CmaCh08G004380 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGGTTCACATTATCAGAAAAATCCAAGCACACTTGTAACCCTACAACTTGAAGACACTTCATGATGTCCATGGCAAAAGGTTTCAAGCTCTTTCTACGAAGGTGGGTGTCACTTTTGGTGATGCCACTGGTACCGTAAATCAAGATGGTCAATTTTCATTTCGTACTTTTAAACCAGATGACATGCAAGCTCGAGCAGTTGCACCAATTGGAGGTATTTCACAACCACCCTTTTTTACACCAATCGAAGGTAACACACAAGTCCCAGCGGCTGCACCGGTTGGAAGTAGCAATGACATTGATCTTGCTTCTAAGGGTCATGAAATTTCCACCAAGAACAGTGAAAACATTGTTACTATTAATGGTAAAGTGATGTTAAAAACTAAATTGAATCGCTGTTGGTAACAAATTCATTATTTTTGTATTCCTATAAAAAAAAAAAAAAAAAGTCATTCAAATTATATACAAATGAGTTCGGGAAAAGAAATTGGAAGTGGGCTTTGGACTAAATGTCTTTCGTAAGGAATCGGAGGAAGATTCAACGATTTTTTCTAGGAAACCCCTAACGAAAAATAGTAGTTAAAGAGGGTATTTATGTACGTCGTGTTCTTTATATGGAAATTAGAGGCCAATGGGCCATTCTCTTGATTCGTACCGATCAAAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCATGTACCAATTGGTTTGGTAATATCGTTCACATTGCTAGTAGTTGGATGAGTTTTCATAGTCATCCATAGATAGCTCACATTTCTAGGATACTCGAACCTAGCTCCTAGGGCTAATCCACTTTTTAAGAGCACTCAAGTCTTCATTATTGATTGTTGCTCACTCCTAGAAGCATGAAATTCAAGAAAAAGACGGAGTTCATATTGAACACTTAAAGCACGAAATTCATAACCTAATCAATTATGCAAGTTCAAGGAGGAGAAAACATCTATTAATCACTCGAAGCATAATAGCACATCAGAGAGAATTAAAAACATGAATCATAGAAATCTCGAAATTTTCATATTTTTTCATGCATATTCTAACCGTCTAAGATAAGATGTACTCGTATTTGTCTGAGTCACTTTTTCGAGCTTGCTCTTGGTACTCCTAAGCCCTGTGGCCTAAGTGAGCTACCTTGTGGCACATACGTGTGTCACAGTGTGGGCGAACGTGCCAATACGAGTGTCTCGGGCGACTTCCTTTGAAATGAAATTTTCAAGTATAGTACCGGACAACACTGGTGTGCCGGTATTGCGCCCCAGTCCGCATGTTGGAGGTTGCTACATACACCCGCTATCCAACACAGTATCTGTAAATGACACAACATGGGAACGGGAGAGCCAATGTCTCGATAGAACCCGGATGGATGGATGTTCAAGAAGTCTCGATGAGATGAGCGACATGCGGACCTGTTCTCGATGACATGACCGAATGAGTTGTGATGGCCGACGAAACCCTAAGACTCGAGATGGTGTCAAGACATATGAACCATATCAATGAAGATCGAGATGACAAGATGAGATACTTGCAAATGGAGTATAAAAAATGGGACAAAAAACAGATGAATGAGTCGAACAGGCAACTCCGAATAGGGCTAGGTGTATGGTCAATTTAAATGATAATATGACTTTTATGATATAATTCATTTTAAATGTATGCCCAATTTAAGTATTTTATATTATATATTCATTTCTTCCATCTATTGCACACCTAAGAGAAAAAAGTTAATATTAAAGACAAAAATTCAATCCATTTAATAATTACTTTATTCCAAATTTTAAAAATTTAGAAATAGTTTTGAAAATTTTGATGTTATTTTTGGTGCAGTACGAGGATGTTTTTGTTTAA ATGGAGAGGTTTCAAGCTCTTTCTACGAAGGTGGGTGTCACTTTTGGTGATGCCACTGGTACCGTAAATCAAGATGGTCAATTTTCATTTCGTACTTTTAAACCAGATGACATGCAAGCTCGAGCAGTTGCACCAATTGGAGGTATTTCACAACCACCCTTTTTTACACCAATCGAAGGTAACACACAAGTCCCAGCGGCTGCACCGGTTGGAAGTAGCAATGACATTGATCTTGCTTCTAAGGGTCATGAAATTTCCACCAAGAACAGTGAAAACATTGTTACTATTAATGTAGTTAAAGAGGGTATTTATGTACGTCGTGTTCTTTATATGGAAATTAGAGGCCAATGGGCCATTCTCTTGATTCGTACCGATCAAAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCATGTACCAATTGGTTTGTACGAGGATGTTTTTGTTTAA ATGGAGAGGTTTCAAGCTCTTTCTACGAAGGTGGGTGTCACTTTTGGTGATGCCACTGGTACCGTAAATCAAGATGGTCAATTTTCATTTCGTACTTTTAAACCAGATGACATGCAAGCTCGAGCAGTTGCACCAATTGGAGGTATTTCACAACCACCCTTTTTTACACCAATCGAAGGTAACACACAAGTCCCAGCGGCTGCACCGGTTGGAAGTAGCAATGACATTGATCTTGCTTCTAAGGGTCATGAAATTTCCACCAAGAACAGTGAAAACATTGTTACTATTAATGTAGTTAAAGAGGGTATTTATGTACGTCGTGTTCTTTATATGGAAATTAGAGGCCAATGGGCCATTCTCTTGATTCGTACCGATCAAAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCATGTACCAATTGGTTTGTACGAGGATGTTTTTGTTTAA MERFQALSTKVGVTFGDATGTVNQDGQFSFRTFKPDDMQARAVAPIGGISQPPFFTPIEGNTQVPAAAPVGSSNDIDLASKGHEISTKNSENIVTINVVKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLYEDVFV
BLAST of CmaCh08G004380 vs. Swiss-Prot
Match: YCF4_CUCSA (Photosystem I assembly protein Ycf4 OS=Cucumis sativus GN=ycf4 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. Swiss-Prot
Match: YCF4_GOSHI (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum GN=ycf4 PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 7.3e-16 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. Swiss-Prot
Match: YCF4_GOSBA (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense GN=ycf4 PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 7.3e-16 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. Swiss-Prot
Match: YCF4_POPAL (Photosystem I assembly protein Ycf4 OS=Populus alba GN=ycf4 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15 Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1
BLAST of CmaCh08G004380 vs. Swiss-Prot
Match: YCF4_PLAOC (Photosystem I assembly protein Ycf4 OS=Platanus occidentalis GN=ycf4 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TrEMBL
Match: A0A0U3D9D3_9ROSI (Photosystem I assembly protein Ycf4 OS=Aquilaria sinensis GN=ycf4 PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14 Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TrEMBL
Match: A0A125R2Q3_9MAGN (Photosystem I assembly protein Ycf4 OS=Sabia yunnanensis GN=ycf4 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14 Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TrEMBL
Match: A0A0S2IFI3_9ROSI (Photosystem I assembly protein Ycf4 OS=Cucurbita okeechobeensis GN=ycf4 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TrEMBL
Match: A0A0S2IDY3_9ROSI (Photosystem I assembly protein Ycf4 OS=Cucurbita argyrosperma GN=ycf4 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TrEMBL
Match: A0A0S2IEU0_9ROSI (Photosystem I assembly protein Ycf4 OS=Cucurbita ficifolia GN=ycf4 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. TAIR10
Match: ATCG00520.1 (ATCG00520.1 unfolded protein binding) HSP 1 Score: 79.0 bits (193), Expect = 3.0e-15 Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 1
BLAST of CmaCh08G004380 vs. NCBI nr
Match: gi|992331594|ref|YP_009229499.1| (photosystem I assembly protein Ycf4 (chloroplast) [Aquilaria sinensis]) HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14 Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
BLAST of CmaCh08G004380 vs. NCBI nr
Match: gi|1002164583|ref|YP_009234735.1| (photosystem I assembly protein Ycf4 (chloroplast) [Sabia yunnanensis]) HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14 Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
BLAST of CmaCh08G004380 vs. NCBI nr
Match: gi|68164814|ref|YP_247610.1| (photosystem I assembly protein Ycf4 [Cucumis sativus]) HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. NCBI nr
Match: gi|595646801|gb|AHM90238.1| (photosystem I assembly protein ycf4 (chloroplast) [Lagenaria siceraria]) HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
BLAST of CmaCh08G004380 vs. NCBI nr
Match: gi|952954375|gb|ALO21739.1| (Ycf4 (plastid) [Cucurbita argyrosperma]) HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14 Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |