CmaCh07G004530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G004530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr07 : 1976020 .. 1976773 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGACCCTCACTCCCTTCACCTCCACTGACAAGACGGCCGAGATCATGTCCAGATACCGGCCCATCGCCCCTAAGCCCGAACCCCCCTCCCCCTTCCCCACCACCGATCACTCCCACAACATCCCCCCCTCCTCCTCCACGTTTCTTCGAAATGTATGGCCACACTTACAGGCCAGACCCACCCGTACCCGCAAGAGACCTCGCGCTGCCCCCATTTCGCCTCACGCCTTGAAGCGATCCAGGGCTACTACCCCCTCCAGTTTCTCGATCCACCCCTTTCGCTCNCCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCCTTCATTCTTCTTATTATTATTCATATAATTTCCCTTCGATAGTATAATATTGTCTACTTTGAATATAAGCTTTCATGATTTTGTTTTTTTGTTTCTCCAAAAGACTTTATTCCAATGGAGATGTAATCGATAACCCACGATCATTTCTTTAATTAGTCAATGGGTTTTTGCTTATTTTAGCCAAGGTTGGTGGATTTTGTCTGTTGATGATCGTTGGAGTCCGAAAAGATCATAGATATATATATATATATATATATATATATGTGGGTGTGTGAGAAGATTATATTTTGCTTTTGGTGTAAAGGAAACCGCCATGCGTTTGTATTATTATTATTTTGGATTTTGAATTCCTTAGGTAATAGGTCATCGATTCCCCCGTTGTGCTGCTCAAGGAGAAAAACGCCACACCCATTTGTCTCCCCTTAG

mRNA sequence

ATGATCAAGACCCTCACTCCCTTCACCTCCACTGACAAGACGGCCGAGATCATGTCCAGATACCGGCCCATCGCCCCTAAGCCCGAACCCCCCTCCCCCTTCCCCACCACCGATCACTCCCACAACATCCCCCCCTCCTCCTCCACGTTTCTTCGAAATGTATGGCCACACTTACAGGCCAGACCCACCCGTACCCGCAAGAGACCTCGCGCTGCCCCCATTTCGCCTCACGCCTTGAAGCGATCCAGGGCTACTACCCCCTCCAGTAATAGGTCATCGATTCCCCCGTTGTGCTGCTCAAGGAGAAAAACGCCACACCCATTTGTCTCCCCTTAG

Coding sequence (CDS)

ATGATCAAGACCCTCACTCCCTTCACCTCCACTGACAAGACGGCCGAGATCATGTCCAGATACCGGCCCATCGCCCCTAAGCCCGAACCCCCCTCCCCCTTCCCCACCACCGATCACTCCCACAACATCCCCCCCTCCTCCTCCACGTTTCTTCGAAATGTATGGCCACACTTACAGGCCAGACCCACCCGTACCCGCAAGAGACCTCGCGCTGCCCCCATTTCGCCTCACGCCTTGAAGCGATCCAGGGCTACTACCCCCTCCAGTAATAGGTCATCGATTCCCCCGTTGTGCTGCTCAAGGAGAAAAACGCCACACCCATTTGTCTCCCCTTAG

Protein sequence

MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPSSSTFLRNVWPHLQARPTRTRKRPRAAPISPHALKRSRATTPSSNRSSIPPLCCSRRKTPHPFVSP

Homology

[Close]

BLAST of CmaCh07G004530 vs. TrEMBL
Match: A0A0A0L0I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G643080 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-24
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 1


Query: 1   MIKTLTP-FTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHS-HNIP-----PSSSTFLRN 60
           MIKTL P F STDKTAEIMSRYRPIAPKPE  SPFPT+DHS +NIP      SSS+FLRN
Sbjct: 58  MIKTLPPPFPSTDKTAEIMSRYRPIAPKPE--SPFPTSDHSLNNIPHSSSSSSSSSFLRN 117

Query: 61  VWPHLQARPTRTRKRPRAAPISPHALKRSRATTPSSNRS 93
           VWP LQARPTRTRKR R  PISPH+LKR+R  TPS N S
Sbjct: 118 VWPQLQARPTRTRKRSRPPPISPHSLKRTR-ITPSPNFS 153

[Close]

BLAST of CmaCh07G004530 vs. TrEMBL
Match: M1APU1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010622 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPS--SSTFLRNVWPHL 60
          M++TL P+ ST KTAEIM+RYRPIAPKPE P+   + D+   +PP+   S FLRNVWP L
Sbjct: 1  MMQTLNPYPSTSKTAEIMARYRPIAPKPEAPTSPVSEDNPTGLPPNIQKSPFLRNVWPQL 60

Query: 61 QARPTRTRKRPRAAPISPHALKRSRA 85
          QARPTRTRKR R A + P ++KR+RA
Sbjct: 61 QARPTRTRKRGRTA-LGPPSMKRARA 85

[Close]

BLAST of CmaCh07G004530 vs. TrEMBL
Match: A0A067L305_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16015 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPSSSTFLRNVWPHLQA 60
          M+KTL+P+++T KTAEIMSRYRPIAPKPEPP+       S +     S +LRN+WP LQA
Sbjct: 1  MLKTLSPYSTTAKTAEIMSRYRPIAPKPEPPANSLGESSSMSQKIRQSPYLRNLWPQLQA 60

Query: 61 RPTRTRKRPRAAPISPHALKRSRAT 86
          RPTRTRKR RAA ISP  +KR R T
Sbjct: 61 RPTRTRKRGRAA-ISPPTIKRPRTT 84

[Close]

BLAST of CmaCh07G004530 vs. TrEMBL
Match: K4BUL1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPS--SSTFLRNVWPHL 60
          M++TL P+ ST KTAEIM+RYRPIAPKPE P+   + D+   +PP+   S FLRNVWP L
Sbjct: 1  MMQTLNPYPSTSKTAEIMARYRPIAPKPEAPTSPVSEDNPTGLPPNIQKSPFLRNVWPQL 60

Query: 61 QARPTRTRKRPRAAPISPHALKRSR 84
          QARPTRTRKR R A + P ++KR+R
Sbjct: 61 QARPTRTRKRGRTA-LGPPSMKRAR 84

[Close]

BLAST of CmaCh07G004530 vs. TrEMBL
Match: B9R6Z1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587270 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPSSSTFLRNVWPHLQA 60
          MIKTL+P+++T KTAEIMSRYRPIAPKPE PS       S +   S S +LRN+WP LQA
Sbjct: 1  MIKTLSPYSTTAKTAEIMSRYRPIAPKPEGPSNSFGESSSMSQKISQSPYLRNLWPQLQA 60

Query: 61 RPTRTRKRPRAAPISPHALKRSR 84
          RPTRTRKR RAA ISP  +KR R
Sbjct: 61 RPTRTRKRGRAA-ISPPTIKRPR 82

[Close]

BLAST of CmaCh07G004530 vs. TAIR10
Match: AT1G27461.1 (AT1G27461.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-14
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 1   MIKTLTPF-----TSTDKTAEIMSRYRPIAPKPEPP---SPFPTTDHSHNIPPSSSTFLR 60
           MIK L P      T+T KTAEI+S+YRPIAPKP  P      P++  SH I  S S +LR
Sbjct: 1   MIKILNPHSHHSQTTTLKTAEILSKYRPIAPKPGTPRVNDDDPSSSMSHKI--SQSPYLR 60

Query: 61  NVWPHLQARPTRTRKRPRAA-PISPHALKRSRATTPSSNRSSI 95
           N+WP LQARPTRTRKR R     S  A+KR +++  SS+ S+I
Sbjct: 61  NLWPQLQARPTRTRKRGRGGMGPSSLAMKRPKSSCGSSSTSTI 101

[Close]

BLAST of CmaCh07G004530 vs. NCBI nr
Match: gi|659103617|ref|XP_008452651.1| (PREDICTED: uncharacterized protein LOC103493608 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHS-HNIP------PSSSTFLRN 60
          MIKTL PF STDKTAEIMSRYRPIAPKPE  SPFPT+DHS +NIP       SSS+FLRN
Sbjct: 1  MIKTLPPFPSTDKTAEIMSRYRPIAPKPE--SPFPTSDHSLNNIPHSSSSSSSSSSFLRN 60

Query: 61 VWPHLQARPTRTRKRPRAAPISPHALKRSRATTP 88
          VWP LQARPTRTRKR R  PISPH+LKR+R T P
Sbjct: 61 VWPQLQARPTRTRKRSRPPPISPHSLKRARITPP 92

[Close]

BLAST of CmaCh07G004530 vs. NCBI nr
Match: gi|700200120|gb|KGN55278.1| (hypothetical protein Csa_4G643080 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-24
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 1


Query: 1   MIKTLTP-FTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHS-HNIP-----PSSSTFLRN 60
           MIKTL P F STDKTAEIMSRYRPIAPKPE  SPFPT+DHS +NIP      SSS+FLRN
Sbjct: 58  MIKTLPPPFPSTDKTAEIMSRYRPIAPKPE--SPFPTSDHSLNNIPHSSSSSSSSSFLRN 117

Query: 61  VWPHLQARPTRTRKRPRAAPISPHALKRSRATTPSSNRS 93
           VWP LQARPTRTRKR R  PISPH+LKR+R  TPS N S
Sbjct: 118 VWPQLQARPTRTRKRSRPPPISPHSLKRTR-ITPSPNFS 153

[Close]

BLAST of CmaCh07G004530 vs. NCBI nr
Match: gi|778696448|ref|XP_004141406.2| (PREDICTED: uncharacterized protein LOC101210181 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 1


Query: 18 MSRYRPIAPKPEPPSPFPTTDHS-HNIP-----PSSSTFLRNVWPHLQARPTRTRKRPRA 77
          MSRYRPIAPKPE  SPFPT+DHS +NIP      SSS+FLRNVWP LQARPTRTRKR R 
Sbjct: 1  MSRYRPIAPKPE--SPFPTSDHSLNNIPHSSSSSSSSSFLRNVWPQLQARPTRTRKRSRP 60

Query: 78 APISPHALKRSRATTPSSNRS 93
           PISPH+LKR+R  TPS N S
Sbjct: 61 PPISPHSLKRTR-ITPSPNFS 78

[Close]

BLAST of CmaCh07G004530 vs. NCBI nr
Match: gi|971567370|ref|XP_015168594.1| (PREDICTED: uncharacterized protein LOC107062454 [Solanum tuberosum])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPS--SSTFLRNVWPHL 60
          M++TL P+ ST KTAEIM+RYRPIAPKPE P+   + D+   +PP+   S FLRNVWP L
Sbjct: 1  MMQTLNPYPSTSKTAEIMARYRPIAPKPEAPTSPVSEDNPTGLPPNIQKSPFLRNVWPQL 60

Query: 61 QARPTRTRKRPRAAPISPHALKRSRA 85
          QARPTRTRKR R A + P ++KR+RA
Sbjct: 61 QARPTRTRKRGRTA-LGPPSMKRARA 85

[Close]

BLAST of CmaCh07G004530 vs. NCBI nr
Match: gi|802570492|ref|XP_012068206.1| (PREDICTED: uncharacterized protein LOC105630835 [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MIKTLTPFTSTDKTAEIMSRYRPIAPKPEPPSPFPTTDHSHNIPPSSSTFLRNVWPHLQA 60
          M+KTL+P+++T KTAEIMSRYRPIAPKPEPP+       S +     S +LRN+WP LQA
Sbjct: 1  MLKTLSPYSTTAKTAEIMSRYRPIAPKPEPPANSLGESSSMSQKIRQSPYLRNLWPQLQA 60

Query: 61 RPTRTRKRPRAAPISPHALKRSRAT 86
          RPTRTRKR RAA ISP  +KR R T
Sbjct: 61 RPTRTRKRGRAA-ISPPTIKRPRTT 84

The following BLAST results are available for this feature:

BLAST of CmaCh07G004530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G004530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0I3_CUCSA	2.8e-24	74.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G643080 PE=4 SV=1	[more]
M1APU1_SOLTU	2.1e-16	60.47	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010622 PE=4 SV=1	[more]
A0A067L305_JATCU	2.8e-16	62.35	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16015 PE=4 SV=1	[more]
K4BUL1_SOLLC	6.2e-16	60.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9R6Z1_RICCO	1.1e-15	65.06	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587270 PE=4 SV=1	[more]

BLAST of CmaCh07G004530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27461.1	5.2e-14	51.46	unknown protein	[more]

BLAST of CmaCh07G004530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103617\|ref\|XP_008452651.1\|	1.2e-25	75.53	PREDICTED: uncharacterized protein LOC103493608 [Cucumis melo]	[more]
gi\|700200120\|gb\|KGN55278.1\|	4.0e-24	74.75	hypothetical protein Csa_4G643080 [Cucumis sativus]	[more]
gi\|778696448\|ref\|XP_004141406.2\|	2.1e-17	72.84	PREDICTED: uncharacterized protein LOC101210181 [Cucumis sativus]	[more]
gi\|971567370\|ref\|XP_015168594.1\|	3.1e-16	60.47	PREDICTED: uncharacterized protein LOC107062454 [Solanum tuberosum]	[more]
gi\|802570492\|ref\|XP_012068206.1\|	4.0e-16	62.35	PREDICTED: uncharacterized protein LOC105630835 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G004530.1	CmaCh07G004530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G004530	Watermelon (97103) v2	cmawmbB875
CmaCh07G004530	Watermelon (97103) v2	cmawmbB901
CmaCh07G004530	Watermelon (97103) v2	cmawmbB904
CmaCh07G004530	Wax gourd	cmawgoB1058
CmaCh07G004530	Wax gourd	cmawgoB1085
CmaCh07G004530	Cucurbita maxima (Rimu)	cmacmaB070
CmaCh07G004530	Cucurbita maxima (Rimu)	cmacmaB205
CmaCh07G004530	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh07G004530	Cucumber (Gy14) v1	cgycmaB0048
CmaCh07G004530	Cucumber (Gy14) v1	cgycmaB0945
CmaCh07G004530	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G004530	Cucurbita moschata (Rifu)	cmacmoB843
CmaCh07G004530	Cucurbita moschata (Rifu)	cmacmoB852
CmaCh07G004530	Cucurbita moschata (Rifu)	cmacmoB858
CmaCh07G004530	Wild cucumber (PI 183967)	cmacpiB875
CmaCh07G004530	Wild cucumber (PI 183967)	cmacpiB881
CmaCh07G004530	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G004530	Cucumber (Chinese Long) v2	cmacuB858
CmaCh07G004530	Cucumber (Chinese Long) v2	cmacuB864
CmaCh07G004530	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G004530	Melon (DHL92) v3.5.1	cmameB797
CmaCh07G004530	Melon (DHL92) v3.5.1	cmameB809
CmaCh07G004530	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G004530	Watermelon (Charleston Gray)	cmawcgB774
CmaCh07G004530	Watermelon (97103) v1	cmawmB826
CmaCh07G004530	Watermelon (97103) v1	cmawmB821
CmaCh07G004530	Cucurbita pepo (Zucchini)	cmacpeB866
CmaCh07G004530	Cucurbita pepo (Zucchini)	cmacpeB876
CmaCh07G004530	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G004530	Cucurbita pepo (Zucchini)	cmacpeB882
CmaCh07G004530	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G004530	Bottle gourd (USVL1VR-Ls)	cmalsiB804
CmaCh07G004530	Bottle gourd (USVL1VR-Ls)	cmalsiB806
CmaCh07G004530	Bottle gourd (USVL1VR-Ls)	cmalsiB808
CmaCh07G004530	Cucumber (Gy14) v2	cgybcmaB266
CmaCh07G004530	Cucumber (Gy14) v2	cgybcmaB453
CmaCh07G004530	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G004530	Melon (DHL92) v3.6.1	cmamedB885
CmaCh07G004530	Melon (DHL92) v3.6.1	cmamedB892
CmaCh07G004530	Melon (DHL92) v3.6.1	cmamedB907
CmaCh07G004530	Silver-seed gourd	carcmaB0571
CmaCh07G004530	Silver-seed gourd	carcmaB1056
CmaCh07G004530	Silver-seed gourd	carcmaB1360
CmaCh07G004530	Cucumber (Chinese Long) v3	cmacucB1010
CmaCh07G004530	Cucumber (Chinese Long) v3	cmacucB1015
CmaCh07G004530	Cucumber (Chinese Long) v3	cmacucB1035