CmaCh08G004350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G004350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNeurofilament heavy polypeptide
LocationCma_Chr08 : 2468602 .. 2469288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTCATTGCTTTGCAATGTTGTGTGAAGGTGGGTGCCACTTTTGACGATGTCACTGGTGAAGAAAGACTCGGTCGTCGATTTTCATTTCGTACTTTTGGAACACATGATACACAAGCCCCATCGGCTGCATCGGTTAGAAGCATTGCTAAAACTCCGAAGGGGGCATCGTCAGTCGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCATCGTCGGTTGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCATCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTACGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTGCATGGTCGGTTGGAAGCGTCACTGAAGCTCCAGAGGGAGCTGCATGGTCGGTCGGAAGTGTCGCTGAAGCCCCAGAGGGAGCTGCGTCGGTCGAAAGCGTCACTAAAACTCCAACCATTGCACCAATTGGGAGTAGCACATAA

mRNA sequence

ATGGCCATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTCATTGCTTTGCAATGTTGTGTGAAGGTGGGTGCCACTTTTGACGATGTCACTGGTGAAGAAAGACTCGGTCGTCGATTTTCATTTCGTACTTTTGGAACACATGATACACAAGCCCCATCGGCTGCATCGGTTAGAAGCATTGCTAAAACTCCGAAGGGGGCATCGTCAGTCGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCATCGTCGGTTGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCATCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTACGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTGCATGGTCGGTTGGAAGCGTCACTGAAGCTCCAGAGGGAGCTGCATGGTCGGTCGGAAGTGTCGCTGAAGCCCCAGAGGGAGCTGCGTCGGTCGAAAGCGTCACTAAAACTCCAACCATTGCACCAATTGGGAGTAGCACATAA

Coding sequence (CDS)

ATGGCCATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTCATTGCTTTGCAATGTTGTGTGAAGGTGGGTGCCACTTTTGACGATGTCACTGGTGAAGAAAGACTCGGTCGTCGATTTTCATTTCGTACTTTTGGAACACATGATACACAAGCCCCATCGGCTGCATCGGTTAGAAGCATTGCTAAAACTCCGAAGGGGGCATCGTCAGTCGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCATCGTCGGTTGGAAGCATCGCTGAAGCCCCGGAGGGGGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGAAAGCATCGCTGAAGCCCCGGAGGGAGCTGCATCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCATCGCTGAAGCCCCGGAGGGAGCTGCGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTACGTCGTCGGTCGGAAGCGTCGCTGAAGCCCCGGAGGGAGCTGCATGGTCGGTTGGAAGCGTCACTGAAGCTCCAGAGGGAGCTGCATGGTCGGTCGGAAGTGTCGCTGAAGCCCCAGAGGGAGCTGCGTCGGTCGAAAGCGTCACTAAAACTCCAACCATTGCACCAATTGGGAGTAGCACATAA

Protein sequence

MAMAKGFKLFHTLFLVIALQCCVKVGATFDDVTGEERLGRRFSFRTFGTHDTQAPSAASVRSIAKTPKGASSVGSIAEAPEGAASSVGSIAEAPEGAASSVESIAEAPEGAASSVESIAEAPEGAASSVGSIAEAPEGAASSVGSIAEAPEGAASSVGSVAEAPEGATSSVGSVAEAPEGAAWSVGSVTEAPEGAAWSVGSVAEAPEGAASVESVTKTPTIAPIGSST
Homology
[Close]
BLAST of CmaCh08G004350 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 3  MAKGFKLFHTLFLVIALQCCVKVGATFDDVTGEER--LGRRFSFRTF-----GTHDTQAP 62
          MA+GFKLF TLFLV A Q CVKV ATF+DVTG     L   FSFR F     GT +T   
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 SAASVRSIAKTPKGASSVG 75
           A++V + A+ P G + VG
Sbjct: 61 LASTVNNHAEAPTGIAPVG 79

[Close]
BLAST of CmaCh08G004350 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 3  MAKGFKLFHTLFLVIALQCCVKVGATFDDVTGEER--LGRRFSFRTF-----GTHDTQAP 62
          MA+GFKLF TLFLV A Q CVKV ATF+DVTG     L   FSFR F     GT +T   
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 63 SAASVRSIAKTPKGASSVG 75
           A++V + A+ P G + VG
Sbjct: 61 LASTVNNHAEAPTGIAPVG 79

[Close]
BLAST of CmaCh08G004350 vs. NCBI nr
Match: gi|1020966598|ref|XP_016159327.1| (PREDICTED: translation initiation factor IF-2-like [Ficedula albicollis])

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 59/173 (34.10%), Postives = 107/173 (61.85%), Query Frame = 1 

Query: 40  RRFSFRTFGTHDTQAPSAASVRSIAKTPKGASSV--GSIAEAPEGAASSVGSIAEAPEGA 99
           RR +    G+ D    SA + +  A  P+G++    GS A+AP+G+A +    A+AP+G+
Sbjct: 134 RRSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGS-ADAPQGSADAPQGSADAPQGS 193

Query: 100 ASSVESIAEAPEGAASSVESIAEAPEGAASSVGSIAEAPEGAASSVGSIAEAPEGAASSV 159
           A + +  A+AP+G+A + +  A+AP+G+A +    A+AP+G+A +    A+AP+G+A + 
Sbjct: 194 ADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAP 253

Query: 160 GSVAEAPEGATSSVGSVAEAPEGAAWSVGSVTEAPEGAAWSVGSVAEAPEGAA 211
              A+AP+G+  +    A+AP+G+A +     +AP+G+A +    A+AP+G+A
Sbjct: 254 QGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSADAPQGSA 305

The following BLAST results are available for this feature:
BLAST of CmaCh08G004350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5J0_CUCSA1.7e-0751.90Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
BLAST of CmaCh08G004350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189732|gb|KGN44965.1|2.4e-0751.90hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|1020966598|ref|XP_016159327.1|4.1e-0734.10PREDICTED: translation initiation factor IF-2-like [Ficedula albicollis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G004350.1CmaCh08G004350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF58104Methyl-accepting chemotaxis protein (MCP) signaling domaincoord: 71..180
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G004350Cla015096Watermelon (97103) v1cmawmB856
CmaCh08G004350ClCG09G005590Watermelon (Charleston Gray)cmawcgB786
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G004350Cucumber (Gy14) v2cgybcmaB577
CmaCh08G004350Cucumber (Gy14) v2cgybcmaB973
CmaCh08G004350Melon (DHL92) v3.6.1cmamedB930
CmaCh08G004350Silver-seed gourdcarcmaB0148
CmaCh08G004350Silver-seed gourdcarcmaB0792
CmaCh08G004350Silver-seed gourdcarcmaB1060
CmaCh08G004350Silver-seed gourdcarcmaB1136
CmaCh08G004350Cucumber (Chinese Long) v3cmacucB1062
CmaCh08G004350Cucumber (Chinese Long) v3cmacucB1084
CmaCh08G004350Watermelon (97103) v2cmawmbB938
CmaCh08G004350Watermelon (97103) v2cmawmbB940
CmaCh08G004350Wax gourdcmawgoB1087
CmaCh08G004350Wax gourdcmawgoB1119
CmaCh08G004350Cucurbita maxima (Rimu)cmacmaB293
CmaCh08G004350Cucurbita maxima (Rimu)cmacmaB382
CmaCh08G004350Cucurbita maxima (Rimu)cmacmaB440
CmaCh08G004350Wild cucumber (PI 183967)cmacpiB934
CmaCh08G004350Cucumber (Gy14) v1cgycmaB0206
CmaCh08G004350Cucumber (Gy14) v1cgycmaB0608
CmaCh08G004350Cucurbita moschata (Rifu)cmacmoB896
CmaCh08G004350Cucurbita moschata (Rifu)cmacmoB905
CmaCh08G004350Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G004350Wild cucumber (PI 183967)cmacpiB913
CmaCh08G004350Cucumber (Chinese Long) v2cmacuB894
CmaCh08G004350Cucumber (Chinese Long) v2cmacuB914
CmaCh08G004350Melon (DHL92) v3.5.1cmameB831
CmaCh08G004350Melon (DHL92) v3.5.1cmameB854
CmaCh08G004350Watermelon (Charleston Gray)cmawcgB783
CmaCh08G004350Watermelon (Charleston Gray)cmawcgB792
CmaCh08G004350Watermelon (97103) v1cmawmB853
CmaCh08G004350Watermelon (97103) v1cmawmB862
CmaCh08G004350Cucurbita pepo (Zucchini)cmacpeB902
CmaCh08G004350Cucurbita pepo (Zucchini)cmacpeB917
CmaCh08G004350Cucurbita pepo (Zucchini)cmacpeB924
CmaCh08G004350Bottle gourd (USVL1VR-Ls)cmalsiB822
CmaCh08G004350Bottle gourd (USVL1VR-Ls)cmalsiB831