CmaCh07G012590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G012590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr07 : 6984135 .. 6985128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTAAGAAAAAAAAAACATAAATAAAGACAAAAAAGTCGAAGCATTTTCTTCAAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTTATGTGTGTTTTGATGGTATCGGTATTGCAATTCTCCACCGCTGACAAATCATCGGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGACTTTGGCTCTGTGGAGACAAATTTTAAAACGTGTTCTGCAGCTTGCCATAAGAAATGCACTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAAGAAGTTGAAAGTACATTTTTCTATCTCTTTAAATAAAAATCATTTTTAACATTCTACATGAAAAAATGTATAACTTTTTATTCTAACCATATAATATATCTACAAATAGAATAGTTGTTGCAACCTTAGTTTAAATGTATAGTTTTTTCATCCAATTTTGGTAGACTTACTCAATAGACACAAGTTTGATTTCATATCAAATTTGAATTTCTTTTTTAATCTAGTCTTTCACTAAGATTTCGAATAGCTGTCCTGAATTCAAGTTGATTATGTTGATTATGTTTTGCCTCTTCCTCAGAGAAAGACGATCAAACAATTCCCAATCATGGTCCTTGAGGATCTGATCATCCATATAATATACAAAAAGAAACTCCAAATATTTGATATCTTTCTCTTTGAATGAGATATCAATTCCAACGATGGTTTCATTAGATATCTTATAACTAGAATCCCTCTTTTTTCCAATCCAGTTCCTCCACCCCTGTTAGATTCAGGCATGACACACTTTGAATGAGATTCTTACTTTTTAATTTTATGCATTGATATTAATTTGACACACTTTGAATGAGATTCTTACTTTTTAATTTTATGCATTGATATTAATTTTTGTTGGGCTTATTTTGCAGATAAATTTAAGATCAAGATACCTCAATGATAATCGAGAGGATGAAATGAAAAGTGAGCGGTGAAGAATGAT

mRNA sequence

CAAATTAAGAAAAAAAAAACATAAATAAAGACAAAAAAGTCGAAGCATTTTCTTCAAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTTATGTGTGTTTTGATGGTATCGGTATTGCAATTCTCCACCGCTGACAAATCATCGGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGACTTTGGCTCTGTGGAGACAAATTTTAAAACGTGTTCTGCAGCTTGCCATAAGAAATGCACTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAAGAAGTTGAAAATAAATTTAAGATCAAGATACCTCAATGATAATCGAGAGGATGAAATGAAAAGTGAGCGGTGAAGAATGAT

Coding sequence (CDS)

ATGGCAAAGAAGATGATGGCAGTGGTTCTTATGTGTGTTTTGATGGTATCGGTATTGCAATTCTCCACCGCTGACAAATCATCGGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGACTTTGGCTCTGTGGAGACAAATTTTAAAACGTGTTCTGCAGCTTGCCATAAGAAATGCACTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAAGAAGTTGAAAATAAATTTAAGATCAAGATACCTCAATGA

Protein sequence

MAKKMMAVVLMCVLMVSVLQFSTADKSSAEMEAKFKSFFNDFGSVETNFKTCSAACHKKCTDAACRNKCDADCGKKEVENKFKIKIPQ

Homology

[Close]

BLAST of CmaCh07G012590 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVETNFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +  +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCTD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of CmaCh07G012590 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVETNFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +  +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 KCTD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of CmaCh07G012590 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVETNFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +  +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCTD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of CmaCh07G012590 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVETNFKTCSAACHK 60
          MAKKM+A+ LMC+++V+ LQF++A+K    A+ EAKF          +  +K+C   C K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 KCTD-----AACRNKCDADCGKKEVENKFKIKI 87
          +C +     + C  KCD DC +KEV +K  I++
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

The following BLAST results are available for this feature:

BLAST of CmaCh07G012590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G012590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDP7_CUCSA	1.6e-06	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]

BLAST of CmaCh07G012590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G012590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119712\|ref\|XP_008459802.1\|	1.0e-06	42.86	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	2.3e-06	42.86	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|659114221\|ref\|XP_008456958.1\|	5.1e-06	38.71	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G012590.1	CmaCh07G012590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 47..83 score: 2.
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 46..82 score: 6.2
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..88 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G012590	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G012590	Bottle gourd (USVL1VR-Ls)	cmalsiB792
CmaCh07G012590	Cucumber (Gy14) v2	cgybcmaB564
CmaCh07G012590	Melon (DHL92) v3.6.1	cmamedB893
CmaCh07G012590	Silver-seed gourd	carcmaB0398
CmaCh07G012590	Cucumber (Chinese Long) v3	cmacucB1018
CmaCh07G012590	Watermelon (97103) v2	cmawmbB899
CmaCh07G012590	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G012590	Wild cucumber (PI 183967)	cmacpiB872
CmaCh07G012590	Wild cucumber (PI 183967)	cmacpiB878
CmaCh07G012590	Wild cucumber (PI 183967)	cmacpiB890
CmaCh07G012590	Cucumber (Chinese Long) v2	cmacuB855
CmaCh07G012590	Cucumber (Chinese Long) v2	cmacuB861
CmaCh07G012590	Melon (DHL92) v3.5.1	cmameB792
CmaCh07G012590	Melon (DHL92) v3.5.1	cmameB806
CmaCh07G012590	Melon (DHL92) v3.5.1	cmameB811
CmaCh07G012590	Watermelon (Charleston Gray)	cmawcgB752
CmaCh07G012590	Watermelon (Charleston Gray)	cmawcgB770
CmaCh07G012590	Watermelon (97103) v1	cmawmB814
CmaCh07G012590	Watermelon (97103) v1	cmawmB839