CmaCh08G002960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G002960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Delta(9)-fatty-acid desaturase fat-5
Location	Cma_Chr08 : 1693876 .. 1695547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGAAGCTTCAAACTCCCTAAATGGCTCGAGTATTCACTTGCTTATTGTGGAGCTCATGCACTCCAGGTTTGATTTGATTGAATCCTTATTACGACTAAAGCTGAATTTCTCTCGAGAATTCTGAATATCTATTATGTTTTTTAATTTCAGGGTGATCCGATTGATTGGGTGAGTACACACAGATGTCATCATCGATATACTGATTCAGAACGAGACCCACATAGTCCTATATACGGATTTTGGTTTAGTCAAATCACGTGGCTTTTTGATTCATATAATTTGACCAAAAAAGTGTGTCCAAACTATAATACTTCTCAAAAGATTGAAAGAAGCAAGTTTATGTCGTTCATGAAGCATGGATATCCAGACAATGTCAATGACTTGTTGAATGAATCCTTCTATAAGTTCATGCATAGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGGTAAATTACTCTCTTTTTTACCTCTTTTTGGAACCCTTTTTACCAAATATTGTTCGTTTATGTTTTTTCTTAACTATTCGTAGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTAAGATACTTCTCTCCTTAGAGCTGCTCGTTAAACTACTGAGCATAAATGTTTGTTTCAATAGAGAATGAAGAATGGAGTGTACAGAGATTTCTTCTCGGTTATCTAAACGGGGTTGAGGACGGAATTATCCCCTACTCTCAAATTCCCGACCCACCTCACTAAAAGGGAGTGGAGAGAGATTTCTTCTCGATTATCTAAACGAGGTTGAGGACAGAAATTATCCCCTACTCTCAAATTCTCGACCCATCTCACTAGAAGGGAGTGGAGAGAGATTTTTTCTCGATTATCTAAACGGGGCTGAGGACGAAAATTATCCCCTACTCTCAAATTTTCGACCCACCTCACTAGAAGGGAGTGAAGAGAGATTTTTTCCTGGTTATCTAAACAAGGCTGAGGATGGGAACTATCCCCTACACTCAAATTCCTGACCCACCTCATTAGAAGAGAGTGGAGAGAGATTAACTCTCGGTTATCTAAACAGGACTGAGGACGAGATGTATCCCCTACTCTCAAATTCCCGACCCACCTAACTAGAAGGGAGTGGAGAGAGATTTCTTCTCGGCTATCTAAACGGGACTGAGGACGGGAACTAGCCCCTACTCTCAAATTCCCAACCCATCCCACTAGAAGGGAGTGGAGAGAGATTTCTTCTCAGTTATCTAAACAGGGCCGAGGACGGGAGTTATCCCCTACCCTGAAATTCCCGACCCACCTCACATATTGATTATTTCAAATGTTTTTTTAGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAAGATTACAATGATCCTTAAAGATTTGAGAATGTTTATTGAA

mRNA sequence

CATCGAAGCTTCAAACTCCCTAAATGGCTCGAGTATTCACTTGCTTATTGTGGAGCTCATGCACTCCAGGGTGATCCGATTGATTGGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAAGATTACAATGATCCTTAAAGATTTGAGAATGTTTATTGAA

Coding sequence (CDS)

ATGCACTCCAGGGTGATCCGATTGATTGGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAA

Protein sequence

MHSRVIRLIGTYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRNNWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYKQKLPAH

Homology

[Close]

BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY LHPLAL V LY++GG PFI+WGM VR V   HIT +VNS CHVWGKQ WNTGD+S+N
Sbjct: 244 TYILHPLALAVALYAMGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSKN 303

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW VA   FGEGWHNNHHAFE+SARHG EWWQ+D+ WY++KFLQ IGLAT VKLPSE  K
Sbjct: 304 NWWVAALAFGEGWHNNHHAFEFSARHGLEWWQLDMTWYVVKFLQAIGLATDVKLPSEAQK 363

Query: 131 QKL 134
           Q++
Sbjct: 364 QRM 366

[Close]

BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ICO5D_LIMDO (Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-46
Identity = 82/125 (65.60%), Postives = 95/125 (76.00%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY  H LAL+ LLY +GG P+I+WGM  R V   H T  +NSVCH WG +PWNTGD+S N
Sbjct: 229 TYMYHQLALIALLYYVGGFPYIVWGMGFRLVFMFHSTFAINSVCHKWGGRPWNTGDLSTN 288

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           N  VAL  FGEGWHNNHHAFE SARHG EWW+ID+ WY+I+ LQ IGLAT+VKLP+E  K
Sbjct: 289 NMFVALCAFGEGWHNNHHAFEQSARHGLEWWEIDVTWYVIRTLQAIGLATNVKLPTEAQK 348

Query: 131 QKLPA 136
           QKL A
Sbjct: 349 QKLKA 353

[Close]

BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-41
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T  LH +A   L Y  GG P ++WG+ +   + LH+T +VNSVCH+WG + WNT D S+N
Sbjct: 236 TVLLHMMAYSFLFYFCGGMPLLVWGIGITIAVRLHLTFLVNSVCHIWGTRAWNTSDFSKN 295

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSE 128
           NW VA+ T GEGWHNNHHAFE+SARHG EWWQ+D+ W +I+FL+ IGLAT+VKLP+E
Sbjct: 296 NWWVAILTLGEGWHNNHHAFEFSARHGLEWWQLDITWCLIRFLEAIGLATNVKLPTE 352

[Close]

BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-39
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T   H L    LLY  GG  F+ WGM +   +  H+T ++NS+CHVWG + W T D SRN
Sbjct: 179 TVLYHILTFGFLLYYFGGLSFLTWGMGIGVAMEHHVTCLINSLCHVWGSRTWKTNDTSRN 238

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
            W +++F+FGE WHNNHHAFE SAR G EWWQID+ WYI++FL++IGLAT VKLPSE+ +
Sbjct: 239 VWWLSVFSFGESWHNNHHAFESSARQGLEWWQIDISWYIVRFLEIIGLATDVKLPSESQR 298

Query: 131 QKL 134
           +++
Sbjct: 299 RRM 301

[Close]

BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-38
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T   H L L   L+ +GG  F+ WGM V   L +H+T ++NS+CH+WG + W T D SRN
Sbjct: 181 TVLFHILGLGFFLFYLGGMSFVTWGMGVGAALEVHVTCLINSLCHIWGTRTWKTNDTSRN 240

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
            W +++F+FGE WHNNHHAFE SAR G EWWQID+ WYI++F ++IGLAT VK+P+E  +
Sbjct: 241 VWWLSVFSFGESWHNNHHAFESSARQGLEWWQIDISWYIVRFFEIIGLATDVKVPTEAQR 300

Query: 131 QKL 134
           +++
Sbjct: 301 RRM 303

[Close]

BLAST of CmaCh08G002960 vs. TrEMBL
Match: A0A0A0KAB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G376370 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-58
Identity = 104/125 (83.20%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY+IGG PFIIWGM VRFV SLH+TSMVNSVCH+WG QPWNTGD+S+N
Sbjct: 193 TYWLHPLALSLLLYAIGGLPFIIWGMCVRFVYSLHVTSMVNSVCHIWGNQPWNTGDLSKN 252

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VAL TFGEGWHNNHHAFEYSARHGHEWWQID GWY+I+FLQVIGLAT+VKLPSE  K
Sbjct: 253 NWMVALLTFGEGWHNNHHAFEYSARHGHEWWQIDYGWYLIRFLQVIGLATNVKLPSE--K 312

Query: 131 QKLPA 136
           QKL A
Sbjct: 313 QKLAA 315

[Close]

BLAST of CmaCh08G002960 vs. TrEMBL
Match: A0A0A0K8P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G377870 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-58
Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY++GG PFIIWG+ VRFVLSLH TSM+NSVCH+WG QPWNTGD+S+N
Sbjct: 126 TYWLHPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSVCHIWGNQPWNTGDLSKN 185

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VA+FTFGEGWHNNHHAFEYSARHGHEWWQID GWYIIKFLQVIGLAT+VKLPSE  K
Sbjct: 186 NWIVAIFTFGEGWHNNHHAFEYSARHGHEWWQIDNGWYIIKFLQVIGLATNVKLPSE--K 245

Query: 131 QKLPA 136
           QK+ A
Sbjct: 246 QKMAA 248

[Close]

BLAST of CmaCh08G002960 vs. TrEMBL
Match: B9I0S1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15490g PE=3 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50
Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TYFLHP+AL VLLY++GG PF++WGM VR  L+LHIT ++NS  H+WGK+ WNTGD+SRN
Sbjct: 260 TYFLHPIALGVLLYAVGGFPFLVWGMGVRTALALHITWLINSASHLWGKRAWNTGDLSRN 319

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW +AL TFGEGWHNNHHAFEYSARHG EWWQID+ WY+++FLQ IGLAT VKLPSE  K
Sbjct: 320 NWWLALLTFGEGWHNNHHAFEYSARHGLEWWQIDMTWYVVRFLQAIGLATDVKLPSEVQK 379

Query: 131 QKL 134
           Q++
Sbjct: 380 QRM 382

[Close]

BLAST of CmaCh08G002960 vs. TrEMBL
Match: U5FWR1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15500g PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50
Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TYFLHP+AL VLLY++GG PF++WGM VR  L+LHIT ++NS  H+WGK+ WNTGD+SRN
Sbjct: 260 TYFLHPIALGVLLYAVGGFPFLVWGMGVRTALALHITWLINSASHLWGKRAWNTGDLSRN 319

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW +AL TFGEGWHNNHHAFEYSARHG EWWQID+ WY+++FLQ IGLAT VKLPSE  K
Sbjct: 320 NWWLALLTFGEGWHNNHHAFEYSARHGLEWWQIDMTWYVVRFLQAIGLATDVKLPSEVQK 379

Query: 131 QKL 134
           Q++
Sbjct: 380 QRM 382

[Close]

BLAST of CmaCh08G002960 vs. TrEMBL
Match: V4SNN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025838mg PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-50
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1


Query: 8   LIGTYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDM 67
           L  TY LHP+AL  LLY++GG PFI+WGM VR V   HIT +VNS CHVWGKQ WNTGD+
Sbjct: 253 LRSTYILHPIALGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDL 312

Query: 68  SRNNWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSE 127
           SRNNW VAL  FGEGWHNNHHAFEYSARHG EWWQ+DL WY+++FLQ +GLAT VKLPSE
Sbjct: 313 SRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGLATDVKLPSE 372

Query: 128 NYKQKL 134
             KQ++
Sbjct: 373 TQKQRM 378

[Close]

BLAST of CmaCh08G002960 vs. TAIR10
Match: AT3G15850.1 (AT3G15850.1 fatty acid desaturase 5)

HSP 1 Score: 203.8 bits (517), Expect = 7.0e-53
Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY LHPLAL V LY++GG PFI+WGM VR V   HIT +VNS CHVWGKQ WNTGD+S+N
Sbjct: 244 TYILHPLALAVALYAMGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSKN 303

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW VA   FGEGWHNNHHAFE+SARHG EWWQ+D+ WY++KFLQ IGLAT VKLPSE  K
Sbjct: 304 NWWVAALAFGEGWHNNHHAFEFSARHGLEWWQLDMTWYVVKFLQAIGLATDVKLPSEAQK 363

Query: 131 QKL 134
           Q++
Sbjct: 364 QRM 366

[Close]

BLAST of CmaCh08G002960 vs. TAIR10
Match: AT3G15870.1 (AT3G15870.1 Fatty acid desaturase family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-42
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T  LH +A   L Y  GG P ++WG+ +   + LH+T +VNSVCH+WG + WNT D S+N
Sbjct: 236 TVLLHMMAYSFLFYFCGGMPLLVWGIGITIAVRLHLTFLVNSVCHIWGTRAWNTSDFSKN 295

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSE 128
           NW VA+ T GEGWHNNHHAFE+SARHG EWWQ+D+ W +I+FL+ IGLAT+VKLP+E
Sbjct: 296 NWWVAILTLGEGWHNNHHAFEFSARHGLEWWQLDITWCLIRFLEAIGLATNVKLPTE 352

[Close]

BLAST of CmaCh08G002960 vs. TAIR10
Match: AT1G06080.1 (AT1G06080.1 delta 9 desaturase 1)

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-40
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T   H L    LLY  GG  F+ WGM +   +  H+T ++NS+CHVWG + W T D SRN
Sbjct: 179 TVLYHILTFGFLLYYFGGLSFLTWGMGIGVAMEHHVTCLINSLCHVWGSRTWKTNDTSRN 238

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
            W +++F+FGE WHNNHHAFE SAR G EWWQID+ WYI++FL++IGLAT VKLPSE+ +
Sbjct: 239 VWWLSVFSFGESWHNNHHAFESSARQGLEWWQIDISWYIVRFLEIIGLATDVKLPSESQR 298

Query: 131 QKL 134
           +++
Sbjct: 299 RRM 301

[Close]

BLAST of CmaCh08G002960 vs. TAIR10
Match: AT2G31360.1 (AT2G31360.1 16:0delta9 desaturase 2)

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-39
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T   H L L   L+ +GG  F+ WGM V   L +H+T ++NS+CH+WG + W T D SRN
Sbjct: 181 TVLFHILGLGFFLFYLGGMSFVTWGMGVGAALEVHVTCLINSLCHIWGTRTWKTNDTSRN 240

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
            W +++F+FGE WHNNHHAFE SAR G EWWQID+ WYI++F ++IGLAT VK+P+E  +
Sbjct: 241 VWWLSVFSFGESWHNNHHAFESSARQGLEWWQIDISWYIVRFFEIIGLATDVKVPTEAQR 300

Query: 131 QKL 134
           +++
Sbjct: 301 RRM 303

[Close]

BLAST of CmaCh08G002960 vs. TAIR10
Match: AT1G06350.1 (AT1G06350.1 Fatty acid desaturase family protein)

HSP 1 Score: 154.1 bits (388), Expect = 6.3e-38
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           T  +H L    +LY  GG P++  G  V   +  H+T +VNS CH+WG + WNT D SRN
Sbjct: 174 TIAVHILMFWTILYLYGGLPYLTCGGGVGIFIGYHVTWLVNSACHIWGSRSWNTKDTSRN 233

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
            W ++LFT GE WHNNHHAFE SAR G EWWQID+ WY+I+  +V+G+AT VKLPSE  K
Sbjct: 234 VWWLSLFTMGESWHNNHHAFESSARQGLEWWQIDITWYLIRLFEVLGIATDVKLPSELQK 293

Query: 131 QKL 134
           QK+
Sbjct: 294 QKM 296

[Close]

BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|778730379|ref|XP_011659770.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY++GG PFIIWG+ VRFVLSLH TSM+NSVCH+WG QPWNTGD+S+N
Sbjct: 194 TYWLHPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSVCHIWGNQPWNTGDLSKN 253

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VA+FTFGEGWHNNHHAFEYSARHGHEWWQID GWYIIKFLQVIGLAT+VKLPSE  K
Sbjct: 254 NWIVAIFTFGEGWHNNHHAFEYSARHGHEWWQIDNGWYIIKFLQVIGLATNVKLPSE--K 313

Query: 131 QKLPA 136
           QK+ A
Sbjct: 314 QKMAA 316

[Close]

BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|778727442|ref|XP_011659261.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 104/125 (83.20%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY+IGG PFIIWGM VRFV SLH+TSMVNSVCH+WG QPWNTGD+S+N
Sbjct: 193 TYWLHPLALSLLLYAIGGLPFIIWGMCVRFVYSLHVTSMVNSVCHIWGNQPWNTGDLSKN 252

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VAL TFGEGWHNNHHAFEYSARHGHEWWQID GWY+I+FLQVIGLAT+VKLPSE  K
Sbjct: 253 NWMVALLTFGEGWHNNHHAFEYSARHGHEWWQIDYGWYLIRFLQVIGLATNVKLPSE--K 312

Query: 131 QKLPA 136
           QKL A
Sbjct: 313 QKLAA 315

[Close]

BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|659100771|ref|XP_008451258.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 100/120 (83.33%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY+IGG PFIIWGM VRFV+SLH TSM+NSVCH+WG QPWNTGD+S+N
Sbjct: 193 TYWLHPLALSLLLYAIGGLPFIIWGMCVRFVISLHFTSMINSVCHIWGNQPWNTGDLSKN 252

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VA+FTFGEGWHNNHHAFEYSARHGHEWWQID GWYIIKFLQVIG AT+VKLPSE  K
Sbjct: 253 NWIVAIFTFGEGWHNNHHAFEYSARHGHEWWQIDYGWYIIKFLQVIGFATNVKLPSEKQK 312

[Close]

BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|700189514|gb|KGN44747.1| (hypothetical protein Csa_7G377870 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY++GG PFIIWG+ VRFVLSLH TSM+NSVCH+WG QPWNTGD+S+N
Sbjct: 126 TYWLHPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSVCHIWGNQPWNTGDLSKN 185

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VA+FTFGEGWHNNHHAFEYSARHGHEWWQID GWYIIKFLQVIGLAT+VKLPSE  K
Sbjct: 186 NWIVAIFTFGEGWHNNHHAFEYSARHGHEWWQIDNGWYIIKFLQVIGLATNVKLPSE--K 245

Query: 131 QKLPA 136
           QK+ A
Sbjct: 246 QKMAA 248

[Close]

BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|659100773|ref|XP_008451259.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1


Query: 11  TYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRN 70
           TY+LHPLAL +LLY+IGG PFIIWGM VRFV S+H+TSMVNSVCH+WG QPWNTGD+S+N
Sbjct: 195 TYWLHPLALSLLLYAIGGLPFIIWGMCVRFVYSVHVTSMVNSVCHMWGNQPWNTGDLSKN 254

Query: 71  NWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYK 130
           NW+VAL TFGEGWHNNHHAFEYSARHG EWWQID GWY I+FL+VIGLAT+VK PSE  K
Sbjct: 255 NWMVALLTFGEGWHNNHHAFEYSARHGLEWWQIDYGWYFIRFLEVIGLATNVKFPSE--K 314

Query: 131 QKLPA 136
           QKL A
Sbjct: 315 QKLAA 317

The following BLAST results are available for this feature:

BLAST of CmaCh08G002960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADS3_ARATH	1.2e-51	71.54	Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arab...	[more]
ICO5D_LIMDO	3.5e-46	65.60	Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1	[more]
ADS32_ARATH	2.6e-41	58.97	Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3....	[more]
ADS1_ARATH	3.2e-39	54.47	Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1	[more]
ADS2_ARATH	3.5e-38	52.03	Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2	[more]

BLAST of CmaCh08G002960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB1_CUCSA	2.8e-58	83.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G376370 PE=3 SV=1	[more]
A0A0A0K8P8_CUCSA	2.8e-58	82.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G377870 PE=3 SV=1	[more]
B9I0S1_POPTR	1.6e-50	71.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15490g PE=3 SV=2	[more]
U5FWR1_POPTR	1.6e-50	71.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15500g PE=3 SV=1	[more]
V4SNN7_9ROSI	2.8e-50	71.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025838mg PE=3 SV=1	[more]

BLAST of CmaCh08G002960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15850.1	7.0e-53	71.54	fatty acid desaturase 5	[more]
AT3G15870.1	1.5e-42	58.97	Fatty acid desaturase family protein	[more]
AT1G06080.1	1.8e-40	54.47	delta 9 desaturase 1	[more]
AT2G31360.1	2.0e-39	52.03	16:0delta9 desaturase 2	[more]
AT1G06350.1	6.3e-38	54.47	Fatty acid desaturase family protein	[more]

BLAST of CmaCh08G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730379\|ref\|XP_011659770.1\|	4.0e-58	82.40	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|778727442\|ref\|XP_011659261.1\|	4.0e-58	83.20	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|659100771\|ref\|XP_008451258.1\|	4.0e-58	83.33	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|700189514\|gb\|KGN44747.1\|	4.0e-58	82.40	hypothetical protein Csa_7G377870 [Cucumis sativus]	[more]
gi\|659100773\|ref\|XP_008451259.1\|	3.1e-55	80.00	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005804	FA_desaturase_dom
IPR015876	Acyl-CoA_DS

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G002960.1	CmaCh08G002960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005804	Fatty acid desaturase domain	PFAM	PF00487	FA_desaturase	coord: 12..109 score: 4.
IPR015876	Fatty acid desaturase, type 1, core	PRINTS	PR00075	FACDDSATRASE	coord: 80..94 score: 1.3E-7coord: 37..58 score: 1.
None	No IPR available	PANTHER	PTHR11351	ACYL-COA DESATURASE	coord: 11..133 score: 1.4
None	No IPR available	PANTHER	PTHR11351:SF2	DELTA-9 ACYL-LIPID DESATURASE 1-RELATED	coord: 11..133 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G002960	CmoCh08G002940	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G002960	MELO3C015744.2	Melon (DHL92) v3.6.1	cmamedB923
CmaCh08G002960	CsaV3_7G027430	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G002960	Cla97C09G170300	Watermelon (97103) v2	cmawmbB940

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G002960	CmaCh17G012240	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G002960	Wax gourd	cmawgoB1130
CmaCh08G002960	Wax gourd	cmawgoB1134
CmaCh08G002960	Cucurbita maxima (Rimu)	cmacmaB512
CmaCh08G002960	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G002960	Cucumber (Gy14) v1	cgycmaB1079
CmaCh08G002960	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G002960	Melon (DHL92) v3.5.1	cmameB825
CmaCh08G002960	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G002960	Watermelon (97103) v1	cmawmB856
CmaCh08G002960	Cucurbita pepo (Zucchini)	cmacpeB900
CmaCh08G002960	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G002960	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G002960	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G002960	Silver-seed gourd	carcmaB1328