CmaCh07G010730 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G010730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	glucuronidase 1
Location	Cma_Chr07 : 5740421 .. 5740779 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGGAGCCGGCTTCTAGGGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGTTTGACTTATGGGTGGAATATTTGTACGTGGGATGATTTGAACAACTTTTTCAACAATACAAGTATGTTATTTATTATTATTTTTGGTATTTTTGCTTGCTTTCTTTTTTCCTCTCTTATACTAAAAAAAATATATATATTTAATATAATAGGGCGATTGTGACTTTTGGCTTAAATGCTCGGTTGGGTGAGTACAAGACACAAGGAATTCAATGGAAGGAAATTGGAACTATAGCAATGTCGAGGCTCTTATTCAATACATGGTAG

mRNA sequence

GGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGGAGCCGGCTTCTAGGGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGTTTGACTTATGGGTGGAATATTTGTACGTGGGATGATTTGAACAACTTTTTCAACAATACAAGTATGGCGATTGTGACTTTTGGCTTAAATGCTCGGTTGGGTGAGTACAAGACACAAGGAATTCAATGGAAGGAAATTGGAACTATAGCAATGTCGAGGCTCTTATTCAATACATGGTAG

Coding sequence (CDS)

GGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGGAGCCGGCTTCTAGGGAACCTGTCACCCATTTCAAGCAAACAAAGGTTCGTTGTTTGACTTATGGGTGGAATATTTGTACGTGGGATGATTTGAACAACTTTTTCAACAATACAAGTATGGCGATTGTGACTTTTGGCTTAAATGCTCGGTTGGGTGAGTACAAGACACAAGGAATTCAATGGAAGGAAATTGGAACTATAGCAATGTCGAGGCTCTTATTCAATACATGGTAG

Protein sequence

GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGLNARLGEYKTQGIQWKEIGTIAMSRLLFNTW

Homology

[Close]

BLAST of CmaCh07G010730 vs. TrEMBL
Match: A0A0A0KTJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G390000 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 1   GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGL 60
           G C+PF+A+KG L          F  T+  CL        WDDLNNFFNNT  AIVTFGL
Sbjct: 124 GNCNPFEAHKGLL----------FDFTE-GCLYME----RWDDLNNFFNNTG-AIVTFGL 182

Query: 61  NARLGEYKTQGIQWK 76
           NA LG+Y T+GIQW+
Sbjct: 184 NALLGKYNTKGIQWE 182

[Close]

BLAST of CmaCh07G010730 vs. TrEMBL
Match: A0A0A0KUF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043860 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 1   GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGL 60
           G CHPF+A+   L          F  T+  CL        WDDLNNFFNNT  AIVTFGL
Sbjct: 113 GNCHPFEADDSLL----------FDFTE-GCLYME----RWDDLNNFFNNTG-AIVTFGL 171

Query: 61  NARLGEYKTQGIQWK 76
           NA LG+Y TQG+QW+
Sbjct: 173 NALLGKYHTQGMQWE 171

[Close]

BLAST of CmaCh07G010730 vs. NCBI nr
Match: gi|700195824|gb|KGN51001.1| (hypothetical protein Csa_5G390000 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.6e-09
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 1   GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGL 60
           G C+PF+A+KG L          F  T+  CL        WDDLNNFFNNT  AIVTFGL
Sbjct: 124 GNCNPFEAHKGLL----------FDFTE-GCLYME----RWDDLNNFFNNTG-AIVTFGL 182

Query: 61  NARLGEYKTQGIQWK 76
           NA LG+Y T+GIQW+
Sbjct: 184 NALLGKYNTKGIQWE 182

[Close]

BLAST of CmaCh07G010730 vs. NCBI nr
Match: gi|449445228|ref|XP_004140375.1| (PREDICTED: heparanase-like protein 1 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.6e-09
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 1   GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGL 60
           G C+PF+A+KG L          F  T+  CL        WDDLNNFFNNT  AIVTFGL
Sbjct: 113 GNCNPFEAHKGLL----------FDFTE-GCLYME----RWDDLNNFFNNTG-AIVTFGL 171

Query: 61  NARLGEYKTQGIQWK 76
           NA LG+Y T+GIQW+
Sbjct: 173 NALLGKYNTKGIQWE 171

[Close]

BLAST of CmaCh07G010730 vs. NCBI nr
Match: gi|700198112|gb|KGN53270.1| (hypothetical protein Csa_4G043860 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 1   GTCHPFQANKGSLEPASREPVTHFKQTKVRCLTYGWNICTWDDLNNFFNNTSMAIVTFGL 60
           G CHPF+A+   L          F  T+  CL        WDDLNNFFNNT  AIVTFGL
Sbjct: 113 GNCHPFEADDSLL----------FDFTE-GCLYME----RWDDLNNFFNNTG-AIVTFGL 171

Query: 61  NARLGEYKTQGIQWK 76
           NA LG+Y TQG+QW+
Sbjct: 173 NALLGKYHTQGMQWE 171

The following BLAST results are available for this feature:

BLAST of CmaCh07G010730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G010730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTJ9_CUCSA	6.0e-09	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G390000 PE=4 SV=1	[more]
A0A0A0KUF1_CUCSA	2.3e-08	52.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043860 PE=4 SV=1	[more]

BLAST of CmaCh07G010730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G010730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195824\|gb\|KGN51001.1\|	8.6e-09	53.33	hypothetical protein Csa_5G390000 [Cucumis sativus]	[more]
gi\|449445228\|ref\|XP_004140375.1\|	8.6e-09	53.33	PREDICTED: heparanase-like protein 1 [Cucumis sativus]	[more]
gi\|700198112\|gb\|KGN53270.1\|	3.3e-08	52.00	hypothetical protein Csa_4G043860 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005199	Glyco_hydro_79

Vocabulary: **Molecular Function**
Term	Definition
GO:0016798	hydrolase activity, acting on glycosyl bonds

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G010730.1	CmaCh07G010730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005199	Glycoside hydrolase, family 79	PFAM	PF03662	Glyco_hydro_79n	coord: 20..74 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G010730	Melon (DHL92) v3.6.1	cmamedB904
CmaCh07G010730	Silver-seed gourd	carcmaB0779
CmaCh07G010730	Silver-seed gourd	carcmaB0818
CmaCh07G010730	Cucumber (Chinese Long) v3	cmacucB1016
CmaCh07G010730	Cucumber (Chinese Long) v3	cmacucB1025
CmaCh07G010730	Watermelon (97103) v2	cmawmbB894
CmaCh07G010730	Watermelon (97103) v2	cmawmbB897
CmaCh07G010730	Wax gourd	cmawgoB1059
CmaCh07G010730	Wax gourd	cmawgoB1077
CmaCh07G010730	Cucumber (Gy14) v1	cgycmaB0358
CmaCh07G010730	Cucurbita maxima (Rimu)	cmacmaB526
CmaCh07G010730	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G010730	Cucurbita moschata (Rifu)	cmacmoB860
CmaCh07G010730	Cucurbita moschata (Rifu)	cmacmoB873
CmaCh07G010730	Wild cucumber (PI 183967)	cmacpiB887
CmaCh07G010730	Cucumber (Chinese Long) v2	cmacuB859
CmaCh07G010730	Cucumber (Chinese Long) v2	cmacuB871
CmaCh07G010730	Melon (DHL92) v3.5.1	cmameB803
CmaCh07G010730	Melon (DHL92) v3.5.1	cmameB815
CmaCh07G010730	Watermelon (Charleston Gray)	cmawcgB765
CmaCh07G010730	Watermelon (97103) v1	cmawmB830
CmaCh07G010730	Watermelon (97103) v1	cmawmB835
CmaCh07G010730	Cucurbita pepo (Zucchini)	cmacpeB868
CmaCh07G010730	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G010730	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G010730	Bottle gourd (USVL1VR-Ls)	cmalsiB794
CmaCh07G010730	Cucumber (Gy14) v2	cgybcmaB562
CmaCh07G010730	Cucumber (Gy14) v2	cgybcmaB566
CmaCh07G010730	Cucumber (Gy14) v2	cgybcmaB573