CmaCh07G013390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G013390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionYcf2 protein
LocationCma_Chr07 : 7605858 .. 7610081 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGATAAAAAAGATTTGTCTAAGTCACTTCGTTTCTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTTGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGGAGGACGCGGCACCATCCTATTCGCCAGCAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAACTCGATGAGACAGGCTGTTTCATCTCCATCGAGCGCGGATTACTCAAAATTTGCGATAATCAACGACGGCTGCTCACACAGGCAAGGCGCACGACAAACCGTCTTTACATCCTGGAGTTACAGATAGAGCAACCTGTCAGTCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGACACGCAAGGTACGGGCATTTAAACTTTCCTGCTCTAGAAAAACTACAGAAGGAGGAGTTAGTGCACGGTTTGCCAGCAATCAAAGGCGTGAACAAGCTGTGCAACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACATCCTATCGAGCCGATGAGCCGTTGGAGCTTGTACACGGCGATATCTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTAGTCGATGACAAAAGCCGCTTCATGTGGTTGACCCTGCTGCAAGCAAAAAGTGAGGCGGCAGAGGCGGTTAAGTGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAAGATGCGAGTGCTGCGCACAGACCGAGGCGGAGAATTCACCTCGACAAGTTTCGGTAAGTACTGTGACGAAATCGGCATACAACGGCACCTAACGGCGCCCTACTCCCCCCAACAGAACGGAGTGTTGGAGCGCCGGAATCAGACCATCGTCGGGACAGCAAGGTCATTGTTGGTGACGGCCGGGATGCCTGGGAGATTCTGGGGAGAGGCAGTAATGACGGCCGTATATCTCCTCAATCGGTCACCAACCCAAAGCCTTGACGGGAAGACACCATATGAGGCCTGGTACAACAAAAAACCAGCGGTACATCATTTTCGCGTGTTCGGTTGCGTCGCTTACATGAAGGTAACACGTCCCCACCTCGCCAAGCTCGATCCTAAGGGGCTGAAGGTCGTTTTTATTGGCTATGAACCCGGGAGCAAGGCGTACAGACTATATGATCCTGTAGGGGGGCGAGCTCACGTGTCTCGCGACGTCGTCTTCGATGAAAGCACCTTCTGGCAGTGGAATGACGTGATCGAGGCAGACCATAATCCAAATCAATTTACGGTGAAGTACCTCGTCACTGAGTCGGAAGAAGGAGGAGCCCAGCATCAGCAGCCGTCACCGCCGCCAGCAGGTGCAACCCCTGAACCAGTGGAATTCGCAACACCACGGACAGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCCAGGTACCGGAGGATGGACGACATAGTAGGAGGAGGTGAACCACCTGGACTGGCAGTGCGCGAGCTCGAAGAAGTGGTCGAACTACATGCCATCAGTGCAGATGAACCGAGCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCTGAAGGCAATGTAGGAGGAGATGACATCCATCACCGAAAATCAAACGTGGAGTCTGGAGGATATGCCGCCGGGACACCAAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCACAACGAAAAAGGAGAAGTTGTGAAACACAAGGCCCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGTGGCAAGGTTAGAATCCGTTCGTTTCTTACTTGCAATTGCAGCACATTACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGCTGAAGAAGACTGTTTATGTCCGACAACCACCTGGCTTCCTGGTTAACAACAACCCCAATAAAGTATTGCGCCTGCACAAGGCACTCTACGGACTTCGACAAGCTCCACGAGCCTGGAACGCGAAGCTCGACAGTACCTTACTGTCACTGAAATTCAAACGTTGCGCTTCTGAGCATGGCATGTACACGCACGGCCATGACAAGAAGCGACTAATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGTGACATGGAAGTCCTCGGAAGGTTCAAAAAGGAGATGTCGAAAAACTTCGAGATGAGCGATCTCGGCGTGCTCAGCTACTATCTCGGCATCGAAGTGCAACAGAATTCTACCGGCATCTCCATCTGCCAAAGTGCATACGCAAAGAAGCTACTGGACACAACTGGACTTGTGGACAGTAATCCTACAAGGACGCCAATGGAGGCCCGACTCCAACTAAGGAAGGCTGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTACGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGATATGTGAGCCGGTTTATGGAAGCACCTAGGGAGGAGCATTTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGCTGGGGTGTAAGATACTGCGCAGGGAGCGGAAAGGAGAAACTCAAGCTAGTTGGCTACAGTGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACTAGCGGAATGATCTACTTTCTCTCAGGCGGCGCAATCTGCTGGCAATCAACAAAACAGAAGGTAGTTGCTTTGTCTTCCTGTGAAGCAGAATACATCGCCGCTTCGATGGCAGCCACACAAGGGATCTGGCTTGCGCGACTAATGGAAGAACTCATCGGGAGAGAAAGTGATCCACCAATGCTATACGTAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCATGAACGAAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAAATTGATTACATCCGAACAGAAGAACAACTTGGAGACATCTTCACCAAGTCCCTGGCGCGGGTGAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAGTAAGGTAGATATACTACAGGTTTTAGGAGGAGATTGTTAGATAAAACCTGAGTTTTACCGTTTTTCTTAATCACACGATTTCAGAAAATCGTCCGTTTGACCATTTGACAAATCACGTCGAATGGATCACCATAGTTTTAGACTGAAATTTTGTAGGGAGTGGCACAGATTTAGTTGGCCACTCTCAGCCAATTTTAGAATCCTTTTTACTTTAAATAGGATATTTGTTCAGAAAATAAAACAACCTGAACGCAGTCAGAGTTATTTTTCTCTCTCCTTTTTGTTACGCATTTTCCCAATTTTCTCTCACCGAAATTCTATTATGTGAAAAACAATAAAGAACACTGTTCAGCAGCTTATCATGACCGGCGGCCATATTCAAGGAGACATCTTAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGTTCGTCCGATTTGTCATCTTTTTCGGCTTGGAAGATCTTATATTTATATATTTTTTTCGTCTTTAGTTCCTTAAAATCTCTTTGTTGCTACGCAAAGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGGTACTGTACTTTCTATGTCTATTATTGCTGACAAATCTTGATAATCCAAATTCGGTAGTTTATAAGAATAGTGTGAATATAGTCATTGA

mRNA sequence

ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGTGTGAATATAGTCATTGA

Coding sequence (CDS)

ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGTGTGAATATAGTCATTGA

Protein sequence

MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEIHIYELKGPNDQLCNQLLESIAPEEVVSLLLDDAQLEQKLREIPIVGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEYSH
Homology
[Close]
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDWSE+
Sbjct: 513 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEV 564

[Close]
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match: YCF2_POPAL (Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-18
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MN DPN+YRYKWSN S NFQEHFISEQKS F FQVVF RLRINQYSIDWSE+
Sbjct: 805 MNWDPNSYRYKWSNGSNNFQEHFISEQKSRFLFQVVFDRLRINQYSIDWSEV 856

[Close]
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match: YCF2_BUXMI (Protein Ycf2 OS=Buxus microphylla GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDP+AYRYKWSN SKNFQEHF+SEQKS   FQVVF RLRINQYSIDWSE+
Sbjct: 806 MNRDPDAYRYKWSNGSKNFQEHFVSEQKS--RFQVVFDRLRINQYSIDWSEV 855

[Close]
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match: YCF2_MANES (Protein Ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEH---FISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MN DPNAYRYKWSN SKNFQEH   FISEQKS F FQVVF RLRINQYSIDWSE+
Sbjct: 794 MNWDPNAYRYKWSNGSKNFQEHLEHFISEQKSRFLFQVVFDRLRINQYSIDWSEV 848

[Close]
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match: YCF2_LACSA (Protein Ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDP+AYRYKWS  SKNFQEHF+SEQKS   FQVVF RLRINQYSIDWSE+
Sbjct: 806 MNRDPDAYRYKWSTGSKNFQEHFVSEQKS--RFQVVFDRLRINQYSIDWSEV 855

[Close]
BLAST of CmaCh07G013390 vs. TrEMBL
Match: W1PWQ8_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00543p00008950 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 74/117 (63.25%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEH---FISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           MNRDPNAYRYKWSN SKN QEH   FISEQKS FHFQVVF RLRINQYSIDW        
Sbjct: 635 MNRDPNAYRYKWSNGSKNLQEHLEHFISEQKSRFHFQVVFDRLRINQYSIDWSEVIDKKD 694

Query: 61  -----------SEIHIYELKGPNDQLCNQLLESIAPEEV-----VSLLLDDAQLEQK 91
                      SEIHIYELKGPNDQLC+QLLESI  + V        LLDD    QK
Sbjct: 695 LSKSLPFFLSKSEIHIYELKGPNDQLCHQLLESIGLQIVHLKKWKPFLLDDHDTSQK 751

[Close]
BLAST of CmaCh07G013390 vs. TrEMBL
Match: A0A0A0L1M9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337880 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIVG--RYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APE+VVSLLLDDAQLEQKLREIPIV   R + KQAKGIRVDAEGDASLEDL N ESR T
Sbjct: 1359 LAPEDVVSLLLDDAQLEQKLREIPIVAKDRQKKKQAKGIRVDAEGDASLEDLTNPESRVT 1418

Query: 132  EYDVPSPDPEKTNSSTKK 148
            EYD PSPDPEKT +++KK
Sbjct: 1419 EYD-PSPDPEKTKANSKK 1435

[Close]
BLAST of CmaCh07G013390 vs. TrEMBL
Match: G3ETW1_CUCME (Protein Ycf2 OS=Cucumis melo subsp. melo GN=ycf2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDWSE+
Sbjct: 799 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEV 850

[Close]
BLAST of CmaCh07G013390 vs. TrEMBL
Match: G3EU32_CUCME (Putative uncharacterized protein ORF1 OS=Cucumis melo subsp. melo GN=ORF1 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
          MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSI WSE+
Sbjct: 1  MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSISWSEV 52

[Close]
BLAST of CmaCh07G013390 vs. TrEMBL
Match: A0A0N9YQB9_9ROSA (Protein Ycf2 OS=Ficus racemosa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKN QEHFISEQKS FHFQVVF RLRINQYSIDWSE+
Sbjct: 811 MNRDPNAYRYKWSNGSKNLQEHFISEQKSRFHFQVVFDRLRINQYSIDWSEV 862

[Close]
BLAST of CmaCh07G013390 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEH---FISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           +NRDPNAYRYKWSN SKNFQEH   F+SE+KS F  QVVF +L INQYSIDWSE+
Sbjct: 805 INRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRF--QVVFDQLCINQYSIDWSEV 857

[Close]
BLAST of CmaCh07G013390 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEH---FISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           +NRDPNAYRYKWSN SKNFQEH   F+SE+KS F  QVVF +L INQYSIDWSE+
Sbjct: 805 INRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRF--QVVFDQLCINQYSIDWSEV 857

[Close]
BLAST of CmaCh07G013390 vs. TAIR10
Match: AT3G57300.2 (AT3G57300.2 INO80 ortholog)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 76   EVVSLLLDDA---QLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEY 135
            +VVSLL+DDA   QLEQK RE+P+ V   Q K+ K IR+DAEGDA+LE+L + + +    
Sbjct: 1402 DVVSLLMDDAEAAQLEQKFRELPLQVKDRQKKKTKRIRIDAEGDATLEELEDVDRQDNGQ 1461

Query: 136  DVPSPDPEKTNSSTKK 148
            + P  +PEK  SS KK
Sbjct: 1462 E-PLEEPEKPKSSNKK 1476

[Close]
BLAST of CmaCh07G013390 vs. NCBI nr
Match: gi|548853828|gb|ERN11805.1| (hypothetical protein AMTR_s00543p00008950 [Amborella trichopoda])

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-26
Identity = 74/117 (63.25%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEH---FISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           MNRDPNAYRYKWSN SKN QEH   FISEQKS FHFQVVF RLRINQYSIDW        
Sbjct: 635 MNRDPNAYRYKWSNGSKNLQEHLEHFISEQKSRFHFQVVFDRLRINQYSIDWSEVIDKKD 694

Query: 61  -----------SEIHIYELKGPNDQLCNQLLESIAPEEV-----VSLLLDDAQLEQK 91
                      SEIHIYELKGPNDQLC+QLLESI  + V        LLDD    QK
Sbjct: 695 LSKSLPFFLSKSEIHIYELKGPNDQLCHQLLESIGLQIVHLKKWKPFLLDDHDTSQK 751

[Close]
BLAST of CmaCh07G013390 vs. NCBI nr
Match: gi|778694099|ref|XP_011653740.1| (PREDICTED: DNA helicase INO80 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIVG--RYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APE+VVSLLLDDAQLEQKLREIPIV   R + KQAKGIRVDAEGDASLEDL N ESR T
Sbjct: 1359 LAPEDVVSLLLDDAQLEQKLREIPIVAKDRQKKKQAKGIRVDAEGDASLEDLTNPESRVT 1418

Query: 132  EYDVPSPDPEKTNSSTKK 148
            EYD PSPDPEKT +++KK
Sbjct: 1419 EYD-PSPDPEKTKANSKK 1435

[Close]
BLAST of CmaCh07G013390 vs. NCBI nr
Match: gi|109896297|sp|Q2QD30.1|YCF2_CUCSA (RecName: Full=Protein Ycf2)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDWSE+
Sbjct: 513 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEV 564

[Close]
BLAST of CmaCh07G013390 vs. NCBI nr
Match: gi|346578235|ref|YP_004841827.1| (hypothetical chloroplast RF21 [Cucumis melo subsp. melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDWSE+
Sbjct: 799 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEV 850

[Close]
BLAST of CmaCh07G013390 vs. NCBI nr
Match: gi|68164847|ref|YP_247643.1| (Ycf2 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEI 53
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDWSE+
Sbjct: 513 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEV 564

The following BLAST results are available for this feature:
BLAST of CmaCh07G013390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YCF2_CUCSA2.3e-2294.23Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1[more]
YCF2_POPAL2.6e-1884.62Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1[more]
YCF2_BUXMI1.0e-1784.62Protein Ycf2 OS=Buxus microphylla GN=ycf2-A PE=3 SV=1[more]
YCF2_MANES1.3e-1783.64Protein Ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1[more]
YCF2_LACSA5.0e-1782.69Protein Ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1[more]
BLAST of CmaCh07G013390 vs. TrEMBL
Match NameE-valueIdentityDescription
W1PWQ8_AMBTC2.4e-2663.25Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00543p00008950 PE=3 SV=... [more]
A0A0A0L1M9_CUCSA2.3e-2179.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337880 PE=4 SV=1[more]
G3ETW1_CUCME2.6e-2094.23Protein Ycf2 OS=Cucumis melo subsp. melo GN=ycf2 PE=3 SV=1[more]
G3EU32_CUCME1.3e-1992.31Putative uncharacterized protein ORF1 OS=Cucumis melo subsp. melo GN=ORF1 PE=4 S... [more]
A0A0N9YQB9_9ROSA1.1e-1890.38Protein Ycf2 OS=Ficus racemosa GN=ycf2 PE=3 SV=1[more]
BLAST of CmaCh07G013390 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.11.3e-1574.55ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.11.3e-1574.55ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
AT3G57300.21.4e-0951.32 INO80 ortholog[more]
BLAST of CmaCh07G013390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548853828|gb|ERN11805.1|3.4e-2663.25hypothetical protein AMTR_s00543p00008950 [Amborella trichopoda][more]
gi|778694099|ref|XP_011653740.1|3.3e-2179.49PREDICTED: DNA helicase INO80 [Cucumis sativus][more]
gi|109896297|sp|Q2QD30.1|YCF2_CUCSA3.7e-2094.23RecName: Full=Protein Ycf2[more]
gi|346578235|ref|YP_004841827.1|3.7e-2094.23hypothetical chloroplast RF21 [Cucumis melo subsp. melo][more]
gi|68164847|ref|YP_247643.1|3.7e-2094.23Ycf2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008543Uncharacterised_Ycf2
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006338 chromatin remodeling
biological_process GO:0006281 DNA repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0031011 Ino80 complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G013390.1CmaCh07G013390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 50..90
score: 4.5E-9coord: 1..52
score: 5.6
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 1..91
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G013390CmoCh03G000430Cucurbita moschata (Rifu)cmacmoB863
CmaCh07G013390CmoCh07G013810Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G013390Lsi01G018250Bottle gourd (USVL1VR-Ls)cmalsiB793
CmaCh07G013390Cp4.1LG19g00440Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G013390Cp4.1LG10g11420Cucurbita pepo (Zucchini)cmacpeB863
CmaCh07G013390Cla97C04G070710Watermelon (97103) v2cmawmbB891
CmaCh07G013390Bhi03G001960Wax gourdcmawgoB1064
CmaCh07G013390Carg24994Silver-seed gourdcarcmaB0736
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G013390CmaCh03G000460Cucurbita maxima (Rimu)cmacmaB530
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G013390Cucumber (Chinese Long) v3cmacucB1019
CmaCh07G013390Wax gourdcmawgoB1067
CmaCh07G013390Cucurbita maxima (Rimu)cmacmaB525
CmaCh07G013390Cucumber (Gy14) v1cgycmaB0739
CmaCh07G013390Wild cucumber (PI 183967)cmacpiB880
CmaCh07G013390Cucumber (Chinese Long) v2cmacuB863
CmaCh07G013390Cucumber (Chinese Long) v2cmacuB865
CmaCh07G013390Melon (DHL92) v3.5.1cmameB813
CmaCh07G013390Watermelon (Charleston Gray)cmawcgB762
CmaCh07G013390Watermelon (97103) v1cmawmB838
CmaCh07G013390Cucumber (Gy14) v2cgybcmaB565
CmaCh07G013390Melon (DHL92) v3.6.1cmamedB912
CmaCh07G013390Silver-seed gourdcarcmaB0663