CmaCh08G001910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G001910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L38, putative
Location	Cma_Chr08 : 1072916 .. 1074507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGCGTCCACAAGCCGGCATTCGCAGTTCTTGTCGCAATGGTAACTCGCAAACTCCCTGCTTCCCAACTTCATGGATTTCATTGTTCATAGTTTTTTATATTCTCAATCCATGTTTGGTTTTTGTTCCTGTATTCATTTGAGCCATACAATTACCGCTTTTTCTAGTGTACTGTTTGTGCTTACTCTTTCCATTTCTTGCTTAATCTCTCTGTATTTCTCCGCCGCCGCCGGTTTCTTGGTACCTTGAGTATTAACAGAAGAGAATGTATTGAGGAAACGACCTATGTATTTATATTCTGATTAGAATGTGCAGATTATGTATTTGCTCTCTAATTCTTGTAGTTTAGAGCATTCTGTATGTTTTCGTATCTTATGTTTTATGTCGTGTCAATATGCAGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTAACTTTTTTTTTTTTTTTTTTTTTTAATAACTAGCACCTGCAATTTATTTTTAGAGCATGAGATATTGAAAGTAATTAGCACATTACTTTTAAATGGTTAAATTAGATTAAAAGCATTTCTTAAATTGTTTGTGTTTGACTGTAAATTCATAGGTGCTTTTATCATCGGGATTTTGTATTAGATGATCATTATTTTACTGTCATTTCTAGAATTGCCAAGTGATCTGAGGAGAAGTTTTGAGGTGTTATTAGGTTTAATATCCCAATGTGGGTGATTTTGTCATTTTGTGGTTGGGATTGACATGAGGGATGAGTTGGGACTTTCTTGAATTGCTAAGTGATCTGAGCAGAAGTTATGGATGTTATTAGGTTTAATACACCATTGTGGTTGTTTTGTAATTTTTAGGTAGGCTTCATTCCATTGGATATTCCCCTTTTTTTTGTGAACTCTTATGTTCTTCCATTGTTCTTAACTAAAGTTGTTCTTATAAGAAAAAGAAATTACTTGGTATGCTTTCTAAAATGAGGATGATAATGAATTCGGTCTTGATTATGCCATTTCTTCATGTCGTCACTTGTGATCGTACAATTCCAGCCTCTGATTATTTTTCCCATTGTGCCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTTTCTCGAATGCAATCACAAGAACAGGACTAGATTTTTTTTTTTTTTTCTATTTTTCGTTGGGATCTTTTTTCCAAGTATTTCGAATACTTCTAAATTGGATTTGAGGTTGTAGTAATCCATATTCCCTTCATTTCCCAGTGGGGTTAATGGAAATTTAGAATTGTTATGTCTGAGTTTATTGTGTGGGTACCCAGTTGTTTCACTAAAACTATCTTACTCTTGCAGTGTTTCTTTAACCAACATTAGCTTTGATATGCTCAGCCTTTTTTTTTTTAATTGAAACTTATGCAACAACCCAATTCAATAGTTGATTCAGGAATGGATGGTTTTTTAGAAA

mRNA sequence

TGGAGCGTCCACAAGCCGGCATTCGCAGTTCTTGTCGCAATGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTTTCTCGAATGCAATCACAAGAACAGGACTAGATTTTTTTTTTTTTTTCTATTTTTCGTTGGGATCTTTTTTCCAAGTATTTCGAATACTTCTAAATTGGATTTGAGGTTGTAGTAATCCATATTCCCTTCATTTCCCAGTGGGGTTAATGGAAATTTAGAATTGTTATGTCTGAGTTTATTGTGTGGGTACCCAGTTGTTTCACTAAAACTATCTTACTCTTGCAGTGTTTCTTTAACCAACATTAGCTTTGATATGCTCAGCCTTTTTTTTTTTAATTGAAACTTATGCAACAACCCAATTCAATAGTTGATTCAGGAATGGATGGTTTTTTAGAAA

Coding sequence (CDS)

ATGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Homology

[Close]

BLAST of CmaCh08G001910 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.4e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.9e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh08G001910 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]

BLAST of CmaCh08G001910 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 9.4e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh08G001910 vs. TrEMBL
Match: A0A058ZXA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of CmaCh08G001910 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of CmaCh08G001910 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of CmaCh08G001910 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]

BLAST of CmaCh08G001910 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of CmaCh08G001910 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of CmaCh08G001910 vs. NCBI nr
Match: gi|359476741|ref|XP_003631881.1| (PREDICTED: 60S ribosomal protein L38 [Vitis vinifera])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001910 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

The following BLAST results are available for this feature:

BLAST of CmaCh08G001910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL38_ARATH	3.6e-31	95.65	60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	[more]
RL38_SOLLC	4.4e-29	91.30	60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	[more]
RL38_BRABE	5.9e-26	82.61	60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1	[more]
RL38_MOUSE	3.2e-24	78.26	60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3	[more]
RL38_RAT	9.4e-24	76.81	60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2	[more]

BLAST of CmaCh08G001910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A058ZXA9_EUCGR	4.7e-30	100.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1	[more]
A0A0A0KBT2_CUCSA	4.7e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1	[more]
D7SPL7_VITVI	4.7e-30	100.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=...	[more]
A0A068U8M1_COFCA	4.7e-30	100.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1	[more]
A0A068VBT7_COFCA	4.7e-30	100.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1	[more]

BLAST of CmaCh08G001910 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	2.0e-32	95.65	Ribosomal L38e protein family	[more]
AT3G59540.1	2.0e-32	95.65	Ribosomal L38e protein family	[more]

BLAST of CmaCh08G001910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629123314\|gb\|KCW87739.1\|	6.7e-30	100.00	hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]	[more]
gi\|297735234\|emb\|CBI17596.3\|	6.7e-30	100.00	unnamed protein product [Vitis vinifera]	[more]
gi\|661878012\|emb\|CDP18171.1\|	6.7e-30	100.00	unnamed protein product [Coffea canephora]	[more]
gi\|359476741\|ref\|XP_003631881.1\|	6.7e-30	100.00	PREDICTED: 60S ribosomal protein L38 [Vitis vinifera]	[more]
gi\|661891717\|emb\|CDP04642.1\|	6.7e-30	100.00	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002675	Ribosomal_L38e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001910.1	CmaCh08G001910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 1..69 score: 3.0
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 2..69 score: 2.4
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..68 score: 6.3
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 2..69 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G001910	Wax gourd	cmawgoB1092
CmaCh08G001910	Cucurbita maxima (Rimu)	cmacmaB389
CmaCh08G001910	Cucumber (Gy14) v1	cgycmaB0956
CmaCh08G001910	Cucumber (Gy14) v1	cgycmaB1012
CmaCh08G001910	Cucurbita moschata (Rifu)	cmacmoB903
CmaCh08G001910	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G001910	Wild cucumber (PI 183967)	cmacpiB928
CmaCh08G001910	Cucumber (Chinese Long) v2	cmacuB908
CmaCh08G001910	Melon (DHL92) v3.5.1	cmameB820
CmaCh08G001910	Watermelon (Charleston Gray)	cmawcgB808
CmaCh08G001910	Watermelon (97103) v1	cmawmB883
CmaCh08G001910	Cucurbita pepo (Zucchini)	cmacpeB910
CmaCh08G001910	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G001910	Bottle gourd (USVL1VR-Ls)	cmalsiB815
CmaCh08G001910	Cucumber (Gy14) v2	cgybcmaB876
CmaCh08G001910	Melon (DHL92) v3.6.1	cmamedB918
CmaCh08G001910	Silver-seed gourd	carcmaB0112
CmaCh08G001910	Cucumber (Chinese Long) v3	cmacucB1077
CmaCh08G001910	Watermelon (97103) v2	cmawmbB925