CmaCh08G001980 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G001980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Amaranthin-like lectin
Location	Cma_Chr08 : 1107224 .. 1108412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACGTTGGTCTTGGTTTTAACATAGTCGTATGGAGAATTGGTCCTCCTTATGGTCGGTTGCTAATAGAGATCTCTGCGATCTCAGTATAGTTATTAACTGGAAATTAGTGTGGTCATTACCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGCTCGCTCAATTGACAATCGTCCATATCTACAATTTTCTTCCAACAATATTGACGATCCTACCATTCAGATGGAGACTTTCATCACAAATGATGGAAAATTTTGCATCAAATCAGTTTACTTCCAGAAATTTTGAAGACGTGACACATCTAATTAGATTTTTGCTGACTATTATGAGACCACTACTCAAAATCTCGATACTTTATTTTTGCCCACTAAAGTTTCACCCGACGTTGTTGCTCTTTGTAACTTGGGTAATGACAACTTTGTTAAAAGATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

mRNA sequence

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

Coding sequence (CDS)

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

Protein sequence

MVQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCCYNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVYDSSRNHFDFVTYTIGSKISYLMAAVKNIDEFSRLHMVELVLSRQINNVVFCLFDARIHDQVVIVLATTEVANNSNIPNTESVTFSYTNNGLSTWASLVSTKLDIKITVEAEIPLIVDGKMIETSSTMFVGEYTWGKTITTSKDSRDI

Homology

[Close]

BLAST of CmaCh08G001980 vs. TrEMBL
Match: A0A0A0K956_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.3e-36
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 1   MVQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFH 60
           MV  P+F  LKSKYN+ YL Y++E  S V  FLRYSG EILTP+TK EFEQA+ DPS +H
Sbjct: 1   MVYLPKFAALKSKYNNKYLCYVNEKSSTVRTFLRYSGDEILTPFTKLEFEQAQSDPSSYH 60

Query: 61  IRCCYNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVYDSSRNHFDFVTYTIGSK 120
           I+CCYNNKY  S + D H+IVAGA +K+EDKSKW+CTLF P YD+    F F    +GS 
Sbjct: 61  IKCCYNNKYLVSASSDHHYIVAGADQKQEDKSKWTCTLFRPAYDNYHQSFQFSHVFLGSH 120

Query: 121 I 122
           +
Sbjct: 121 V 121

[Close]

BLAST of CmaCh08G001980 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.4e-29
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN+ YLRY+ E   Q++ FL++SG+E++TPY+K++ E AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNNKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVEMAKNGKGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PVY
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVY 101

[Close]

BLAST of CmaCh08G001980 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-28
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN+ YLRY+ E   Q++ FL++SG+E++TPY+K++ E+AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNNKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVERAKNGGGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PV+
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVH 101

[Close]

BLAST of CmaCh08G001980 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-28
Identity = 58/99 (58.59%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN  YLRY+ E   Q++ FL++SG+E++TPY+K++ E+AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNDKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVERAKNGKGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PV+
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVH 101

[Close]

BLAST of CmaCh08G001980 vs. TrEMBL
Match: A5AYS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = 1


Query: 2   VQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHI 61
           ++ PR+VV KSKYN+  LRY+ E   +++ FL++SG+E++TPY+K+  E AK    L HI
Sbjct: 1   MELPRYVVFKSKYNNKXLRYIHED-GEIHGFLQFSGEEVMTPYSKYHVEMAKNGKGLVHI 60

Query: 62  RCCYNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           RCCYNNKYW  W+ +  +IVAGA E +ED+S W+CTLF PVY
Sbjct: 61  RCCYNNKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVY 101

[Close]

BLAST of CmaCh08G001980 vs. NCBI nr
Match: gi|449454680|ref|XP_004145082.1| (PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 1   MVQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFH 60
           MV  P+F  LKSKYN+ YL Y++E  S V  FLRYSG EILTP+TK EFEQA+ DPS +H
Sbjct: 1   MVYLPKFAALKSKYNNKYLCYVNEKSSTVRTFLRYSGDEILTPFTKLEFEQAQSDPSSYH 60

Query: 61  IRCCYNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVYDSSRNHFDFVTYTIGSK 120
           I+CCYNNKY  S + D H+IVAGA +K+EDKSKW+CTLF P YD+    F F    +GS 
Sbjct: 61  IKCCYNNKYLVSASSDHHYIVAGADQKQEDKSKWTCTLFRPAYDNYHQSFQFSHVFLGSH 120

Query: 121 I 122
           +
Sbjct: 121 V 121

[Close]

BLAST of CmaCh08G001980 vs. NCBI nr
Match: gi|659120444|ref|XP_008460197.1| (PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 72/122 (59.02%), Postives = 89/122 (72.95%), Query Frame = 1


Query: 1   MVQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFH 60
           MV  P+F  LKSKYN+ YLRY++E  S V  FL+YSG EILTP+TKFEFE+A  DPS +H
Sbjct: 1   MVYLPKFAALKSKYNNKYLRYVNEKSSPVRTFLQYSGDEILTPFTKFEFEKAHSDPSSYH 60

Query: 61  IRCCYNNKYWTS-WACDKHFIVAGAYEKEEDKSKWSCTLFHPVYDSSRNHFDFVTYTIGS 120
           I+CCYNNKY  S  + D H+IVAGA +K+EDKSKW+CTLF P YD+    F F    +GS
Sbjct: 61  IKCCYNNKYLVSASSSDHHYIVAGADQKQEDKSKWTCTLFRPTYDNYHQSFRFSHVYLGS 120

Query: 121 KI 122
            +
Sbjct: 121 HV 122

[Close]

BLAST of CmaCh08G001980 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN+ YLRY+ E   Q++ FL++SG+E++TPY+K++ E AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNNKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVEMAKNGKGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PVY
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVY 101

[Close]

BLAST of CmaCh08G001980 vs. NCBI nr
Match: gi|297744329|emb|CBI37299.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN+ YLRY+ E   Q++ FL++SG+E++TPY+K++ E AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNNKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVEMAKNGKGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PVY
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVY 101

[Close]

BLAST of CmaCh08G001980 vs. NCBI nr
Match: gi|225465425|ref|XP_002264858.1| (PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera])

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-28
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 5   PRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCC 64
           PR+VVLKSKYN+ YLRY+ E   Q++ FL++SG+E++TPY+K++ E+AK    L HIRCC
Sbjct: 4   PRYVVLKSKYNNKYLRYIHEDV-QIHGFLQFSGEEVVTPYSKYQVERAKNGGGLVHIRCC 63

Query: 65  YNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVY 104
           YNNKYW  W+ +  +IVAGA E +ED+S WSCTLF PV+
Sbjct: 64  YNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVH 101

The following BLAST results are available for this feature:

BLAST of CmaCh08G001980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G001980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K956_CUCSA	9.3e-36	59.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1	[more]
F6HZZ7_VITVI	8.4e-29	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=...	[more]
F6HZZ6_VITVI	3.2e-28	58.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=...	[more]
D7U3H5_VITVI	4.2e-28	58.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=...	[more]
A5AYS3_VITVI	1.3e-26	53.92	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1	[more]

BLAST of CmaCh08G001980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G001980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454680\|ref\|XP_004145082.1\|	1.3e-35	59.50	PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus]	[more]
gi\|659120444\|ref\|XP_008460197.1\|	1.9e-34	59.02	PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo]	[more]
gi\|225465427\|ref\|XP_002264911.1\|	1.2e-28	59.60	PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera]	[more]
gi\|297744329\|emb\|CBI37299.3\|	1.2e-28	59.60	unnamed protein product [Vitis vinifera]	[more]
gi\|225465425\|ref\|XP_002264858.1\|	4.6e-28	58.59	PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008998	Agglutinin
IPR023307	Aerolysin-like toxin, beta complex domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001980.1	CmaCh08G001980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008998	Agglutinin domain	PFAM	PF07468	Agglutinin	coord: 3..135 score: 6.1
IPR008998	Agglutinin domain	SMART	SM00791	agglutinin	coord: 2..141 score: 1.3
IPR008998	Agglutinin domain	unknown	SSF50382	Agglutinin	coord: 3..140 score: 2.09
IPR023307	Aerolysin-like toxin, beta complex domain	GENE3D	G3DSA:2.170.15.10		coord: 151..245 score: 7.3
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 3..150 score: 1.3
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 1..105 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G001980	Cucumber (Gy14) v2	cgybcmaB876
CmaCh08G001980	Melon (DHL92) v3.6.1	cmamedB918
CmaCh08G001980	Silver-seed gourd	carcmaB0112
CmaCh08G001980	Cucumber (Chinese Long) v3	cmacucB1077
CmaCh08G001980	Watermelon (97103) v2	cmawmbB925
CmaCh08G001980	Wax gourd	cmawgoB1092
CmaCh08G001980	Cucurbita maxima (Rimu)	cmacmaB389
CmaCh08G001980	Cucumber (Gy14) v1	cgycmaB1012
CmaCh08G001980	Cucurbita moschata (Rifu)	cmacmoB903
CmaCh08G001980	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G001980	Wild cucumber (PI 183967)	cmacpiB928
CmaCh08G001980	Cucumber (Chinese Long) v2	cmacuB908
CmaCh08G001980	Melon (DHL92) v3.5.1	cmameB820
CmaCh08G001980	Watermelon (Charleston Gray)	cmawcgB808
CmaCh08G001980	Watermelon (97103) v1	cmawmB883
CmaCh08G001980	Cucurbita pepo (Zucchini)	cmacpeB910
CmaCh08G001980	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G001980	Bottle gourd (USVL1VR-Ls)	cmalsiB815