CmaCh07G011870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G011870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr07 : 6528909 .. 6529286 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAGTGTTGCCCACATTGCCTCCTCTCCCGCCGTTGCCAACGCTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCAATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAAGTTACCTCCACTTCCAAGCTTCCCTAGTAACATCCCGACCATAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCTAACCTACCATCGATCCCTTCTCTCACTCCACCGCCTGCCACCACCACTTCACCTTGA

mRNA sequence

ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAGTGTTGCCCACATTGCCTCCTCTCCCGCCGTTGCCAACGCTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCAATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAAGTTACCTCCACTTCCAAGCTTCCCTAGTAACATCCCGACCATAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCTAACCTACCATCGATCCCTTCTCTCACTCCACCGCCTGCCACCACCACTTCACCTTGA

Coding sequence (CDS)

ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAGTGTTGCCCACATTGCCTCCTCTCCCGCCGTTGCCAACGCTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCAATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAAGTTACCTCCACTTCCAAGCTTCCCTAGTAACATCCCGACCATAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCTAACCTACCATCGATCCCTTCTCTCACTCCACCGCCTGCCACCACCACTTCACCTTGA

Protein sequence

MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPLPPLPTLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPSLTPPPATTTSP
Homology
[Close]
BLAST of CmaCh07G011870 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MASSKYLI-IAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPLPPLPTLPNPTTGS 60
           M S KY + + FMATL+FSAI++ RAAR LLQTAPPN+P LP+LP L  +P LP    G 
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPLPSFPSNIP-TIMALPPLPT--TLLPNLPSIPSLT 120
           G+PSIP+LPQPT PT QPSLPKLPPLPS P NIP T +  PPLPT  ++    PSIP LT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTTSP 126
           PPPATT+SP
Sbjct: 121 PPPATTSSP 129

[Close]
BLAST of CmaCh07G011870 vs. TrEMBL
Match: A0A0A0L1Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374890 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 72/130 (55.38%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPL-PPLPTLPNPTTGS 60
           MA+S++LIIAF ATL  S+IN G AARHL QT PP VP LP +P L PPLP LPNPT   
Sbjct: 1   MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTLIPPLPGLPNPT--- 60

Query: 61  GIPSIPSLPQPTLPTTQ-PSLP---KLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPSL 120
               +P LPQPTLP    P LP    LPPLP+      T+   PP+PT  + + PSIP L
Sbjct: 61  ----LPKLPQPTLPKINFPPLPIGLALPPLPTM-----TLPKFPPIPTIPI-SFPSIPFL 117

Query: 121 TPPPATTTSP 126
           +PPPAT++SP
Sbjct: 121 SPPPATSSSP 117

[Close]
BLAST of CmaCh07G011870 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPLPPLPTLPNPTTGSG 60
           MAS    I+ FM T +FS+++  R +RHLLQT   N+P +P+LP    LP LP   TG  
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPS 60

Query: 61  IPSIPSLPQPTLPTTQPSLPKLPPLPSFPSNIPTIMALPPLPTTLLPNLP---------- 120
           IPSIP+ PQP+LP        LPPLPS P NIPT + LPPLPTT LPNLP          
Sbjct: 61  IPSIPNFPQPSLPKLT-----LPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLP 120

Query: 121 -SIPSLTPPPATTT 124
            S+P  +PPPAT++
Sbjct: 121 SSLPFFSPPPATSS 128

[Close]
BLAST of CmaCh07G011870 vs. TrEMBL
Match: A0A059BBP9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01303 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPT-------LPPLPPLPTLP 60
           MASS   +I F+A L+FS IN    ARHLLQT  P++P LPT       LPPLP +PTLP
Sbjct: 1   MASSSKNLILFIA-LIFSTINMSFGARHLLQTTMPSIPSLPTIPTLPTSLPPLPAMPTLP 60

Query: 61  NPTTGSGIPSIP-SLPQ---PTLPTTQPSLPK--LPPLPSFPSNIPTIMALPPLPTTLLP 120
                  +P+IP +LPQ   PTLPTTQP+LPK  LPPLPS P+   T+  +P +PT+ LP
Sbjct: 61  KVAV-PPMPAIPTTLPQPTLPTLPTTQPTLPKTTLPPLPSLPTMPTTLPPMPSIPTS-LP 120

Query: 121 NLPSIPSLTPPPATT 123
            +PSIP LTPPPAT+
Sbjct: 121 KIPSIPFLTPPPATS 132

[Close]
BLAST of CmaCh07G011870 vs. TrEMBL
Match: A0A059BDA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01308 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-15
Identity = 74/136 (54.41%), Postives = 90/136 (66.18%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPT-------LPPLPPLPTLP 60
           MASS    I F+A L+FS IN    ARHLLQT  P++P LPT       LPPLP +PTLP
Sbjct: 1   MASSSKSFILFIA-LIFSTINMSLGARHLLQTTMPSIPSLPTMPTLPTSLPPLPAMPTLP 60

Query: 61  NPTTGSGIPSIP-SLPQ---PTLPTTQPSLPK--LPPLPSFPSNIPTIMALPPLPTTLLP 120
                  +P+IP +LPQ   PTLPTTQP+LPK  LPPLPS P+   T+  +P +PT+ LP
Sbjct: 61  KVAV-PPMPAIPTTLPQPTLPTLPTTQPALPKTTLPPLPSLPTMPTTLPPMPSIPTS-LP 120

Query: 121 NLPSIPSLTPPPATTT 124
            +PSIP L PPPAT+T
Sbjct: 121 KIPSIPFLAPPPATST 133

[Close]
BLAST of CmaCh07G011870 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 32  TAPPNVPVLPTLPPLPPLPTLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPLPSFPS- 91
           T PPN P++P+ P LPP+P +P P T   IP +P+ P PTLP   P++P LPPLP  P  
Sbjct: 285 TLPPN-PLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPI-PTIPTLPPLPVLPPV 344

Query: 92  ---NIPTIMALPPLPTTLLPNLPSIPSLTPPP 120
              N P++   PP     LP +P +P + P P
Sbjct: 345 PIVNPPSLPPPPPSFPVPLPPVPGLPGIPPVP 374

[Close]
BLAST of CmaCh07G011870 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MASSKYLI-IAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPLPPLPTLPNPTTGS 60
           M S KY + + FMATL+FSAI++ RAAR LLQTAPPN+P LP+LP L  +P LP    G 
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPLPSFPSNIP-TIMALPPLPT--TLLPNLPSIPSLT 120
           G+PSIP+LPQPT PT QPSLPKLPPLPS P NIP T +  PPLPT  ++    PSIP LT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTTSP 126
           PPPATT+SP
Sbjct: 121 PPPATTSSP 129

[Close]
BLAST of CmaCh07G011870 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 9.7e-19
Identity = 75/136 (55.15%), Postives = 89/136 (65.44%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPP-LPPLPTLPNPTTGS 60
           MASSK+LIIAFMATL  S+IN G+AARHLLQT PP VP LP +P  +PP P LPNPT   
Sbjct: 1   MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPNPT--- 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPS----- 120
               +P+LPQPT+P        LPPLP+        +ALPPLPT  LPN PSIP+     
Sbjct: 61  ----LPNLPQPTIPKV-----NLPPLPNG-------LALPPLPTMALPNFPSIPTIPTSF 117

Query: 121 -----LTPPPATTTSP 126
                L+PPPAT++SP
Sbjct: 121 PSIPFLSPPPATSSSP 117

[Close]
BLAST of CmaCh07G011870 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 19  AINTGRAARHLLQTAPPNVPVLPTLPP---LPPLPTLPNPTTGSGIPSIPSLPQPTLPTT 78
           +I+T RAAR LLQTAPPN+P LP+LP    LPPLP LP    G G  SIP+ PQPT PT 
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLP---MGPGTSSIPNFPQPTFPTI 90

Query: 79  QPSLPKLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPS-------LTPPPATTTSP 126
           QPSLPKLPPLPS P NIPT  A+ P  T  LP LPSIP+       LTPPPAT +SP
Sbjct: 91  QPSLPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]
BLAST of CmaCh07G011870 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 19  AINTGRAARHLLQTAPPNVPVLPTLPP---LPPLPTLPNPTTGSGIPSIPSLPQPTLPTT 78
           +I+T RAAR LLQTAPPN+P LP+LP    LPPLP LP    G G  SIP+ PQPT PT 
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLP---MGPGTSSIPNFPQPTFPTI 120

Query: 79  QPSLPKLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPS-------LTPPPATTTSP 126
           QPSLPKLPPLPS P NIPT  A+ P  T  LP LPSIP+       LTPPPAT +SP
Sbjct: 121 QPSLPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]
BLAST of CmaCh07G011870 vs. NCBI nr
Match: gi|700199439|gb|KGN54597.1| (hypothetical protein Csa_4G374890 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-16
Identity = 72/130 (55.38%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPVLPTLPPL-PPLPTLPNPTTGS 60
           MA+S++LIIAF ATL  S+IN G AARHL QT PP VP LP +P L PPLP LPNPT   
Sbjct: 1   MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTLIPPLPGLPNPT--- 60

Query: 61  GIPSIPSLPQPTLPTTQ-PSLP---KLPPLPSFPSNIPTIMALPPLPTTLLPNLPSIPSL 120
               +P LPQPTLP    P LP    LPPLP+      T+   PP+PT  + + PSIP L
Sbjct: 61  ----LPKLPQPTLPKINFPPLPIGLALPPLPTM-----TLPKFPPIPTIPI-SFPSIPFL 117

Query: 121 TPPPATTTSP 126
           +PPPAT++SP
Sbjct: 121 SPPPATSSSP 117

The following BLAST results are available for this feature:
BLAST of CmaCh07G011870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G011870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWI7_CUCSA5.7e-2664.34Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1[more]
A0A0A0L1Y3_CUCSA5.4e-1655.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374890 PE=4 SV=1[more]
A0A0A0KZV3_CUCSA5.4e-1650.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1[more]
A0A059BBP9_EUCGR2.7e-1554.81Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01303 PE=4 SV=1[more]
A0A059BDA7_EUCGR3.5e-1554.41Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01308 PE=4 SV=1[more]
BLAST of CmaCh07G011870 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15780.15.9e-0643.48 Pollen Ole e 1 allergen and extensin family protein[more]
BLAST of CmaCh07G011870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697598|ref|XP_011654355.1|8.2e-2664.34PREDICTED: RNA-binding protein 12 [Cucumis sativus][more]
gi|659125859|ref|XP_008462893.1|9.7e-1955.15PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo][more]
gi|659108950|ref|XP_008454469.1|1.3e-1862.39PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m... [more]
gi|659108948|ref|XP_008454468.1|1.3e-1862.39PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m... [more]
gi|700199439|gb|KGN54597.1|7.7e-1655.38hypothetical protein Csa_4G374890 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G011870.1CmaCh07G011870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 1..125
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G011870Carg12627Silver-seed gourdcarcmaB0398
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G011870Cucumber (Chinese Long) v3cmacucB1017
CmaCh07G011870Watermelon (97103) v2cmawmbB890
CmaCh07G011870Wax gourdcmawgoB1071
CmaCh07G011870Cucurbita maxima (Rimu)cmacmaB524
CmaCh07G011870Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G011870Cucurbita moschata (Rifu)cmacmoB859
CmaCh07G011870Melon (DHL92) v3.5.1cmameB801
CmaCh07G011870Watermelon (Charleston Gray)cmawcgB761
CmaCh07G011870Watermelon (97103) v1cmawmB827
CmaCh07G011870Cucurbita pepo (Zucchini)cmacpeB867
CmaCh07G011870Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G011870Bottle gourd (USVL1VR-Ls)cmalsiB791
CmaCh07G011870Cucumber (Gy14) v2cgybcmaB563
CmaCh07G011870Melon (DHL92) v3.6.1cmamedB899
CmaCh07G011870Silver-seed gourdcarcmaB0888