CmaCh08G004640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G004640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DUF4228 domain protein
Location	Cma_Chr08 : 2615548 .. 2616036 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGTTTTTCTGCATGTTTCTCTTTGAATTCAACTCAATCAGCTAAGCTTCTAGACAGTGATGGAGGTCTGATCGAAAAGGTTAGGCTTCCAGTGAAAGCGGCGGAGCTGATGCTGGAGAGGCCTGGCTATGTCATCTCTTCGGTTGACGTGCTCCGGCGGACTCGCCGGATTTCGGCCTTGAAAGCTGATGATGAGCTTGTGGGTGGTAAAATATATGTGCTGGTGGCTTTGGGGAGAATTGGGTCCAAAGTTTCAGTGGTGGAATTGGAGAATTTGGAGTTGGGCTGCAAGAATAAAGGGAAGAAGATTGGTTCGAAGGTGCTGCCGGCGGCGGCGGCGGAGGAAGGAAAGGAAGAGGATATCGGAAGTGGAATTACTGGTTCTGATCAATTGAGTTGTGGTCGTGGGAACTATAAGCGATGGAATCCCAATTTGGAATCGATTTCTGAGGACTTTTGCCATTCTTTTAGAGAGAAACATTAG

mRNA sequence

ATGGGGTGTTTTTCTGCATGTTTCTCTTTGAATTCAACTCAATCAGCTAAGCTTCTAGACAGTGATGGAGGTCTGATCGAAAAGGTTAGGCTTCCAGTGAAAGCGGCGGAGCTGATGCTGGAGAGGCCTGGCTATGTCATCTCTTCGGTTGACGTGCTCCGGCGGACTCGCCGGATTTCGGCCTTGAAAGCTGATGATGAGCTTGTGGGTGGTAAAATATATGTGCTGGTGGCTTTGGGGAGAATTGGGTCCAAAGTTTCAGTGGTGGAATTGGAGAATTTGGAGTTGGGCTGCAAGAATAAAGGGAAGAAGATTGGTTCGAAGGTGCTGCCGGCGGCGGCGGCGGAGGAAGGAAAGGAAGAGGATATCGGAAGTGGAATTACTGGTTCTGATCAATTGAGTTGTGGTCGTGGGAACTATAAGCGATGGAATCCCAATTTGGAATCGATTTCTGAGGACTTTTGCCATTCTTTTAGAGAGAAACATTAG

Coding sequence (CDS)

ATGGGGTGTTTTTCTGCATGTTTCTCTTTGAATTCAACTCAATCAGCTAAGCTTCTAGACAGTGATGGAGGTCTGATCGAAAAGGTTAGGCTTCCAGTGAAAGCGGCGGAGCTGATGCTGGAGAGGCCTGGCTATGTCATCTCTTCGGTTGACGTGCTCCGGCGGACTCGCCGGATTTCGGCCTTGAAAGCTGATGATGAGCTTGTGGGTGGTAAAATATATGTGCTGGTGGCTTTGGGGAGAATTGGGTCCAAAGTTTCAGTGGTGGAATTGGAGAATTTGGAGTTGGGCTGCAAGAATAAAGGGAAGAAGATTGGTTCGAAGGTGCTGCCGGCGGCGGCGGCGGAGGAAGGAAAGGAAGAGGATATCGGAAGTGGAATTACTGGTTCTGATCAATTGAGTTGTGGTCGTGGGAACTATAAGCGATGGAATCCCAATTTGGAATCGATTTCTGAGGACTTTTGCCATTCTTTTAGAGAGAAACATTAG

Protein sequence

MGCFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKIGSKVLPAAAAEEGKEEDIGSGITGSDQLSCGRGNYKRWNPNLESISEDFCHSFREKH

Homology

[Close]

BLAST of CmaCh08G004640 vs. TrEMBL
Match: A0A0A0K830_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407620 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.0e-60
Identity = 125/165 (75.76%), Postives = 138/165 (83.64%), Query Frame = 1


Query: 1   MGCFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRIS 60
           MGCFSACFS  ST +AKLLD DGGLI K +LPVKAAELMLE PG+VIS VDVLRRTRRIS
Sbjct: 1   MGCFSACFSSKSTNTAKLLDIDGGLIGKFKLPVKAAELMLESPGHVISPVDVLRRTRRIS 60

Query: 61  ALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKIGSKVLPA---AAAEE 120
           ALKADDEL+GGKIYV+VA+GRIGSKVS+ ELEN +L CKN+ KK GSKV PA   AA   
Sbjct: 61  ALKADDELLGGKIYVVVAVGRIGSKVSMAELENFDLTCKNRVKKNGSKVQPAVATAAMVA 120

Query: 121 GKEEDIGSGITGSDQLSCGRGNYKRWNPNLESISEDFCHSFREKH 163
            +EE+IG G+ GSDQL+C RGNYKRWNPNLESI EDF  SFREKH
Sbjct: 121 EEEEEIGGGVCGSDQLNCVRGNYKRWNPNLESICEDFSLSFREKH 165

[Close]

BLAST of CmaCh08G004640 vs. TrEMBL
Match: A0A0D2PUN5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G140400 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.7e-23
Identity = 66/150 (44.00%), Postives = 98/150 (65.33%), Query Frame = 1


Query: 6   ACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISALKAD 65
           +CF  NS + AK++D+ G L +KV+LPV A E+M+E PG+VIS+++ L+R+R + A++A+
Sbjct: 7   SCFVPNSKEMAKIIDARGNL-KKVKLPVTAVEVMIEEPGHVISAMEELKRSRSVVAMRAE 66

Query: 66  DELVGGKIYVLVALGRIGSKVSVVELENLELGC--KNKGKKIGSKVLP-AAAAEEGKEED 125
           DEL+ GK+YVLV +GR+  KV+ +++  +E  C  K + K  G+KV P AA  EEG    
Sbjct: 67  DELLVGKVYVLVPIGRVHCKVTDMDVAIMEAACNGKKRRKSGGAKVSPYAAVVEEGY--- 126

Query: 126 IGSGITGSDQLSCGRGNYKRWNPNLESISE 153
               +       C  G Y+RW P LESISE
Sbjct: 127 ----VQVRAPRGCRLGRYRRWTPVLESISE 148

[Close]

BLAST of CmaCh08G004640 vs. TrEMBL
Match: F6HZ93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01320 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-22
Identity = 72/162 (44.44%), Postives = 102/162 (62.96%), Query Frame = 1


Query: 1   MGCFSACFSLNST--QSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRR 60
           MG +  C S  S+  ++AKL D+ G L  +V++PV AAELMLE PGYV+S VD LRRTRR
Sbjct: 1   MGNYMTCHSFQSSTPKTAKLFDAHGNL-RRVKVPVTAAELMLEEPGYVVSRVDDLRRTRR 60

Query: 61  ISALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKI-GSKVLPAAAAEE 120
           I A++ADD L+ GK Y+++ + R+   VS VE+  +    K + KK  GS+VLPA     
Sbjct: 61  IPAMRADDVLLEGKAYLMMPVSRVHCVVSEVEMALIAAASKKRSKKRGGSRVLPAGNEGT 120

Query: 121 GKEEDIGSGITGSDQLS----CGR---GNYKRWNPNLESISE 153
            +  ++ S + GSD        GR   GN+++W+P LE+ISE
Sbjct: 121 TENLEVQSRVLGSDGGGDVGFFGRHRLGNFRQWSPVLETISE 161

[Close]

BLAST of CmaCh08G004640 vs. TrEMBL
Match: B9RNF9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347410 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 70/166 (42.17%), Postives = 105/166 (63.25%), Query Frame = 1


Query: 1   MGCFSACFSLNST--QSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRR 60
           MG +S+CF ++ +  ++AKL+DS G L  +++LPVKAAELMLE PGYV+S+   L RT R
Sbjct: 1   MGNYSSCFCIHRSNLKTAKLIDSKGTL-RQLKLPVKAAELMLEEPGYVVSAAHELLRTGR 60

Query: 61  ISALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGC----KNKGKKIGSKVLPAAA 120
           + AL+A+DE++  K+Y+ + L R+  K+S  E+  ++        +  KK G+KVLPA A
Sbjct: 61  VIALRAEDEVLARKVYLSLPLCRVNRKISESEMRIIQCAVAVEKMSPKKKSGAKVLPAVA 120

Query: 121 AE-EGKEEDIGSGITG------SDQLSCGRGNYKRWNPNLESISED 154
            E + +EE+I S + G      +D   C   NY+RW P LE I E+
Sbjct: 121 VEVKEEEEEIESEVVGVLEEQDTDFSGCRLANYQRWTPVLEPIFEE 165

[Close]

BLAST of CmaCh08G004640 vs. TrEMBL
Match: A0A0D2PRF7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G143800 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 1


Query: 3   CFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISAL 62
           C S+CF +  +  AK++D+ G L  KV+LPVKAAE+ML+ PG VIS V+ L+RTR +  +
Sbjct: 4   CTSSCF-IQVSDMAKVIDAQGKL-RKVKLPVKAAEIMLDEPGRVISPVEELKRTRCVVPM 63

Query: 63  KADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGK-KIGSKVLPAAAAEEGKEE 122
           +ADDEL+  K YVLV + R+  KV+ V++  +E  C  K + K G+KVLP    EE ++ 
Sbjct: 64  RADDELLAAKAYVLVPIQRVNCKVTDVDVAIIEAACSGKKRAKSGAKVLPELREEE-RQV 123

Query: 123 DIGSGITGSDQLSCGRGNYKRWNPNLESISE 153
           D    + G     C +GNY+ W P LE ISE
Sbjct: 124 DPVLAVPG-----CRKGNYRPWTPVLEPISE 146

[Close]

BLAST of CmaCh08G004640 vs. TAIR10
Match: AT3G03280.1 (AT3G03280.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 1


Query: 1   MGCFSACFSLNSTQS---AKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTR 60
           MG + +C +LN T S   AK++  DGG +  + +P KAAELM+E P Y +     ++  R
Sbjct: 1   MGNYVSC-ALNKTSSSPLAKVILPDGG-VRDIHVPTKAAELMMEMPSYFLVDTKSVKVGR 60

Query: 61  RISALKADDEL-VGG-KIYVLVALGRIGSKVSVVELENLELGCKNKGKKIGSKVLPAAAA 120
           +   L ADD+L +GG  +YV   + R  S  +  ++  L L  K + K  G + +     
Sbjct: 61  KFIPLAADDDLDLGGCHVYVAFPMTRATSAANASDMARLYLTGKKRTKNCGHRRVSPENE 120

Query: 121 EEGKEEDIGSGITGSDQLSCGRGNY-------KRWNPNLESISED 154
           +      IG  +   D        +       K   P LE+I+ED
Sbjct: 121 DNDDVRLIGPKLNLEDIEEFSAAEFIHRISVSKSKKPQLETIAED 163

[Close]

BLAST of CmaCh08G004640 vs. TAIR10
Match: AT5G17350.1 (AT5G17350.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 1


Query: 9   SLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISALKADDEL 68
           S +S+ +AK++  DGG +  +  P+KAAELM+E P + +     L+  R+   L ADD+L
Sbjct: 13  SSSSSSAAKVILPDGG-VRNIHAPMKAAELMMEIPSFFLVDAKSLKIGRKFCPLAADDDL 72

Query: 69  --VGGKIYVLVALGRIGSKVSVVELENLELGCKNKGK-KIGSKVLPAAAAEEGKEEDIGS 128
              G  +YV   + R  S  +  +L  L +  K + + ++GS    AA         +  
Sbjct: 73  QIKGCHVYVAFPMTRATSAANASDLARLFVAAKKQRRHRVGSDHSSAAVKHCHNNGRVSP 132

Query: 129 GITGSDQLSCGRGNYKRWNPNLESISE 153
              G D      G+      NLE I E
Sbjct: 133 DGEGDDVKVISAGS----KLNLEDIEE 154

[Close]

BLAST of CmaCh08G004640 vs. NCBI nr
Match: gi|659101214|ref|XP_008451488.1| (PREDICTED: uncharacterized protein LOC103492762 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 127/165 (76.97%), Postives = 139/165 (84.24%), Query Frame = 1


Query: 1   MGCFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRIS 60
           MGCFSACFS  ST +AKLLD DGGLI KV+LPVKAAELMLE PG+VIS VDVLRRTRRIS
Sbjct: 1   MGCFSACFSSKSTNTAKLLDIDGGLIGKVKLPVKAAELMLESPGHVISPVDVLRRTRRIS 60

Query: 61  ALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKIGSKVLPA---AAAEE 120
           ALKADDELVGGKIYV+VA+GRIGSKVS+ ELEN +L CKN+ KK GSKV PA   AA   
Sbjct: 61  ALKADDELVGGKIYVVVAVGRIGSKVSMAELENFDLTCKNRVKKNGSKVQPAVATAAMVA 120

Query: 121 GKEEDIGSGITGSDQLSCGRGNYKRWNPNLESISEDFCHSFREKH 163
            +EE+IG G+ GSDQL+C RGNYKRWNPNLESI EDF  SFREKH
Sbjct: 121 VEEEEIGGGVCGSDQLNCVRGNYKRWNPNLESIYEDFSLSFREKH 165

[Close]

BLAST of CmaCh08G004640 vs. NCBI nr
Match: gi|778728236|ref|XP_011659392.1| (PREDICTED: uncharacterized protein LOC105436177 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 8.6e-60
Identity = 125/165 (75.76%), Postives = 138/165 (83.64%), Query Frame = 1


Query: 1   MGCFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRIS 60
           MGCFSACFS  ST +AKLLD DGGLI K +LPVKAAELMLE PG+VIS VDVLRRTRRIS
Sbjct: 1   MGCFSACFSSKSTNTAKLLDIDGGLIGKFKLPVKAAELMLESPGHVISPVDVLRRTRRIS 60

Query: 61  ALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKIGSKVLPA---AAAEE 120
           ALKADDEL+GGKIYV+VA+GRIGSKVS+ ELEN +L CKN+ KK GSKV PA   AA   
Sbjct: 61  ALKADDELLGGKIYVVVAVGRIGSKVSMAELENFDLTCKNRVKKNGSKVQPAVATAAMVA 120

Query: 121 GKEEDIGSGITGSDQLSCGRGNYKRWNPNLESISEDFCHSFREKH 163
            +EE+IG G+ GSDQL+C RGNYKRWNPNLESI EDF  SFREKH
Sbjct: 121 EEEEEIGGGVCGSDQLNCVRGNYKRWNPNLESICEDFSLSFREKH 165

[Close]

BLAST of CmaCh08G004640 vs. NCBI nr
Match: gi|763782771|gb|KJB49842.1| (hypothetical protein B456_008G140400 [Gossypium raimondii])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 66/150 (44.00%), Postives = 98/150 (65.33%), Query Frame = 1


Query: 6   ACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISALKAD 65
           +CF  NS + AK++D+ G L +KV+LPV A E+M+E PG+VIS+++ L+R+R + A++A+
Sbjct: 7   SCFVPNSKEMAKIIDARGNL-KKVKLPVTAVEVMIEEPGHVISAMEELKRSRSVVAMRAE 66

Query: 66  DELVGGKIYVLVALGRIGSKVSVVELENLELGC--KNKGKKIGSKVLP-AAAAEEGKEED 125
           DEL+ GK+YVLV +GR+  KV+ +++  +E  C  K + K  G+KV P AA  EEG    
Sbjct: 67  DELLVGKVYVLVPIGRVHCKVTDMDVAIMEAACNGKKRRKSGGAKVSPYAAVVEEGY--- 126

Query: 126 IGSGITGSDQLSCGRGNYKRWNPNLESISE 153
               +       C  G Y+RW P LESISE
Sbjct: 127 ----VQVRAPRGCRLGRYRRWTPVLESISE 148

[Close]

BLAST of CmaCh08G004640 vs. NCBI nr
Match: gi|225437535|ref|XP_002275699.1| (PREDICTED: uncharacterized protein LOC100253802 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 72/162 (44.44%), Postives = 102/162 (62.96%), Query Frame = 1


Query: 1   MGCFSACFSLNST--QSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRR 60
           MG +  C S  S+  ++AKL D+ G L  +V++PV AAELMLE PGYV+S VD LRRTRR
Sbjct: 1   MGNYMTCHSFQSSTPKTAKLFDAHGNL-RRVKVPVTAAELMLEEPGYVVSRVDDLRRTRR 60

Query: 61  ISALKADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGKKI-GSKVLPAAAAEE 120
           I A++ADD L+ GK Y+++ + R+   VS VE+  +    K + KK  GS+VLPA     
Sbjct: 61  IPAMRADDVLLEGKAYLMMPVSRVHCVVSEVEMALIAAASKKRSKKRGGSRVLPAGNEGT 120

Query: 121 GKEEDIGSGITGSDQLS----CGR---GNYKRWNPNLESISE 153
            +  ++ S + GSD        GR   GN+++W+P LE+ISE
Sbjct: 121 TENLEVQSRVLGSDGGGDVGFFGRHRLGNFRQWSPVLETISE 161

[Close]

BLAST of CmaCh08G004640 vs. NCBI nr
Match: gi|823124325|ref|XP_012479561.1| (PREDICTED: uncharacterized protein LOC105794786 [Gossypium raimondii])

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 1


Query: 3   CFSACFSLNSTQSAKLLDSDGGLIEKVRLPVKAAELMLERPGYVISSVDVLRRTRRISAL 62
           C S+CF +  +  AK++D+ G L  KV+LPVKAAE+ML+ PG VIS V+ L+RTR +  +
Sbjct: 4   CTSSCF-IQVSDMAKVIDAQGKL-RKVKLPVKAAEIMLDEPGRVISPVEELKRTRCVVPM 63

Query: 63  KADDELVGGKIYVLVALGRIGSKVSVVELENLELGCKNKGK-KIGSKVLPAAAAEEGKEE 122
           +ADDEL+  K YVLV + R+  KV+ V++  +E  C  K + K G+KVLP    EE ++ 
Sbjct: 64  RADDELLAAKAYVLVPIQRVNCKVTDVDVAIIEAACSGKKRAKSGAKVLPELREEE-RQV 123

Query: 123 DIGSGITGSDQLSCGRGNYKRWNPNLESISE 153
           D    + G     C +GNY+ W P LE ISE
Sbjct: 124 DPVLAVPG-----CRKGNYRPWTPVLEPISE 146

The following BLAST results are available for this feature:

BLAST of CmaCh08G004640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G004640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K830_CUCSA	6.0e-60	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407620 PE=4 SV=1	[more]
A0A0D2PUN5_GOSRA	7.7e-23	44.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G140400 PE=4 SV=1	[more]
F6HZ93_VITVI	1.3e-22	44.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01320 PE=4 SV=...	[more]
B9RNF9_RICCO	1.7e-22	42.17	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347410 PE=4 SV=1	[more]
A0A0D2PRF7_GOSRA	1.7e-22	45.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G143800 PE=4 SV=1	[more]

BLAST of CmaCh08G004640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03280.1	2.1e-08	29.70	unknown protein	[more]
AT5G17350.1	1.2e-06	29.25	unknown protein	[more]

BLAST of CmaCh08G004640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101214\|ref\|XP_008451488.1\|	1.7e-60	76.97	PREDICTED: uncharacterized protein LOC103492762 [Cucumis melo]	[more]
gi\|778728236\|ref\|XP_011659392.1\|	8.6e-60	75.76	PREDICTED: uncharacterized protein LOC105436177 [Cucumis sativus]	[more]
gi\|763782771\|gb\|KJB49842.1\|	1.1e-22	44.00	hypothetical protein B456_008G140400 [Gossypium raimondii]	[more]
gi\|225437535\|ref\|XP_002275699.1\|	1.9e-22	44.44	PREDICTED: uncharacterized protein LOC100253802 [Vitis vinifera]	[more]
gi\|823124325\|ref\|XP_012479561.1\|	2.4e-22	45.03	PREDICTED: uncharacterized protein LOC105794786 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G004640.1	CmaCh08G004640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..152 score: 7.2
None	No IPR available	PANTHER	PTHR33052	FAMILY NOT NAMED	coord: 11..153 score: 1.4
None	No IPR available	PANTHER	PTHR33052:SF1	SUBFAMILY NOT NAMED	coord: 11..153 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G004640	Cla015133	Watermelon (97103) v1	cmawmB856
CmaCh08G004640	Csa7G407620	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G004640	MELO3C015930	Melon (DHL92) v3.5.1	cmameB831
CmaCh08G004640	ClCG09G005160	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G004640	CSPI07G18090	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G004640	CmoCh08G004540	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G004640	Lsi02G024700	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G004640	Cp4.1LG17g07560	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G004640	MELO3C015930.2	Melon (DHL92) v3.6.1	cmamedB930
CmaCh08G004640	CsaV3_7G029910	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G004640	Cla97C09G167610	Watermelon (97103) v2	cmawmbB940
CmaCh08G004640	Bhi09G000685	Wax gourd	cmawgoB1128
CmaCh08G004640	CsGy7G016550	Cucumber (Gy14) v2	cgybcmaB973

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G004640	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh08G004640	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh08G004640	Cucurbita maxima (Rimu)	cmacmaB440
CmaCh08G004640	Cucumber (Gy14) v1	cgycmaB0206
CmaCh08G004640	Cucumber (Gy14) v1	cgycmaB0608
CmaCh08G004640	Cucurbita moschata (Rifu)	cmacmoB879
CmaCh08G004640	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G004640	Cucurbita moschata (Rifu)	cmacmoB905
CmaCh08G004640	Wild cucumber (PI 183967)	cmacpiB913
CmaCh08G004640	Cucumber (Chinese Long) v2	cmacuB894
CmaCh08G004640	Melon (DHL92) v3.5.1	cmameB854
CmaCh08G004640	Watermelon (Charleston Gray)	cmawcgB792
CmaCh08G004640	Watermelon (97103) v1	cmawmB862
CmaCh08G004640	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G004640	Cucurbita pepo (Zucchini)	cmacpeB924
CmaCh08G004640	Bottle gourd (USVL1VR-Ls)	cmalsiB831
CmaCh08G004640	Cucumber (Gy14) v2	cgybcmaB577
CmaCh08G004640	Melon (DHL92) v3.6.1	cmamedB956
CmaCh08G004640	Silver-seed gourd	carcmaB0148
CmaCh08G004640	Silver-seed gourd	carcmaB0628
CmaCh08G004640	Silver-seed gourd	carcmaB1060
CmaCh08G004640	Silver-seed gourd	carcmaB1136
CmaCh08G004640	Cucumber (Chinese Long) v3	cmacucB1062
CmaCh08G004640	Watermelon (97103) v2	cmawmbB910
CmaCh08G004640	Wax gourd	cmawgoB1087