CmaCh08G001950 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G001950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAmaranthin-like lectin
LocationCma_Chr08 : 1099994 .. 1100398 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGACTTCCCAAGTTTGGAGTACTCAAATCGAAGTGCAACCACAACTACAATATTCAGGACGGTCCATTCACAAAGTTCGAGTTCGAGCAAGCTAAATCTGACCCATCTTTATTCCATATAAAATGTTGTTAAAACAATAGGTACTGGGTTAGTTGGGCTGGTGACCATCAATTTATTATAGCTGGAGCTGAAGATAAAGAGGAAGATAGATCCAAATGGACATGCACGTTATTTCGTCCCGTTTATGATAGTTGTCATCAATCCTATCGATTTCATCATGTCCATCTTGGTCTCTATGTGGTGTTGTGGAGAGATGGTTCTCATTTTAGAGATTGCTTACGTCCACACTTGTCAAACCCCGATAGACACCTTTGTGATCTCAGTATAGCTATCGATTGA

mRNA sequence

ATGGTGGGACTTCCCAAGTTTGGAGTACTCAAATCGAAGTGCAACCACAACTACAATATTCAGGACGGTCCATTCACAAAGTACTGGGTTAGTTGGGCTGGTGACCATCAATTTATTATAGCTGGAGCTGAAGATAAAGAGGAAGATAGATCCAAATGGACATGCACGTTATTTCGTCCCGTTTATGATAGTTGTCATCAATCCTATCGATTTCATCATGTCCATCTTGGTCTCTATGTGGTGTTGTGGAGAGATGGTTCTCATTTTAGAGATTGCTTACGTCCACACTTGTCAAACCCCGATAGACACCTTTGTGATCTCAGTATAGCTATCGATTGA

Coding sequence (CDS)

ATGGTGGGACTTCCCAAGTTTGGAGTACTCAAATCGAAGTGCAACCACAACTACAATATTCAGGACGGTCCATTCACAAAGTACTGGGTTAGTTGGGCTGGTGACCATCAATTTATTATAGCTGGAGCTGAAGATAAAGAGGAAGATAGATCCAAATGGACATGCACGTTATTTCGTCCCGTTTATGATAGTTGTCATCAATCCTATCGATTTCATCATGTCCATCTTGGTCTCTATGTGGTGTTGTGGAGAGATGGTTCTCATTTTAGAGATTGCTTACGTCCACACTTGTCAAACCCCGATAGACACCTTTGTGATCTCAGTATAGCTATCGATTGA

Protein sequence

MVGLPKFGVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVYDSCHQSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID
Homology
[Close]
BLAST of CmaCh08G001950 vs. TrEMBL
Match: A0A0A0K956_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-22
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 17  NYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVYDSCHQSYRFHHVHL 76
           +Y+I+     KY VS + DH +I+AGA+ K+ED+SKWTCTLFRP YD+ HQS++F HV L
Sbjct: 58  SYHIKCCYNNKYLVSASSDHHYIVAGADQKQEDKSKWTCTLFRPAYDNYHQSFQFSHVFL 117

Query: 77  GLYVVLWRDGSHFRDCLRPHLSNPDR-HLCDLSIAID 113
           G +VVLWR  + + +CLR   S+P   HL DL++ I+
Sbjct: 118 GSHVVLWRSTAPYGECLRAQSSDPTTDHLSDLNMVIN 154

[Close]
BLAST of CmaCh08G001950 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-17
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S W+CTLF PVY D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVYVDGDA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ +F HV LG Y  LWR    +  CL    ++PD  LCD+   ID
Sbjct: 115 QTLQFRHVQLGHYACLWRLPPPYGSCLFAGSTSPDNDLCDVCTIID 152

[Close]
BLAST of CmaCh08G001950 vs. TrEMBL
Match: D7U3H9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S WTCTLF PVY D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVYVDGDA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ RF HV LG Y  LWR    +  CL    ++PD+ L D+   ID
Sbjct: 115 QTLRFRHVQLGHYACLWRLPPPYGSCLFAGSASPDKDLYDVFTIID 152

[Close]
BLAST of CmaCh08G001950 vs. TrEMBL
Match: A5AYS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S WTCTLF PVY D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVYVDGDA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ RF HV LG Y  LWR    +  CL    ++PD+ L D+   ID
Sbjct: 115 QTLRFRHVQLGHYACLWRLPPPYGSCLFAGSASPDKDLYDVFTIID 152

[Close]
BLAST of CmaCh08G001950 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S W+CTLF PV+ D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVHVDGNA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ RF HV LG Y  LWR    +  CL    ++P++ LCD+   ID
Sbjct: 115 QTLRFRHVQLGHYACLWRLPPPYGSCLFAGSASPNKDLCDVCTIID 152

[Close]
BLAST of CmaCh08G001950 vs. NCBI nr
Match: gi|449454680|ref|XP_004145082.1| (PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 17  NYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVYDSCHQSYRFHHVHL 76
           +Y+I+     KY VS + DH +I+AGA+ K+ED+SKWTCTLFRP YD+ HQS++F HV L
Sbjct: 58  SYHIKCCYNNKYLVSASSDHHYIVAGADQKQEDKSKWTCTLFRPAYDNYHQSFQFSHVFL 117

Query: 77  GLYVVLWRDGSHFRDCLRPHLSNPDR-HLCDLSIAID 113
           G +VVLWR  + + +CLR   S+P   HL DL++ I+
Sbjct: 118 GSHVVLWRSTAPYGECLRAQSSDPTTDHLSDLNMVIN 154

[Close]
BLAST of CmaCh08G001950 vs. NCBI nr
Match: gi|659120444|ref|XP_008460197.1| (PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-20
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 1 

Query: 17  NYNIQDGPFTKYWVSWAG-DHQFIIAGAEDKEEDRSKWTCTLFRPVYDSCHQSYRFHHVH 76
           +Y+I+     KY VS +  DH +I+AGA+ K+ED+SKWTCTLFRP YD+ HQS+RF HV+
Sbjct: 58  SYHIKCCYNNKYLVSASSSDHHYIVAGADQKQEDKSKWTCTLFRPTYDNYHQSFRFSHVY 117

Query: 77  LGLYVVLWRDGSHFRDCLRPHLS-NPDRHLCDLSIAID 113
           LG +VVLWR  + + +CLR   S +   H CDL++ I+
Sbjct: 118 LGSHVVLWRFHAPYGECLRAQSSYHTKDHPCDLNMVIN 155

[Close]
BLAST of CmaCh08G001950 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY---DS 67
           G++  +C +N         KYWV W+ +H +I+AGA + EED+SKW+CTLF PVY     
Sbjct: 57  GLVHIRCCYN--------NKYWVRWSENHYWIVAGANEPEEDQSKWSCTLFEPVYVDNKD 116

Query: 68  CHQSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
             Q  RF HV LG Y  LWR       CL    + PD+ LCD+ + +D
Sbjct: 117 PAQGVRFRHVQLGHYACLWRVAPPKDSCLFAGSAAPDKDLCDICLIVD 156

[Close]
BLAST of CmaCh08G001950 vs. NCBI nr
Match: gi|297744329|emb|CBI37299.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S W+CTLF PVY D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVYVDGDA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ +F HV LG Y  LWR    +  CL    ++PD  LCD+   ID
Sbjct: 115 QTLQFRHVQLGHYACLWRLPPPYGSCLFAGSTSPDNDLCDVCTIID 152

[Close]
BLAST of CmaCh08G001950 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 8   GVLKSKCNHNYNIQDGPFTKYWVSWAGDHQFIIAGAEDKEEDRSKWTCTLFRPVY-DSCH 67
           G++  +C +N         KYWV W+ +H +I+AGA++ +ED+S W+CTLF PVY D   
Sbjct: 55  GLVHIRCCYN--------NKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVYVDGDA 114

Query: 68  QSYRFHHVHLGLYVVLWRDGSHFRDCLRPHLSNPDRHLCDLSIAID 113
           Q+ +F HV LG Y  LWR    +  CL    ++PD  LCD+   ID
Sbjct: 115 QTLQFRHVQLGHYACLWRLPPPYGSCLFAGSTSPDNDLCDVCTIID 152

The following BLAST results are available for this feature:
BLAST of CmaCh08G001950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G001950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K956_CUCSA7.6e-2251.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1[more]
F6HZZ7_VITVI3.3e-1741.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=... [more]
D7U3H9_VITVI9.7e-1742.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=... [more]
A5AYS3_VITVI9.7e-1742.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1[more]
D7U3H5_VITVI9.7e-1740.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=... [more]
BLAST of CmaCh08G001950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454680|ref|XP_004145082.1|1.1e-2151.55PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus][more]
gi|659120444|ref|XP_008460197.1|4.6e-2051.02PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo][more]
gi|645281008|ref|XP_008245436.1|4.8e-1741.67PREDICTED: uncharacterized protein LOC103343557 [Prunus mume][more]
gi|297744329|emb|CBI37299.3|4.8e-1741.51unnamed protein product [Vitis vinifera][more]
gi|225465427|ref|XP_002264911.1|4.8e-1741.51PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008998Agglutinin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G001950.1CmaCh08G001950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008998Agglutinin domainPFAMPF07468Agglutinincoord: 20..98
score: 7.7
IPR008998Agglutinin domainunknownSSF50382Agglutinincoord: 9..110
score: 7.32
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 25..107
score: 2.4
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 27..112
score: 2.4
NoneNo IPR availablePANTHERPTHR39244:SF1SUBFAMILY NOT NAMEDcoord: 27..112
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G001950CmoCh17G005840Cucurbita moschata (Rifu)cmacmoB903
CmaCh08G001950CmoCh08G001990Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G001950MELO3C022450.2Melon (DHL92) v3.6.1cmamedB918
CmaCh08G001950CsaV3_6G006750Cucumber (Chinese Long) v3cmacucB1077
CmaCh08G001950Bhi12G002220Wax gourdcmawgoB1092
CmaCh08G001950CsGy6G006390Cucumber (Gy14) v2cgybcmaB876
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G001950Watermelon (97103) v2cmawmbB925
CmaCh08G001950Cucurbita maxima (Rimu)cmacmaB389
CmaCh08G001950Cucumber (Gy14) v1cgycmaB0956
CmaCh08G001950Cucumber (Gy14) v1cgycmaB1012
CmaCh08G001950Wild cucumber (PI 183967)cmacpiB928
CmaCh08G001950Cucumber (Chinese Long) v2cmacuB908
CmaCh08G001950Melon (DHL92) v3.5.1cmameB820
CmaCh08G001950Watermelon (Charleston Gray)cmawcgB808
CmaCh08G001950Watermelon (97103) v1cmawmB883
CmaCh08G001950Cucurbita pepo (Zucchini)cmacpeB910
CmaCh08G001950Cucurbita pepo (Zucchini)cmacpeB914
CmaCh08G001950Bottle gourd (USVL1VR-Ls)cmalsiB815
CmaCh08G001950Silver-seed gourdcarcmaB0112