   RVFRGCRSLLAPASKPITSSSVVSGATKKSAAKSKTKAKPKQRSVSPAKRT-SRSAGIFK 66

Query: 70  SVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGRENV 129
              VSP LA FLG  E++R++AVK+IW+Y+K +DLQNPANKR+I CDEKLK IFDG++ V
Sbjct: 67  MTPVSPVLAQFLGTGETNRTDAVKEIWTYVKSHDLQNPANKREIFCDEKLKLIFDGKDKV 126

Query: 130 GILEIGKLLSPHFVKSS 147
           G+LEI KLL+PHFVK++
Sbjct: 127 GLLEITKLLAPHFVKTA 142

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BLAST of CmaCh08G009860 vs. TrEMBL
Match: A0A059CED4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01092 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.2e-28
Identity = 80/140 (57.14%), Postives = 94/140 (67.14%), Query Frame = 1


Query: 9   TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATR--KKSEAGEKKEGNRSGG 68
           +R+FRGCR LL   KS + A  +AAA  P    KAS AAA    K + A   K  +R  G
Sbjct: 11  SRVFRGCRALLAPAKSASSA--AAAAAPPAAPAKASKAAAKAKPKAAAAAVPKAPSRPSG 70

Query: 69  IFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGR 128
           I K   VSPALA FL   E+SR EAVKQIW+YIK   LQ+  NKR+INCDE+LK +F+GR
Sbjct: 71  IQKVTPVSPALARFLNAGEASRVEAVKQIWAYIKKEGLQDSINKREINCDERLKTLFEGR 130

Query: 129 ENVGILEIGKLLSPHFVKSS 147
           E VG LEIGKLLS HFVK+S
Sbjct: 131 EKVGFLEIGKLLSRHFVKTS 148

[Close]

BLAST of CmaCh08G009860 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 5.8e-29
Identity = 70/137 (51.09%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 11  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKEGNRSGGIFK 70
           +FRG R+LL  + ++T+   S+ +   P  + KA      + KS++  KK   RS GIFK
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP-RSTGIFK 67

Query: 71  SVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGRENV 130
              VSP LA FLG  E+SR++A+K IW+YIK +DLQNPA+KR+I CDE LK IF+G++ V
Sbjct: 68  VTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKV 127

Query: 131 GILEIGKLLSPHFVKSS 147
           G LEI KLLSPHFVK++
Sbjct: 128 GFLEISKLLSPHFVKTA 143

[Close]

BLAST of CmaCh08G009860 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-24
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 51  KKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANK 110
           K + +   K G +  GI K V VS  LA F+G +E SR+ AVK+IW YIKLN+LQNP NK
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 111 RQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS 147
           R+I CDE+LK IF G++ VG LEI KLLS HF KS+
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

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BLAST of CmaCh08G009860 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-23
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1


Query: 44  SGAAATRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLND 103
           S AA     + AGE K      GIFK+  VS  LA F G  E +R  A+K++W Y+KL++
Sbjct: 16  SKAATVEAVTVAGEGK------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHN 75

Query: 104 LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           LQNPANK++I+CD+KLK IFDG++ VGI EI KLLSPHF KS
Sbjct: 76  LQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CmaCh08G009860 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-19
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 44  SGAAATRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLND 103
           S AAA+   +   + +E     GI K   VS A+   +G+ E  R++A+K+IW+YIK +D
Sbjct: 48  SAAAASSDPTTTTKTREPR---GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHD 107

Query: 104 LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFV 144
           LQ+P NKR I CDEKLK IF+G+E VG LEI KL+ PHF+
Sbjct: 108 LQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of CmaCh08G009860 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 9.3e-19
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 1


Query: 9   TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKEGNRSGGIF 68
           T  FR   T L SL+  +          P  +L+   A  +  +S            GI 
Sbjct: 16  TTSFRNPSTPLSSLRFASH---------PAAKLRLVRAVTSATESSEPTATNKRVPRGIM 75

Query: 69  KSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLKAIFDGREN 128
           K   VSP +   + + E +R++A+K+IW+YIK +DLQ+P NKR+I CDEKLK IF+GR+ 
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGILEIGKLLSPHFV 144
           VG LEI KL+ PHF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

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BLAST of CmaCh08G009860 vs. NCBI nr
Match: gi|659120238|ref|XP_008460088.1| (PREDICTED: protein TRI1-like [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA + +KS+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120
            N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIKLN+LQN  +KRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of CmaCh08G009860 vs. NCBI nr
Match: gi|449473955|ref|XP_004154030.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA + +KS+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

[Close]

BLAST of CmaCh08G009860 vs. NCBI nr
Match: gi|449432287|ref|XP_004133931.1| (PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 85/157 (54.14%), Postives = 106/157 (67.52%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSA------AAVSPKGELK------ASGAAA 60
           M+SG NNG R+FR CR LL   KS+    ++A      + + PK +L       +S AA 
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  TRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPA 120
                E   KKE +R  GI K  QVSPAL+ FLG+SE+SRS+AV QIWSYIKL++LQNP 
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           NKR+I CD+KLKAIF+GRE VG LEIGK L+ HFVK+
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

[Close]

BLAST of CmaCh08G009860 vs. NCBI nr
Match: gi|659075536|ref|XP_008438197.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 5.8e-31
Identity = 83/159 (52.20%), Postives = 105/159 (66.04%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAA--------------AVSPKGELKASGA 60
           M+SG NNG R+FR CRTLL   KS+    ++A                 +P   + A+G 
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AATRKKSEAGEKKEGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQN 120
           AAT    E   KK  +R  GI K  QVSPAL+ FLG+SE+SR++AV QIWSYIKL++LQN
Sbjct: 61  AAT---PEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQN 120

Query: 121 PANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           P NKR+I CD+KLKAIF+GRE V  LEIGK+L+ HFVK+
Sbjct: 121 PDNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

[Close]

BLAST of CmaCh08G009860 vs. NCBI nr
Match: gi|470143244|ref|XP_004307291.1| (PREDICTED: upstream activation factor subunit spp27-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 1


Query: 10  RLFRGCRTLLDSLKSTTQAYSS-------AAAVSPKGELKASGAAATRKKSEAGE---KK 69
           R+FRGCR LL   KS++   S+       AAA +PK + KA   A  + K++A     K+
Sbjct: 8   RVFRGCRALLAPAKSSSSTSSAGASAVKVAAAAAPKSKAKAKAKAKAKPKTDADAIKPKR 67

Query: 70  EGNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKL 129
             N + GI K   +SPAL  FLG +ESSR+EAVKQIW +IKLN LQNPANK++I CD KL
Sbjct: 68  NVNMNAGIMKPRPISPALGSFLGAAESSRAEAVKQIWDHIKLNSLQNPANKKEIICDNKL 127

Query: 130 KAIFDGRENVGILEIGKLLSPHFVKS 146
           K +F+G+E V  LEIGKLLSPHFVK+
Sbjct: 128 KELFEGKEKVNFLEIGKLLSPHFVKA 153

The following BLAST results are available for this feature:

BLAST of CmaCh08G009860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UAF30_SCHPO	1.8e-11	44.71	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	2.8e-09	32.85	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
TRI1_YEAST	6.3e-09	35.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]

BLAST of CmaCh08G009860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9_CUCSA	2.5e-44	69.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1	[more]
A0A0A0L3V0_CUCSA	1.8e-31	54.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1	[more]
M5XE20_PRUPE	5.9e-30	53.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1	[more]
A0A087H6P0_ARAAL	2.5e-28	51.09	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G029600 PE=4 SV=1	[more]
A0A059CED4_EUCGR	3.2e-28	57.14	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01092 PE=4 SV=1	[more]

BLAST of CmaCh08G009860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03590.1	5.8e-29	51.09	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	5.6e-24	57.29	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.8e-23	54.90	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	4.2e-19	49.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	9.3e-19	40.00	SWIB/MDM2 domain superfamily protein	[more]

BLAST of CmaCh08G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120238\|ref\|XP_008460088.1\|	1.5e-47	71.03	PREDICTED: protein TRI1-like [Cucumis melo]	[more]
gi\|449473955\|ref\|XP_004154030.1\|	3.5e-44	69.66	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus]	[more]
gi\|449432287\|ref\|XP_004133931.1\|	2.6e-31	54.14	PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus]	[more]
gi\|659075536\|ref\|XP_008438197.1\|	5.8e-31	52.20	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]	[more]
gi\|470143244\|ref\|XP_004307291.1\|	3.8e-30	53.42	PREDICTED: upstream activation factor subunit spp27-like [Fragaria vesca subsp. ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G009860.1	CmaCh08G009860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 59..145 score: 1.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 score: 4.5
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 64..144 score: 5.01
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..147 score: 8.0
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 45..145 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G009860	Cucsa.362570	Cucumber (Gy14) v1	cgycmaB1008
CmaCh08G009860	Cucsa.257440	Cucumber (Gy14) v1	cgycmaB0730
CmaCh08G009860	Cla021328	Watermelon (97103) v1	cmawmB871
CmaCh08G009860	Cla006979	Watermelon (97103) v1	cmawmB881
CmaCh08G009860	Csa3G126840	Cucumber (Chinese Long) v2	cmacuB892
CmaCh08G009860	Csa6G078570	Cucumber (Chinese Long) v2	cmacuB906
CmaCh08G009860	MELO3C006211	Melon (DHL92) v3.5.1	cmameB852
CmaCh08G009860	ClCG05G002470	Watermelon (Charleston Gray)	cmawcgB799
CmaCh08G009860	ClCG06G000610	Watermelon (Charleston Gray)	cmawcgB806
CmaCh08G009860	CSPI03G09760	Wild cucumber (PI 183967)	cmacpiB910
CmaCh08G009860	CmoCh14G020250	Cucurbita moschata (Rifu)	cmacmoB880
CmaCh08G009860	Lsi05G019370	Bottle gourd (USVL1VR-Ls)	cmalsiB835
CmaCh08G009860	Cp4.1LG17g02950	Cucurbita pepo (Zucchini)	cmacpeB916
CmaCh08G009860	Cp4.1LG03g17270	Cucurbita pepo (Zucchini)	cmacpeB926
CmaCh08G009860	MELO3C006211.2	Melon (DHL92) v3.6.1	cmamedB953
CmaCh08G009860	MELO3C022482.2	Melon (DHL92) v3.6.1	cmamedB916
CmaCh08G009860	CsaV3_3G009900	Cucumber (Chinese Long) v3	cmacucB1057
CmaCh08G009860	CsaV3_6G006380	Cucumber (Chinese Long) v3	cmacucB1075
CmaCh08G009860	Cla97C06G109840	Watermelon (97103) v2	cmawmbB923
CmaCh08G009860	Cla97C05G082970	Watermelon (97103) v2	cmawmbB916
CmaCh08G009860	CsGy6G006050	Cucumber (Gy14) v2	cgybcmaB874
CmaCh08G009860	CsGy3G009850	Cucumber (Gy14) v2	cgybcmaB462
CmaCh08G009860	Carg14851	Silver-seed gourd	carcmaB0880

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G009860	CmaCh14G019650	Cucurbita maxima (Rimu)	cmacmaB295

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G009860	Silver-seed gourd	carcmaB0319
CmaCh08G009860	Silver-seed gourd	carcmaB0321
CmaCh08G009860	Silver-seed gourd	carcmaB1495
CmaCh08G009860	Wax gourd	cmawgoB1093
CmaCh08G009860	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh08G009860	Cucurbita maxima (Rimu)	cmacmaB388
CmaCh08G009860	Cucurbita maxima (Rimu)	cmacmaB557
CmaCh08G009860	Cucurbita moschata (Rifu)	cmacmoB887
CmaCh08G009860	Cucurbita moschata (Rifu)	cmacmoB902
CmaCh08G009860	Cucurbita moschata (Rifu)	cmacmoB912
CmaCh08G009860	Wild cucumber (PI 183967)	cmacpiB926
CmaCh08G009860	Melon (DHL92) v3.5.1	cmameB818
CmaCh08G009860	Cucurbita pepo (Zucchini)	cmacpeB895
CmaCh08G009860	Cucurbita pepo (Zucchini)	cmacpeB908
CmaCh08G009860	Bottle gourd (USVL1VR-Ls)	cmalsiB813