CmaCh08G002890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G002890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr08 : 1665630 .. 1667017 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTGATAGCTTGATCTTGATATCGATTTCAAAAACCCATCTAGAGGTTCTCCATTTTTCTTTGTTTCATCATGAACTTCTAGCTAATGAGCATACTGATTAGAAATCATTCTCGTGACAATGTACATACTCAAACTCGATTGAAATCCGTGTTAATATTTCGCTAAAGCCCCTAACTGAAGTTCTTAGGCTCTTCGTTGCCATAATCCGCTTCCATCAACAATATCAATCGGTGTCGATCGATAACGTGAAAACACTTCTTGACATTGAATTCAAAAATCCGTCTAGAGATTCTCTCCATTCTTCTTTGTTTCATCATGAACTTCTGGCCAATAAACATACCAATTAGAAATCATTCTCATAACAATGCACAACTCAAACCCCATTAGAAATCTATGCTAATATTTCGCCAAAGACCCTTAACTAAAGTTCTTAGGCTCTTCGTTGCTATAATCTACTTCCATCAACAATATCAATCGGTGTCGATTGATATCATGAAAACACTTCTTGATATCAAATTCAAAAACTCGTCTAGAGATTCTTCTCGCTCATTCGTGTTCATCATGAACTTCTAACTAATGAGTACACCGATCAAAAATCATTGCCGTGACAATGGTGAATCAAAATGATTACTAAATCCCACAAATTTAAAAGCCGATAAGTCAAGTAAATTAATCTTTGAGTTCATGAAGTCTTTAACATTGAGCCACTCAAATTGAGAACACCTAGCGTGTATATCATAATCATCATCATCATGAATCAATGCAGAAAAGCATAGATAGCAGTGGAAATATAGACCAAAAGAGCAGAGGAAACCAGAACAACAAGCGCGGCCACAGCATGAACAGCCGATTTACTCCCACAGGACAGCATCCCAAGGCGAATTTGAATGACATTCACCATCGACAGCATCAGGAACAAGCAGCCCATCATGGATCCAAGGGCGGAGGCCAACATCCCAAATCTGAGCACCTTCAAATTGATGTGTGCCCTAAACGCCTCATCCACATCCTTACTGTTCAAAAGGTTAATCGCAAGCTTCAATCCCTGCGCCACAAGAGACGAGAACAGAAAAAAGCTAAACGACACCACCTCAAACACCAGAAGCTTCCGAGCAACATCAATGCCGGCGTCGCAGACCGAGGAATTCTCGAGACTATGCTGCCCTGGCGTCGTCAAGGAAAGCCCTACAAACACCGCGATGGTGAAAAGCGAATTCACATTCACGAGTCCGTCGAGTGTCGTAACGTGGACGCTGGTGGTGGAGGAAGACGACGGCGAGGAGGCGGAGGCGATTCGGAATTCATCGCCTCTTCTCCGGCCATTCTGATTGTCTTTTGGATACGCCTCGGATCTGATCAGAAACAGAGGGAAATGAGATGA

mRNA sequence

ATGTCGGTTGATAGCTTGATCTTGATATCGATTTCAAAAACCCATCTAGAGAAAAGCATAGATAGCAGTGGAAATATAGACCAAAAGAGCAGAGGAAACCAGAACAACAAGCGCGGCCACAGCATGAACAGCCGATTTACTCCCACAGGACAGCATCCCAAGGCGAATTTGAATGACATTCACCATCGACAGCATCAGGAACAAGCAGCCCATCATGGATCCAAGGGCGGAGGCCAACATCCCAAATCTGAGCACCTTCAAATTGATGTGTGCCCTAAACGCCTCATCCACATCCTTACTGTTCAAAAGGTTAATCGCAAGCTTCAATCCCTGCGCCACAAGAGACGAGAACAGAAAAAAGCTAAACGACACCACCTCAAACACCAGAAGCTTCCGAGCAACATCAATGCCGGCGTCGCAGACCGAGGAATTCTCGAGACTATGCTGCCCTGGCGTCGTCAAGGAAAGCCCTACAAACACCGCGATGGTGAAAAGCGAATTCACATTCACGAGTCCGTCGAGTGTCGTAACGTGGACGCTGGTGGTGGAGGAAGACGACGGCGAGGAGGCGGAGGCGATTCGGAATTCATCGCCTCTTCTCCGGCCATTCTGATTGTCTTTTGGATACGCCTCGGATCTGATCAGAAACAGAGGGAAATGAGATGA

Coding sequence (CDS)

ATGTCGGTTGATAGCTTGATCTTGATATCGATTTCAAAAACCCATCTAGAGAAAAGCATAGATAGCAGTGGAAATATAGACCAAAAGAGCAGAGGAAACCAGAACAACAAGCGCGGCCACAGCATGAACAGCCGATTTACTCCCACAGGACAGCATCCCAAGGCGAATTTGAATGACATTCACCATCGACAGCATCAGGAACAAGCAGCCCATCATGGATCCAAGGGCGGAGGCCAACATCCCAAATCTGAGCACCTTCAAATTGATGTGTGCCCTAAACGCCTCATCCACATCCTTACTGTTCAAAAGGTTAATCGCAAGCTTCAATCCCTGCGCCACAAGAGACGAGAACAGAAAAAAGCTAAACGACACCACCTCAAACACCAGAAGCTTCCGAGCAACATCAATGCCGGCGTCGCAGACCGAGGAATTCTCGAGACTATGCTGCCCTGGCGTCGTCAAGGAAAGCCCTACAAACACCGCGATGGTGAAAAGCGAATTCACATTCACGAGTCCGTCGAGTGTCGTAACGTGGACGCTGGTGGTGGAGGAAGACGACGGCGAGGAGGCGGAGGCGATTCGGAATTCATCGCCTCTTCTCCGGCCATTCTGATTGTCTTTTGGATACGCCTCGGATCTGATCAGAAACAGAGGGAAATGAGATGA

Protein sequence

MSVDSLILISISKTHLEKSIDSSGNIDQKSRGNQNNKRGHSMNSRFTPTGQHPKANLNDIHHRQHQEQAAHHGSKGGGQHPKSEHLQIDVCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNINAGVADRGILETMLPWRRQGKPYKHRDGEKRIHIHESVECRNVDAGGGGRRRRGGGGDSEFIASSPAILIVFWIRLGSDQKQREMR

Homology

[Close]

BLAST of CmaCh08G002890 vs. TrEMBL
Match: A0A0L9U5V1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g154200 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-32
Identity = 80/178 (44.94%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 16  LEKSIDSSGNIDQKSRGNQNNKRGHSMNSRFTPTGQHPKANLNDIHHRQHQEQAAHHGSK 75
           + + IDSSG+I  +S  +Q++  G S++      G+H +A+L+D+ H QHQE+AAH G  
Sbjct: 4   VSEGIDSSGDIKHESGRDQDDHGGDSVHGGLATAGEHTEADLDDVDHGQHQEEAAHDGPN 63

Query: 76  GGGQHPKSEHLQIDVCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNI 135
           GG QH + + LQIDV P+ L+ +L V++V R+L+ LRH+R  +++AKRHH + ++L  ++
Sbjct: 64  GGAQHAQPQGLQIDVGPEGLVCVLAVEQVERQLEPLRHQRGPKEEAKRHHFEDEELLGHV 123

Query: 136 NAGVADRGILETMLPWRRQGKPYKHRDGEKRIHIHESVECRNVDA--GGGGRRRRGGG 192
           +AGVA R  L+  LP R +G+P KH DGE+ IH++++V+ R++DA  GGGGRRR   G
Sbjct: 124 DAGVARRTALQAALPRRGEGEPDKHGDGEEGIHVYQAVQGRDMDARGGGGGRRRHPSG 181

[Close]

BLAST of CmaCh08G002890 vs. TrEMBL
Match: A0A151RKV0_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_035454 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-18
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 90  VCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNINAGVADRGILETML 149
           V P+ L+H+L V++V R+LQ LRH+RR+Q++AKRHH +HQ+L  ++ A VA R +L+  L
Sbjct: 1   VGPEGLVHVLAVEQVQRQLQPLRHQRRKQEEAKRHHFEHQQLLRHVQARVARRPVLQAPL 60

Query: 150 PWRRQGKPYKHRDGEKRIHIHESVECRNVDAGGGGRRRRG 190
             RRQ + ++HRD E+R+H+HE V+ R+V A  GGR R G
Sbjct: 61  ARRRQRQAHEHRDREERVHVHEPVQRRHVHARRGGRARGG 100

[Close]

BLAST of CmaCh08G002890 vs. TrEMBL
Match: A0A0A9NZI6_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-08
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 18  KSIDSSGNIDQKSRGNQNNKRGHSMNS-RFTPTGQHPKANLNDIHHRQHQEQAAHHGSKG 77
           + ++   ++  +  G++ N+ G    S       +  + +L+D HH  HQE A   G  G
Sbjct: 73  EGVEDGADVHGERGGDKPNEPGRGFRSGAVAGAPECAEPDLHDHHHGHHQEHAPDDGPHG 132

Query: 78  GGQHPKSEHLQIDVCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNIN 137
           GG+H + EH  +DV   R++ +L V ++ R+LQ LRH+  E+++ + HHL+ Q+ P +  
Sbjct: 133 GGEHAEPEHAGVDVRAHRVVGVLGVDEIQRQLQPLRHQAGEEERREGHHLQDQQRPRHAR 192

Query: 138 AGVADR 143
           AGVA R
Sbjct: 193 AGVAGR 198

[Close]

BLAST of CmaCh08G002890 vs. NCBI nr
Match: gi|920694935|gb|KOM38160.1| (hypothetical protein LR48_Vigan03g154200 [Vigna angularis])

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 80/178 (44.94%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 16  LEKSIDSSGNIDQKSRGNQNNKRGHSMNSRFTPTGQHPKANLNDIHHRQHQEQAAHHGSK 75
           + + IDSSG+I  +S  +Q++  G S++      G+H +A+L+D+ H QHQE+AAH G  
Sbjct: 4   VSEGIDSSGDIKHESGRDQDDHGGDSVHGGLATAGEHTEADLDDVDHGQHQEEAAHDGPN 63

Query: 76  GGGQHPKSEHLQIDVCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNI 135
           GG QH + + LQIDV P+ L+ +L V++V R+L+ LRH+R  +++AKRHH + ++L  ++
Sbjct: 64  GGAQHAQPQGLQIDVGPEGLVCVLAVEQVERQLEPLRHQRGPKEEAKRHHFEDEELLGHV 123

Query: 136 NAGVADRGILETMLPWRRQGKPYKHRDGEKRIHIHESVECRNVDA--GGGGRRRRGGG 192
           +AGVA R  L+  LP R +G+P KH DGE+ IH++++V+ R++DA  GGGGRRR   G
Sbjct: 124 DAGVARRTALQAALPRRGEGEPDKHGDGEEGIHVYQAVQGRDMDARGGGGGRRRHPSG 181

[Close]

BLAST of CmaCh08G002890 vs. NCBI nr
Match: gi|1012331658|gb|KYP43123.1| (hypothetical protein KK1_035454, partial [Cajanus cajan])

HSP 1 Score: 99.4 bits (246), Expect = 8.5e-18
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 90  VCPKRLIHILTVQKVNRKLQSLRHKRREQKKAKRHHLKHQKLPSNINAGVADRGILETML 149
           V P+ L+H+L V++V R+LQ LRH+RR+Q++AKRHH +HQ+L  ++ A VA R +L+  L
Sbjct: 1   VGPEGLVHVLAVEQVQRQLQPLRHQRRKQEEAKRHHFEHQQLLRHVQARVARRPVLQAPL 60

Query: 150 PWRRQGKPYKHRDGEKRIHIHESVECRNVDAGGGGRRRRG 190
             RRQ + ++HRD E+R+H+HE V+ R+V A  GGR R G
Sbjct: 61  ARRRQRQAHEHRDREERVHVHEPVQRRHVHARRGGRARGG 100

The following BLAST results are available for this feature:

BLAST of CmaCh08G002890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G002890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9U5V1_PHAAN	2.5e-32	44.94	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g154200 PE=4 SV=1	[more]
A0A151RKV0_CAJCA	5.9e-18	50.00	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_035454 PE=4 SV=1	[more]
A0A0A9NZI6_ARUDO	3.3e-08	32.54	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of CmaCh08G002890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G002890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920694935\|gb\|KOM38160.1\|	3.6e-32	44.94	hypothetical protein LR48_Vigan03g154200 [Vigna angularis]	[more]
gi\|1012331658\|gb\|KYP43123.1\|	8.5e-18	50.00	hypothetical protein KK1_035454, partial [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G002890.1	CmaCh08G002890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 101..121 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G002890	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G002890	Watermelon (97103) v2	cmawmbB940
CmaCh08G002890	Wax gourd	cmawgoB1130
CmaCh08G002890	Cucurbita maxima (Rimu)	cmacmaB374
CmaCh08G002890	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G002890	Cucumber (Gy14) v1	cgycmaB1079
CmaCh08G002890	Cucurbita moschata (Rifu)	cmacmoB888
CmaCh08G002890	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G002890	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G002890	Melon (DHL92) v3.5.1	cmameB825
CmaCh08G002890	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G002890	Watermelon (97103) v1	cmawmB856
CmaCh08G002890	Cucurbita pepo (Zucchini)	cmacpeB896
CmaCh08G002890	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G002890	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G002890	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G002890	Melon (DHL92) v3.6.1	cmamedB923
CmaCh08G002890	Silver-seed gourd	carcmaB0021
CmaCh08G002890	Silver-seed gourd	carcmaB0112