CmaCh07G005600 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G005600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr07 : 2422776 .. 2423165 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGACTCAGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTCCTTCTTCGAGTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTACGCCTACTCCAGCTCCAATTACTCCTTCTGGGTCTCCTGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCGCCGGAAGGACCGCCAGCAGACAACCCAACCGGAGCAGCATCGCAGATCGGCAGAGCGGGTACGTTGGGGATGGCTGTGGCTGGAAGCCTGTTGGCAGTGATGTTAGCAGCCTAG

mRNA sequence

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGACTCAGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTCCTTCTTCGAGTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTACGCCTACTCCAGCTCCAATTACTCCTTCTGGGTCTCCTGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCGCCGGAAGGACCGCCAGCAGACAACCCAACCGGAGCAGCATCGCAGATCGGCAGAGCGGGTACGTTGGGGATGGCTGTGGCTGGAAGCCTGTTGGCAGTGATGTTAGCAGCCTAG

Coding sequence (CDS)

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGACTCAGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTCCTTCTTCGAGTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTACGCCTACTCCAGCTCCAATTACTCCTTCTGGGTCTCCTGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCGCCGGAAGGACCGCCAGCAGACAACCCAACCGGAGCAGCATCGCAGATCGGCAGAGCGGGTACGTTGGGGATGGCTGTGGCTGGAAGCCTGTTGGCAGTGATGTTAGCAGCCTAG

Protein sequence

MGFSGVRFIMVLALLAATCMAQAPAPVPAPAPTQGPSQPLPPAPATPAPSSSPASPTPAPETSTPTPAPITPSGSPAGGPVVPRVASPPSSAPEGPPADNPTGAASQIGRAGTLGMAVAGSLLAVMLAA

Homology

[Close]

BLAST of CmaCh07G005600 vs. TrEMBL
Match: A0A0A0KG74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVP-------------APAPTQGPSQPLPPAPATP 60
           MGFSGVRF+++ ALL   CMAQAPAP P             AP+P   P  P P     P
Sbjct: 1   MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  APSSSPASPTPAPETSTPTPAPITP------SGSPAGGPVVPRVASP--------PSSAP 120
           +PS +P SP+PAP+ ++P PAPI P      + +P+GGPV+P +ASP        PS AP
Sbjct: 61  SPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAP 120

Query: 121 EGPPADNPTGAASQIGRAGTLGMAVAGSLLAVMLA 129
           +GP ADNP GA S IG A TLG+A+AG+L  V+L+
Sbjct: 121 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

[Close]

BLAST of CmaCh07G005600 vs. TrEMBL
Match: V7CEA9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G289900g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVPAPAPTQGPSQPLPPAPATP-----APSSSPAS 60
           MG++ V+  +++ LLA  C+AQAPAP P   P+  PS P  P  ATP     AP+ SP  
Sbjct: 1   MGYNAVKVFVMIGLLATACLAQAPAPAPTQPPSATPSPPTQPPSATPSPPTSAPAPSPTV 60

Query: 61  PTPAPETSTPTPAPITPSGSPAGGPVVPRVASPPSSAPEGP--------PADNPTGAASQ 120
            TP P  S P PAP TP+ SPA  P  P  +SPP+  P GP        PA  P  AA  
Sbjct: 61  NTPPPPVSAPAPAPPTPTPSPAQAP-GPNTSSPPAPGPSGPTPGPAPEQPASEPPSAAFS 120

Query: 121 IGRAGTLGMAVAGSLLAVMLA 129
           I +      A+ G+ + V LA
Sbjct: 121 ISKTCIAATALVGTFVVVALA 140

[Close]

BLAST of CmaCh07G005600 vs. TrEMBL
Match: V7CMA1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G149200g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 59/144 (40.97%), Postives = 77/144 (53.47%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVPAPAPTQGPSQ-------PLPPAPATPAPSSSP 60
           MG S V+  ++L LLA +C+AQAP   P   PT  P         P P APATP PSS P
Sbjct: 1   MGSSAVQLFLILGLLATSCIAQAPGGAPTQPPTTTPPPPPAAAPVPAPTAPATPPPSSPP 60

Query: 61  ASPTPAPETSTPTPAP-------ITPSGSPAGGPVVPRVASPPSSAPEGPPADNPTGAAS 120
            +PTPAP  + PTPAP        +PS    G P  P     PSSAP    ++ P   +S
Sbjct: 61  PAPTPAPTPTAPTPAPASSPSSAASPSAESPGSPTSPPAPPAPSSAPSPSVSEPPPSPSS 120

Query: 121 --QIGRAGTLGMAVAGSLLAVMLA 129
              +G+A   G A+AG+ +A++LA
Sbjct: 121 AFSVGKAFVAGSALAGTFVAMVLA 144

[Close]

BLAST of CmaCh07G005600 vs. NCBI nr
Match: gi|700193516|gb|KGN48720.1| (hypothetical protein Csa_6G499150 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVP-------------APAPTQGPSQPLPPAPATP 60
           MGFSGVRF+++ ALL   CMAQAPAP P             AP+P   P  P P     P
Sbjct: 1   MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  APSSSPASPTPAPETSTPTPAPITP------SGSPAGGPVVPRVASP--------PSSAP 120
           +PS +P SP+PAP+ ++P PAPI P      + +P+GGPV+P +ASP        PS AP
Sbjct: 61  SPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAP 120

Query: 121 EGPPADNPTGAASQIGRAGTLGMAVAGSLLAVMLA 129
           +GP ADNP GA S IG A TLG+A+AG+L  V+L+
Sbjct: 121 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

[Close]

BLAST of CmaCh07G005600 vs. NCBI nr
Match: gi|593786889|ref|XP_007156485.1| (hypothetical protein PHAVU_003G289900g [Phaseolus vulgaris])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVPAPAPTQGPSQPLPPAPATP-----APSSSPAS 60
           MG++ V+  +++ LLA  C+AQAPAP P   P+  PS P  P  ATP     AP+ SP  
Sbjct: 1   MGYNAVKVFVMIGLLATACLAQAPAPAPTQPPSATPSPPTQPPSATPSPPTSAPAPSPTV 60

Query: 61  PTPAPETSTPTPAPITPSGSPAGGPVVPRVASPPSSAPEGP--------PADNPTGAASQ 120
            TP P  S P PAP TP+ SPA  P  P  +SPP+  P GP        PA  P  AA  
Sbjct: 61  NTPPPPVSAPAPAPPTPTPSPAQAP-GPNTSSPPAPGPSGPTPGPAPEQPASEPPSAAFS 120

Query: 121 IGRAGTLGMAVAGSLLAVMLA 129
           I +      A+ G+ + V LA
Sbjct: 121 ISKTCIAATALVGTFVVVALA 140

[Close]

BLAST of CmaCh07G005600 vs. NCBI nr
Match: gi|593790704|ref|XP_007158391.1| (hypothetical protein PHAVU_002G149200g [Phaseolus vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 59/144 (40.97%), Postives = 77/144 (53.47%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAPVPAPAPTQGPSQ-------PLPPAPATPAPSSSP 60
           MG S V+  ++L LLA +C+AQAP   P   PT  P         P P APATP PSS P
Sbjct: 1   MGSSAVQLFLILGLLATSCIAQAPGGAPTQPPTTTPPPPPAAAPVPAPTAPATPPPSSPP 60

Query: 61  ASPTPAPETSTPTPAP-------ITPSGSPAGGPVVPRVASPPSSAPEGPPADNPTGAAS 120
            +PTPAP  + PTPAP        +PS    G P  P     PSSAP    ++ P   +S
Sbjct: 61  PAPTPAPTPTAPTPAPASSPSSAASPSAESPGSPTSPPAPPAPSSAPSPSVSEPPPSPSS 120

Query: 121 --QIGRAGTLGMAVAGSLLAVMLA 129
              +G+A   G A+AG+ +A++LA
Sbjct: 121 AFSVGKAFVAGSALAGTFVAMVLA 144

The following BLAST results are available for this feature:

BLAST of CmaCh07G005600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG74_CUCSA	2.0e-18	48.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1	[more]
V7CEA9_PHAVU	1.0e-06	41.13	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G289900g PE=4 SV=1	[more]
V7CMA1_PHAVU	1.8e-06	40.97	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G149200g PE=4 SV=1	[more]

BLAST of CmaCh07G005600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193516\|gb\|KGN48720.1\|	2.9e-18	48.39	hypothetical protein Csa_6G499150 [Cucumis sativus]	[more]
gi\|593786889\|ref\|XP_007156485.1\|	1.5e-06	41.13	hypothetical protein PHAVU_003G289900g [Phaseolus vulgaris]	[more]
gi\|593790704\|ref\|XP_007158391.1\|	2.6e-06	40.97	hypothetical protein PHAVU_002G149200g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G005600.1	CmaCh07G005600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G005600	Cucumber (Chinese Long) v3	cmacucB1008
CmaCh07G005600	Cucumber (Chinese Long) v3	cmacucB1035
CmaCh07G005600	Watermelon (97103) v2	cmawmbB875
CmaCh07G005600	Wax gourd	cmawgoB1072
CmaCh07G005600	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh07G005600	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh07G005600	Cucumber (Gy14) v1	cgycmaB0235
CmaCh07G005600	Cucumber (Gy14) v1	cgycmaB0463
CmaCh07G005600	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G005600	Cucurbita moschata (Rifu)	cmacmoB844
CmaCh07G005600	Cucurbita moschata (Rifu)	cmacmoB858
CmaCh07G005600	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G005600	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G005600	Melon (DHL92) v3.5.1	cmameB787
CmaCh07G005600	Melon (DHL92) v3.5.1	cmameB809
CmaCh07G005600	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G005600	Watermelon (Charleston Gray)	cmawcgB775
CmaCh07G005600	Watermelon (97103) v1	cmawmB826
CmaCh07G005600	Cucurbita pepo (Zucchini)	cmacpeB866
CmaCh07G005600	Cucurbita pepo (Zucchini)	cmacpeB876
CmaCh07G005600	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G005600	Cucurbita pepo (Zucchini)	cmacpeB889
CmaCh07G005600	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G005600	Bottle gourd (USVL1VR-Ls)	cmalsiB807
CmaCh07G005600	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G005600	Melon (DHL92) v3.6.1	cmamedB907
CmaCh07G005600	Silver-seed gourd	carcmaB0571
CmaCh07G005600	Silver-seed gourd	carcmaB1056
CmaCh07G005600	Silver-seed gourd	carcmaB1289