CmaCh08G002320 (gene) Cucurbita maxima (Rimu)

NameCmaCh08G002320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGenomic DNA, chromosome 3, P1 clone: MJL12
LocationCma_Chr08 : 1295442 .. 1296173 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAAGAAGAAGAAGAATTAGAATTCTCCCCTTCAGCTCAGTTTGTGTCTGAAATCTCCCAATGCTTCTCCTTACTTCTCTCACACCCTCTCTATTTCTCTTATTTCCTGTTCTTCTCCCCTTATCTTCTCAGGCTCCTCTCCTTTGTTTCCCCTCTTTTGGCCACCACATTCCTCTTGATCCTCCAGCCCTTTTTCTCCCATACCCACCAAACCCATTTAGATGACCAAACATTCCCTCTCCCTCAGCATCTTGAGTGGTTCAACACTGTCTTCAACGGACCCACTGGCATCCCCACAAACCCATTTCCACTTCAAGAACCAGAGATCAACAAACAAGAAGCAAAAGAAGAGGATCATGAGGATGAAGAGACTAGAGAAAATGGGATTGAAATGGGTAAGAAGAGCTTTTTGGTGGGGTGTAAAGAGTTCGAAGATGATGAGGATAAAATGGATTTGCTTTGGGAGAAGTATGAGGAGAAGGATGAAAAGAGCTGCAATTTAAAGAAGGATTTGAGGAGTTTGGTGAATCTTCAAAAGGAAATGGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGGGAAAATTTGCTGCTTACAAGCTTTGAAACTTTCGACTGGAAAAATGAGATTTGGAATGGGGAAGAAAAGCGGTTTGAAGAAGATTTCAAAAGCTTTTAAAGGGTTTAAATTGTTGCATCAGCTCGCTACCACTCGTAAGAACAAGACATGA

mRNA sequence

ATGAGTAAAGAAGAAGAAGAATTAGAATTCTCCCCTTCAGCTCAGTTTGTGTCTGAAATCTCCCAATGCTTCTCCTTACTTCTCTCACACCCTCTCTATTTCTCTTATTTCCTGTTCTTCTCCCCTTATCTTCTCAGGCTCCTCTCCTTTGTTTCCCCTCTTTTGGCCACCACATTCCTCTTGATCCTCCAGCCCTTTTTCTCCCATACCCACCAAACCCATTTAGATGACCAAACATTCCCTCTCCCTCAGCATCTTGAGTGGTTCAACACTGTCTTCAACGGACCCACTGGCATCCCCACAAACCCATTTCCACTTCAAGAACCAGAGATCAACAAACAAGAAGCAAAAGAAGAGGATCATGAGGATGAAGAGACTAGAGAAAATGGGATTGAAATGGGTAAGAAGAGCTTTTTGGTGGGGTGTAAAGAGTTCGAAGATGATGAGGATAAAATGGATTTGCTTTGGGAGAAGTATGAGGAGAAGGATGAAAAGAGCTGCAATTTAAAGAAGGATTTGAGGAGTTTGGTGAATCTTCAAAAGGAAATGGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGGGAAAATTTGCTGCTTACAAGCTTTGAAACTTTCGACTGGAAAAATGAGATTTGGAATGGGGAAGAAAAGCGGTTTGAAGAAGATTTCAAAAGCTTTTAAAGGGTTTAAATTGTTGCATCAGCTCGCTACCACTCGTAAGAACAAGACATGA

Coding sequence (CDS)

ATGAGTAAAGAAGAAGAAGAATTAGAATTCTCCCCTTCAGCTCAGTTTGTGTCTGAAATCTCCCAATGCTTCTCCTTACTTCTCTCACACCCTCTCTATTTCTCTTATTTCCTGTTCTTCTCCCCTTATCTTCTCAGGCTCCTCTCCTTTGTTTCCCCTCTTTTGGCCACCACATTCCTCTTGATCCTCCAGCCCTTTTTCTCCCATACCCACCAAACCCATTTAGATGACCAAACATTCCCTCTCCCTCAGCATCTTGAGTGGTTCAACACTGTCTTCAACGGACCCACTGGCATCCCCACAAACCCATTTCCACTTCAAGAACCAGAGATCAACAAACAAGAAGCAAAAGAAGAGGATCATGAGGATGAAGAGACTAGAGAAAATGGGATTGAAATGGGTAAGAAGAGCTTTTTGGTGGGGTGTAAAGAGTTCGAAGATGATGAGGATAAAATGGATTTGCTTTGGGAGAAGTATGAGGAGAAGGATGAAAAGAGCTGCAATTTAAAGAAGGATTTGAGGAGTTTGGTGAATCTTCAAAAGGAAATGGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGGGAAAATTTGCTGCTTACAAGCTTTGAAACTTTCGACTGGAAAAATGAGATTTGGAATGGGGAAGAAAAGCGGTTTGAAGAAGATTTCAAAAGCTTTTAAAGGGTTTAAATTGTTGCATCAGCTCGCTACCACTCGTAAGAACAAGACATGA

Protein sequence

MSKEEEELEFSPSAQFVSEISQCFSLLLSHPLYFSYFLFFSPYLLRLLSFVSPLLATTFLLILQPFFSHTHQTHLDDQTFPLPQHLEWFNTVFNGPTGIPTNPFPLQEPEINKQEAKEEDHEDEETRENGIEMGKKSFLVGCKEFEDDEDKMDLLWEKYEEKDEKSCNLKKDLRSLVNLQKEMEEEEEEEEETGKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQLATTRKNKT
BLAST of CmaCh08G002320 vs. TrEMBL
Match: A0A0A0K4L5_CUCSA (Genomic DNA, chromosome 3, P1 clone: MJL12 OS=Cucumis sativus GN=Csa_7G352430 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.6e-56
Identity = 159/283 (56.18%), Postives = 185/283 (65.37%), Query Frame = 1

Query: 1   MSKEEEELEFSPSAQFVSEISQCFSLLLSHPLYFSYFLFFSPYLLRLLSFVSPLLATTFL 60
           MS EEE+L  SPS+ F+S+ISQ  SL++SHPLYFSYFLFFSPY+L++LSF SPLL+ TFL
Sbjct: 1   MSTEEEKL--SPSSIFLSQISQFCSLIISHPLYFSYFLFFSPYILKVLSFFSPLLSVTFL 60

Query: 61  LILQPF----FSHTHQTHLDDQTFPLPQHLEWFNTVFNGPTGIPTNPFPL----QEPEIN 120
           L+L PF    FSH+HQ    DQ F L    EW+N  FN         FPL    QEPEI 
Sbjct: 61  LLLLPFLFTFFSHSHQNQDHDQLFLLD---EWYNNFFN------IIQFPLLEEAQEPEIK 120

Query: 121 KQEAKEE--DHEDE--ETRENGI---------EMGKKSFLVG----CKEFEDDEDKMDLL 180
           K+  +EE  D  D   +  ENGI         ++G    +V     CK FED+E KMDLL
Sbjct: 121 KEINQEETKDRHDHHCDIIENGISTRNISKEEKVGTNCSIVKSVMECKVFEDEE-KMDLL 180

Query: 181 WEKYEEKD------------EKSCNLKKDLRSLVNLQKEMEE---EEEEEEETGKICCLQ 240
           WEKYE+K+             +  + KKDLRSLVN QKEMEE   +EEEEEE GKICCLQ
Sbjct: 181 WEKYEDKELVVVIKEEVNKKNRCISKKKDLRSLVNQQKEMEELEDQEEEEEENGKICCLQ 240

Query: 241 ALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQLATTRKNKT 244
           ALK ST KMRFGMGKK+GLKKISKAFKG K LHQL T  KNKT
Sbjct: 241 ALKFSTSKMRFGMGKKNGLKKISKAFKGLKFLHQLTTNGKNKT 271

BLAST of CmaCh08G002320 vs. TrEMBL
Match: V7B544_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G132000g PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEK---SCNLKKDLRSLVNLQKEMEEEEEEEE 199
           + CK FE     D  + MD+LWE YE +  K     N KK  +  +   ++ EEEEEEE+
Sbjct: 366 LACKLFEERHNADGSEGMDMLWETYETESNKVLQKSNTKKGKKGEIEKSEDEEEEEEEED 425

Query: 200 ETGKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGF 230
             GK+CCLQALK STGKM  GMG+ + L K SKA KGF
Sbjct: 426 MEGKLCCLQALKFSTGKMNLGMGRPN-LLKFSKALKGF 462

BLAST of CmaCh08G002320 vs. TrEMBL
Match: A0A151SNF1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_002604 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEK---SCNLKKDLRSLVNLQKEMEEEEEEEE 199
           + CK FE     D  + MD+LWE YE +  K     + KK  +S V  + E +EEEEEE+
Sbjct: 323 LACKLFEERHNADGSEGMDMLWETYETESNKVMKKSSTKKGKKSEV--ESEEDEEEEEED 382

Query: 200 ETGKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQL 236
             GK+CCLQALK STGKM  GMG+ + L K SKA KG   LH +
Sbjct: 383 MEGKLCCLQALKFSTGKMNLGMGRPN-LLKFSKALKGIGWLHHV 423

BLAST of CmaCh08G002320 vs. TrEMBL
Match: A0A0S3RUQ4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G163100 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEKSCNLKKDLRSLVN-LQKEMEEEEEEEEET 199
           + CK FE     D  + MD+LWE YE +  K     K  +     ++K  +EEEEEE+  
Sbjct: 356 LACKLFEERHNADGSEGMDMLWETYETESNKVLQKSKTKKGKKGEVEKNEDEEEEEEDME 415

Query: 200 GKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQL 236
           GK+CCLQALK STGKM  GMG+ + L K SKA KG   LH +
Sbjct: 416 GKLCCLQALKFSTGKMNLGMGRPN-LLKFSKAIKGIGWLHHV 456

BLAST of CmaCh08G002320 vs. TrEMBL
Match: A0A0L9U4X9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g122700 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEKSCNLKKDLRSLVN-LQKEMEEEEEEEEET 199
           + CK FE     D  + MD+LWE YE +  K     K  +     ++K  +EEEEEE+  
Sbjct: 356 LACKLFEERHNADGSEGMDMLWETYETESNKVLQKSKTKKGKKGEVEKNEDEEEEEEDME 415

Query: 200 GKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQL 236
           GK+CCLQALK STGKM  GMG+ + L K SKA KG   LH +
Sbjct: 416 GKLCCLQALKFSTGKMNLGMGRPN-LLKFSKAIKGIGWLHHV 456

BLAST of CmaCh08G002320 vs. TAIR10
Match: AT3G25130.1 (AT3G25130.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1

Query: 13 SAQFVSEISQCFSLLLSHPLYFSYFLFFSPYLLRLLSFVSPLLATTFLLILQPFFS-HTH 72
          S+  +S+     S +L+HP YFSY LFFSPY+ ++LSF+SPL  TT LL+L    + H  
Sbjct: 21 SSLLLSDFHLFCSFILTHPFYFSYLLFFSPYIFKILSFLSPLFVTTTLLLLALLSTLHVQ 80

Query: 73 QTHLDDQT 80
           T LD ++
Sbjct: 81 DTCLDSES 88

BLAST of CmaCh08G002320 vs. NCBI nr
Match: gi|700189397|gb|KGN44630.1| (Genomic DNA, chromosome 3, P1 clone: MJL12 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 6.6e-56
Identity = 159/283 (56.18%), Postives = 185/283 (65.37%), Query Frame = 1

Query: 1   MSKEEEELEFSPSAQFVSEISQCFSLLLSHPLYFSYFLFFSPYLLRLLSFVSPLLATTFL 60
           MS EEE+L  SPS+ F+S+ISQ  SL++SHPLYFSYFLFFSPY+L++LSF SPLL+ TFL
Sbjct: 1   MSTEEEKL--SPSSIFLSQISQFCSLIISHPLYFSYFLFFSPYILKVLSFFSPLLSVTFL 60

Query: 61  LILQPF----FSHTHQTHLDDQTFPLPQHLEWFNTVFNGPTGIPTNPFPL----QEPEIN 120
           L+L PF    FSH+HQ    DQ F L    EW+N  FN         FPL    QEPEI 
Sbjct: 61  LLLLPFLFTFFSHSHQNQDHDQLFLLD---EWYNNFFN------IIQFPLLEEAQEPEIK 120

Query: 121 KQEAKEE--DHEDE--ETRENGI---------EMGKKSFLVG----CKEFEDDEDKMDLL 180
           K+  +EE  D  D   +  ENGI         ++G    +V     CK FED+E KMDLL
Sbjct: 121 KEINQEETKDRHDHHCDIIENGISTRNISKEEKVGTNCSIVKSVMECKVFEDEE-KMDLL 180

Query: 181 WEKYEEKD------------EKSCNLKKDLRSLVNLQKEMEE---EEEEEEETGKICCLQ 240
           WEKYE+K+             +  + KKDLRSLVN QKEMEE   +EEEEEE GKICCLQ
Sbjct: 181 WEKYEDKELVVVIKEEVNKKNRCISKKKDLRSLVNQQKEMEELEDQEEEEEENGKICCLQ 240

Query: 241 ALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQLATTRKNKT 244
           ALK ST KMRFGMGKK+GLKKISKAFKG K LHQL T  KNKT
Sbjct: 241 ALKFSTSKMRFGMGKKNGLKKISKAFKGLKFLHQLTTNGKNKT 271

BLAST of CmaCh08G002320 vs. NCBI nr
Match: gi|593457673|ref|XP_007140671.1| (hypothetical protein PHAVU_008G132000g [Phaseolus vulgaris])

HSP 1 Score: 77.0 bits (188), Expect = 5.0e-11
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEK---SCNLKKDLRSLVNLQKEMEEEEEEEE 199
           + CK FE     D  + MD+LWE YE +  K     N KK  +  +   ++ EEEEEEE+
Sbjct: 366 LACKLFEERHNADGSEGMDMLWETYETESNKVLQKSNTKKGKKGEIEKSEDEEEEEEEED 425

Query: 200 ETGKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGF 230
             GK+CCLQALK STGKM  GMG+ + L K SKA KGF
Sbjct: 426 MEGKLCCLQALKFSTGKMNLGMGRPN-LLKFSKALKGF 462

BLAST of CmaCh08G002320 vs. NCBI nr
Match: gi|695053995|ref|XP_009415111.1| (PREDICTED: uncharacterized protein LOC103996038 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 76.3 bits (186), Expect = 8.5e-11
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1

Query: 142 CKEFEDDE--DKMDLLWEKYEEKDEKSCNLKKDLRSL-VNLQKEMEEEEEEEEE-----T 201
           CKE +  E  ++MDLLWE YE    ++   KK+ ++  V L++E EEEE EE+E     T
Sbjct: 269 CKERKVAEGGEEMDLLWEAYEANASETDTKKKEKKARRVELEEEEEEEEAEEDEEEEATT 328

Query: 202 GKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLH 234
           G++CCLQALKLS GKM  GMGK++ L KISK  KG ++ H
Sbjct: 329 GQLCCLQALKLSAGKMNLGMGKRN-LMKISKVLKGMRMFH 367

BLAST of CmaCh08G002320 vs. NCBI nr
Match: gi|950957825|ref|XP_014497135.1| (PREDICTED: uncharacterized protein LOC106758690 [Vigna radiata var. radiata])

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-10
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEKSCNLKKDLRSLVN-LQKEMEEEEEEEEET 199
           + CK FE     D  + MD+LWE YE +  K     K  +     ++K  EEEEEEE+  
Sbjct: 348 LACKLFEERHNADGSEGMDMLWETYETESNKVLQKSKTKKGKKGEVEKNEEEEEEEEDME 407

Query: 200 GKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQL 236
           GK+CCLQALK STGKM  GMG+ + L K SKA KG   LH +
Sbjct: 408 GKLCCLQALKFSTGKMNLGMGRPN-LLKFSKAIKGIGWLHHV 448

BLAST of CmaCh08G002320 vs. NCBI nr
Match: gi|1012345174|gb|KYP56366.1| (hypothetical protein KK1_002604 [Cajanus cajan])

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 140 VGCKEFE-----DDEDKMDLLWEKYEEKDEK---SCNLKKDLRSLVNLQKEMEEEEEEEE 199
           + CK FE     D  + MD+LWE YE +  K     + KK  +S V  + E +EEEEEE+
Sbjct: 323 LACKLFEERHNADGSEGMDMLWETYETESNKVMKKSSTKKGKKSEV--ESEEDEEEEEED 382

Query: 200 ETGKICCLQALKLSTGKMRFGMGKKSGLKKISKAFKGFKLLHQL 236
             GK+CCLQALK STGKM  GMG+ + L K SKA KG   LH +
Sbjct: 383 MEGKLCCLQALKFSTGKMNLGMGRPN-LLKFSKALKGIGWLHHV 423

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4L5_CUCSA4.6e-5656.18Genomic DNA, chromosome 3, P1 clone: MJL12 OS=Cucumis sativus GN=Csa_7G352430 PE... [more]
V7B544_PHAVU3.5e-1148.98Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G132000g PE=4 SV=1[more]
A0A151SNF1_CAJCA2.9e-1048.08Uncharacterized protein OS=Cajanus cajan GN=KK1_002604 PE=4 SV=1[more]
A0A0S3RUQ4_PHAAN5.0e-1046.08Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G163100 PE=... [more]
A0A0L9U4X9_PHAAN5.0e-1046.08Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g122700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G25130.12.1e-0745.59 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700189397|gb|KGN44630.1|6.6e-5656.18Genomic DNA, chromosome 3, P1 clone: MJL12 [Cucumis sativus][more]
gi|593457673|ref|XP_007140671.1|5.0e-1148.98hypothetical protein PHAVU_008G132000g [Phaseolus vulgaris][more]
gi|695053995|ref|XP_009415111.1|8.5e-1150.00PREDICTED: uncharacterized protein LOC103996038 [Musa acuminata subsp. malaccens... [more]
gi|950957825|ref|XP_014497135.1|3.2e-1047.06PREDICTED: uncharacterized protein LOC106758690 [Vigna radiata var. radiata][more]
gi|1012345174|gb|KYP56366.1|4.2e-1048.08hypothetical protein KK1_002604 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G002320.1CmaCh08G002320.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 169..196
scor
NoneNo IPR availablePANTHERPTHR36760FAMILY NOT NAMEDcoord: 146..242
score: 5.6
NoneNo IPR availablePANTHERPTHR36760:SF1GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJL12coord: 146..242
score: 5.6